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cqengine
cqengine-master/code/src/main/java/com/googlecode/cqengine/query/parser/common/valuetypes/BooleanParser.java
/** * Copyright 2012-2015 Niall Gallagher * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or a...
1,363
32.268293
96
java
cqengine
cqengine-master/code/src/main/java/com/googlecode/cqengine/query/parser/common/valuetypes/DoubleParser.java
/** * Copyright 2012-2015 Niall Gallagher * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or a...
973
31.466667
80
java
cqengine
cqengine-master/code/src/main/java/com/googlecode/cqengine/query/parser/common/valuetypes/FloatParser.java
/** * Copyright 2012-2015 Niall Gallagher * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or a...
968
31.3
78
java
cqengine
cqengine-master/code/src/main/java/com/googlecode/cqengine/query/parser/common/valuetypes/CharacterParser.java
/** * Copyright 2012-2015 Niall Gallagher * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or a...
1,080
31.757576
86
java
cqengine
cqengine-master/code/src/main/java/com/googlecode/cqengine/query/parser/common/valuetypes/BigDecimalParser.java
/** * Copyright 2012-2015 Niall Gallagher * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or a...
1,019
30.875
88
java
cqengine
cqengine-master/code/src/main/java/com/googlecode/cqengine/query/parser/sql/SQLParser.java
/** * Copyright 2012-2015 Niall Gallagher * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or a...
3,837
38.163265
129
java
cqengine
cqengine-master/code/src/main/java/com/googlecode/cqengine/query/parser/sql/support/FallbackValueParser.java
/** * Copyright 2012-2015 Niall Gallagher * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or a...
1,629
33.680851
152
java
cqengine
cqengine-master/code/src/main/java/com/googlecode/cqengine/query/parser/sql/support/StringParser.java
/** * Copyright 2012-2015 Niall Gallagher * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or a...
1,491
35.390244
104
java
cqengine
cqengine-master/code/src/main/java/com/googlecode/cqengine/query/parser/sql/support/SQLAntlrListener.java
/** * Copyright 2012-2015 Niall Gallagher * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or a...
12,749
45.875
147
java
cqengine
cqengine-master/code/src/main/java/com/googlecode/cqengine/query/parser/sql/support/DateMathParser.java
/** * Copyright 2012-2015 Niall Gallagher * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or a...
1,454
28.1
110
java
cqengine
cqengine-master/code/src/main/java/com/googlecode/cqengine/metadata/MetadataEngine.java
/** * Copyright 2012-2019 Niall Gallagher * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or a...
6,046
50.245763
204
java
cqengine
cqengine-master/code/src/main/java/com/googlecode/cqengine/metadata/KeyFrequency.java
package com.googlecode.cqengine.metadata; /** * Represents the frequency (i.e. the count of the number of occurrences of) a given key. */ public interface KeyFrequency<A> { A getKey(); int getFrequency(); }
220
17.416667
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java
cqengine
cqengine-master/code/src/main/java/com/googlecode/cqengine/metadata/SortedAttributeMetadata.java
/** * Copyright 2012-2019 Niall Gallagher * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or a...
9,637
47.432161
158
java
cqengine
cqengine-master/code/src/main/java/com/googlecode/cqengine/metadata/AttributeMetadata.java
package com.googlecode.cqengine.metadata; import com.googlecode.cqengine.IndexedCollection; import com.googlecode.cqengine.attribute.Attribute; import com.googlecode.cqengine.index.support.*; import com.googlecode.cqengine.query.option.QueryOptions; import java.util.Spliterator; import java.util.Spliterators; import ...
4,676
38.974359
146
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/DynaMo/ModularityOptimizer_DynaMo.java
package org.dzhuang.dynamic.DynaMo; /** * ModularityOptimizer * * @author Ludo Waltman * @author Nees Jan van Eck * @author Di Zhuang * @version 09/04/18 */ import java.io.BufferedReader; import java.io.BufferedWriter; import java.io.FileReader; import java.io.FileWriter; import java.io.IOException; import jav...
17,094
45.078167
148
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/DynaMo/EdgeSort.java
package org.dzhuang.dynamic.DynaMo; import java.io.IOException; import java.util.ArrayList; import java.util.Collections; import java.util.Comparator; import java.util.List; /** * EdgeSort * * @author Di Zhuang * @version 09/03/18 */ public class EdgeSort { public int node1; public int node2; public double...
1,349
21.881356
60
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/DynaMo/DyPerm.java
package org.dzhuang.dynamic.DynaMo; import java.io.BufferedReader; import java.io.BufferedWriter; import java.io.FileReader; import java.io.FileWriter; import java.io.IOException; import java.io.PrintWriter; import java.util.ArrayList; import java.util.HashMap; import java.util.HashSet; import java.util.Map; import ja...
17,139
39.234742
169
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/DynaMo/Arrays2.java
package org.dzhuang.dynamic.DynaMo; /** * Arrays2 * * @author Ludo Waltman * @author Nees Jan van Eck * @version 1.3.1, 11/17/14 */ import java.util.Arrays; import java.util.Random; public class Arrays2{ public static double calcSum(double[] value){ double sum; int i; sum = 0; ...
2,692
23.935185
105
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/DynaMo/Network.java
package org.dzhuang.dynamic.DynaMo; /** * Network * * @author Ludo Waltman * @author Nees Jan van Eck * @version 1.3.1, 08/30/15 */ import java.io.FileInputStream; import java.io.FileOutputStream; import java.io.IOException; import java.io.ObjectInputStream; import java.io.ObjectOutputStream; import java.io.Ser...
23,982
35.671254
197
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/DynaMo/Clustering.java
package org.dzhuang.dynamic.DynaMo; /** * Clustering * * @author Ludo Waltman * @author Nees Jan van Eck * @version 1.3.1 11/17/14 */ import java.io.FileInputStream; import java.io.FileOutputStream; import java.io.IOException; import java.io.ObjectInputStream; import java.io.ObjectOutputStream; import java.io.S...
4,775
25.983051
104
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/DynaMo/VOSClusteringTechnique.java
package org.dzhuang.dynamic.DynaMo; import java.util.HashMap; /** * VOSClusteringTechnique * * @author Ludo Waltman * @author Nees Jan van Eck * @version 1.3.1, 11/23/14 */ import java.util.Random; public class VOSClusteringTechnique{ protected Network network; protected Clustering clustering; pro...
12,304
33.759887
126
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/DynaMo/ModularityOptimizer_Louvain.java
package org.dzhuang.dynamic.DynaMo; import java.io.BufferedWriter; import java.io.FileWriter; import java.io.IOException; import java.io.PrintWriter; import java.util.Random; public class ModularityOptimizer_Louvain{ public static double resolution_default=1.0; public static int nRandomStarts_default=10; public st...
3,435
38.953488
116
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/util/Parameter.java
package org.dzhuang.dynamic.util; import java.text.DecimalFormat; import java.text.SimpleDateFormat; public class Parameter { public static int HASH_BASE = 10000; //The hash base public static String ROOT_PATH = "E:/experiment/paper-00"; public static final SimpleDateFormat sdf = new SimpleDateFormat("yyyy-...
484
27.529412
88
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/util/DateUtil.java
package org.dzhuang.dynamic.util; import java.util.Calendar; public class DateUtil { public static long nextSecond(long timeStamp){ return timeStamp + 1; } public static long nextMinute(long timeStamp){ return timeStamp + 60; } public static long nextHour(long timeStamp){ long end = timeStamp + 60 * ...
1,229
21.777778
61
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/util/Utility.java
package org.dzhuang.dynamic.util; import org.dzhuang.dynamic.graph.*; import java.text.DecimalFormat; import java.util.*; import java.io.*; public class Utility { public static void main(String args[]) throws Exception{ ArrayList<Integer> random = randomOrderList(10000); ArrayList<Integer> sortedList = new Ar...
11,221
26.572482
94
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/util/FileUtil.java
package org.dzhuang.dynamic.util; import java.io.BufferedOutputStream; import java.io.BufferedReader; import java.io.BufferedWriter; import java.io.File; import java.io.FileInputStream; import java.io.FileOutputStream; import java.io.FileReader; import java.io.FileWriter; import java.text.DecimalFormat; import java.te...
27,325
32.446756
150
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/comm/CommFileUtil.java
package org.dzhuang.dynamic.comm; import java.util.*; import java.io.*; import org.dzhuang.dynamic.util.Parameter; import org.dzhuang.dynamic.util.Utility; import org.dzhuang.dynamic.util.FileUtil; public class CommFileUtil { /** * transform the community file from hierarchical format to format 1 * input form...
3,839
31.268908
119
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/comm/NMI.java
package org.dzhuang.dynamic.comm; import java.util.*; import java.io.*; import org.dzhuang.dynamic.util.Parameter; import org.dzhuang.dynamic.util.Utility; public class NMI { public static void main(String args[]) throws Exception{ double nmi = getNMI(Parameter.ROOT_PATH + "/enron/enron_comm_inc_04.txt", P...
5,970
29.620513
95
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/comm/CommFileFormat.java
package org.dzhuang.dynamic.comm; public class CommFileFormat { public static final int HIERARCHICAL = 0; public static final int NODE_TO_COMM = 1; public static final int COMM_TO_NODE = 2; }
197
21
42
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/graph/Link.java
package org.dzhuang.dynamic.graph; public class Link implements Comparable<Link>{ public int src; public int dest; public Link(int src, int dest){ if(src < dest){ this.src = src; this.dest = dest; } else{ this.src = dest; this.dest = src; } } public int compareTo(Link o){ Link e = (Lin...
519
12.684211
46
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/graph/Edge.java
package org.dzhuang.dynamic.graph; import java.util.*; public class Edge implements Comparable{ public static void main(String args[]){ TreeSet<Edge> edgeSet = new TreeSet(); edgeSet.add(new Edge(2,1)); System.out.println(edgeSet.contains(new Edge(1,2))); } public int src; public int dest; public doubl...
941
14.7
54
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/graph/Pair.java
package org.dzhuang.dynamic.graph; public class Pair implements Comparable<Pair>{ public int key; public double value; public Pair(int key, double value){ this.key = key; this.value = value; } public int compareTo(Pair t){ if(this.value > t.value) return 1; else if(this.value < t.value) return -...
344
17.157895
46
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/graph/Clique3.java
package org.dzhuang.dynamic.graph; public class Clique3 { public int nodes[]; public Clique3(int n1, int n2, int n3){ nodes = new int[]{n1, n2, n3}; } public static boolean IsConnected(Clique3 c1, Clique3 c2){ boolean connected = false; int counter = 0; for(int i = 0; i < 3; i++){ for(int j = 0; j...
721
17.05
59
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/graph/PointStr.java
package org.dzhuang.dynamic.graph; import org.dzhuang.dynamic.util.Parameter; public class PointStr { String i; String j; public PointStr(String i, String j){ this.i = i; this.j = j; } public boolean equals(Object o){ PointStr p = (PointStr)o; if(i == p.i && j == p.j) return true; else retu...
597
13.585366
57
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/graph/Data.java
package org.dzhuang.dynamic.graph; public class Data implements Comparable{ public String from; public String to; public long timestamp; public Data(String from, String to, long timestamp){ this.from = from; this.to = to; this.timestamp = timestamp; } public int compareTo(Object o){ Data data = (Data)o...
696
19.5
53
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/graph/DirectedEdge.java
package org.dzhuang.dynamic.graph; import java.util.*; public class DirectedEdge implements Comparable{ public int src; public int dest; public double weight; public DirectedEdge(int src, int dest){ this.src = src; this.dest = dest; this.weight = 1; } public DirectedEdge(int src, int dest, double we...
642
14.309524
55
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/graph/Point.java
package org.dzhuang.dynamic.graph; import org.dzhuang.dynamic.util.Parameter; public class Point { public Point(int i, int j){ this.i = i; this.j = j; } int i; int j; public boolean equals(Object o){ Point p = (Point)o; if(i == p.i && j == p.j) return true; else return false; } public i...
539
12.170732
42
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/graph/LabelEdge.java
package org.dzhuang.dynamic.graph; import java.util.*; public class LabelEdge implements Comparable{ public String src; public String dest; public double weight; public LabelEdge(String src, String dest){ if(src.compareTo(dest) < 0){ this.src = src; this.dest = dest; } else{ this.src = dest; ...
966
15.672414
58
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/OtherAlgorithms/LearnIncLr.java
package org.dzhuang.dynamic.OtherAlgorithms; import java.util.*; import java.io.*; import java.text.*; import org.dzhuang.dynamic.comm.NMI; import org.dzhuang.dynamic.graph.*; import org.dzhuang.dynamic.util.*; import toolbox.lr.*; public class LearnIncLr { ArrayList<Double> neighWeight; //the weight from node u...
44,937
34.921663
159
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/OtherAlgorithms/BatchInc.java
/** * The Bath Incremental algorithm * */ package org.dzhuang.dynamic.OtherAlgorithms; import java.io.*; import java.util.*; import org.dzhuang.dynamic.util.*; import org.dzhuang.dynamic.graph.*; import org.dzhuang.dynamic.comm.NMI; public class BatchInc { public CommGraph g0; public static void main(Strin...
32,268
35.544734
193
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/OtherAlgorithms/NodeType.java
package org.dzhuang.dynamic.OtherAlgorithms; public class NodeType { //define the type of nodes in tha hierarchical community structure public static int NODE = 0; //the normal node, which is the leaf nodes public static int COMM = 1; // the community node, which contains children }
291
31.444444
76
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/OtherAlgorithms/QCA.java
package org.dzhuang.dynamic.OtherAlgorithms; import java.util.*; import java.io.*; import org.dzhuang.dynamic.comm.NMI; import org.dzhuang.dynamic.graph.*; import org.dzhuang.dynamic.util.*; public class QCA { ArrayList<Double> neighWeight; //the weight from node u to its neighbor communities ArrayList<Integer>...
36,170
33.67977
141
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/OtherAlgorithms/SampleGenerator3.java
/** * LouvainRefine Algorithm */ package org.dzhuang.dynamic.OtherAlgorithms; import java.io.BufferedReader; import java.io.BufferedWriter; import java.io.FileReader; import java.io.FileWriter; import java.util.ArrayList; import java.util.HashMap; import java.util.HashSet; import java.util.Iterator; import java.util...
28,219
30.636771
138
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/OtherAlgorithms/CommNode.java
package org.dzhuang.dynamic.OtherAlgorithms; public class CommNode { public int id; public int type = NodeType.NODE; public int pId = -1; //the parent id the the node (if any), if no parent (root nodes), pId=-1 public CommNode(int id, int type, int pId){ this.id = id; this.type = type; this.pId = pId;...
327
18.294118
95
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/OtherAlgorithms/GreMod.java
package org.dzhuang.dynamic.OtherAlgorithms; import java.util.*; import java.io.*; import java.text.*; import org.dzhuang.dynamic.util.FileUtil; import org.dzhuang.dynamic.util.Parameter; import org.dzhuang.dynamic.util.Utility; public class GreMod{ Community comm; public static void main(String args[]) throws...
13,578
32.528395
132
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/OtherAlgorithms/Louvain.java
/** * Louvain�㷨 */ package org.dzhuang.dynamic.OtherAlgorithms; import java.io.*; import java.util.*; import org.dzhuang.dynamic.util.FileUtil; import org.dzhuang.dynamic.util.Parameter; import org.dzhuang.dynamic.util.Utility; public class Louvain { ArrayList<Double> neighWeight; ArrayList<Integer> neighPos; ...
22,749
34.658307
193
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/OtherAlgorithms/LearnIncSvm.java
package org.dzhuang.dynamic.OtherAlgorithms; import java.util.*; import java.io.*; import java.text.*; import libsvm.*; import org.dzhuang.dynamic.comm.NMI; import org.dzhuang.dynamic.graph.*; import org.dzhuang.dynamic.util.*; import toolbox.*; import toolbox.lr.*; import toolbox.svm.*; public class LearnIncSvm { ...
45,423
34.130704
159
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/Runnable/runALL.java
package org.dzhuang.dynamic.Runnable; import java.io.BufferedReader; import java.io.BufferedWriter; import java.io.File; import java.io.FileReader; import java.io.FileWriter; import java.io.IOException; import java.io.PrintWriter; import java.util.ArrayList; import java.util.Arrays; import java.util.HashMap; import ja...
31,559
43.388186
148
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/Runnable/ParamParser.java
package org.dzhuang.dynamic.Runnable; import java.util.*; public class ParamParser { public static HashMap<String, String> parseParam(String args[]){ HashMap<String, String> paramMap = new HashMap(); for(int i = 0; i < args.length; i++){ if(args[i] != null && args[i].trim().length() > 1){ if(args[i].cha...
915
25.171429
68
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/Runnable/RunAlgorithm.java
/** * Run the incremental algorithm */ package org.dzhuang.dynamic.Runnable; import java.io.BufferedReader; import java.io.BufferedWriter; import java.io.File; import java.io.FileReader; import java.io.FileWriter; import java.io.PrintWriter; import java.util.ArrayList; import java.util.HashMap; import org.dzhuang.d...
13,273
39.346505
144
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/preprocessing/ToComparison.java
package org.dzhuang.dynamic.preprocessing; import java.io.BufferedReader; import java.io.File; import java.io.FileOutputStream; import java.io.FileReader; import java.io.IOException; import java.io.PrintWriter; import java.util.ArrayList; import java.util.Arrays; import java.util.HashMap; import java.util.HashSet; imp...
9,931
35.921933
115
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/org/dzhuang/dynamic/preprocessing/toDynaMo.java
package org.dzhuang.dynamic.preprocessing; import java.io.BufferedReader; import java.io.File; import java.io.FileReader; import java.io.IOException; import java.io.PrintWriter; import java.util.ArrayList; import java.util.Arrays; import java.util.HashSet; import org.dzhuang.dynamic.DynaMo.Network; import org.dzhuang...
6,405
33.627027
105
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/toolbox/ClassifierUtil.java
package toolbox; import java.io.*; import java.util.*; import libsvm.*; import toolbox.lr.*; import toolbox.svm.*; import org.dzhuang.dynamic.util.Parameter; import org.dzhuang.dynamic.util.Utility; public class ClassifierUtil { /** * remove the duplicate samples * @param sampleList * @return */ public ...
6,921
28.708155
108
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/toolbox/lr/LogisticRegression.java
/** * The logistic regression classification model */ package toolbox.lr; import java.io.BufferedReader; import java.io.FileReader; import java.util.*; import toolbox.ClassifierUtil; import org.dzhuang.dynamic.util.Utility; public class LogisticRegression { public static void main(String args[]) throws Exceptio...
10,133
26.840659
114
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/toolbox/lr/SampleScale.java
package toolbox.lr; public class SampleScale { public static double logScale(int value){ return Math.log(value); } }
125
11.6
42
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/toolbox/lr/VectorUtil.java
package toolbox.lr; public class VectorUtil { /** * * @param data1 * @param data2 * @return */ public static double[] add(double data1[], double data2[]){ double result[] = new double[data1.length]; for(int i = 0; i < data1.length; i++) result[i] = data1[i] + data2[i]; return result; } /** ...
2,852
18.277027
71
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/toolbox/lr/SampleType.java
package toolbox.lr; public class SampleType { public static final int POSITIVE = 1; public static final int NEGATIVE = 0; }
128
15.125
38
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/toolbox/lr/Sample.java
package toolbox.lr; import org.dzhuang.dynamic.util.Parameter; public class Sample implements Comparable{ public double data[]; public int type; public Sample(double data[], int type){ this.data = data; this.type = type; } public String toString(){ if(data.length == 0) return "[]"; String str = "[...
1,231
17.953846
74
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/toolbox/lr/Param.java
package toolbox.lr; import org.dzhuang.dynamic.util.Parameter; public class Param { public double data[]; //����ֵ public Param(int paramNum, double initValue){ data = new double[paramNum]; for(int i = 0; i < data.length; i++) data[i] = initValue; } public Param(double data[]){ this.data = data; } ...
678
17.861111
50
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/toolbox/svm/SvmSample.java
package toolbox.svm; import libsvm.*; public class SvmSample { public svm_node[] x; public int type; public SvmSample(svm_node x[], int type){ this.x = x; this.type = type; } }
192
11.0625
42
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/toolbox/svm/SVM.java
package toolbox.svm; import java.util.*; import java.io.*; import toolbox.*; import toolbox.lr.*; import toolbox.svm.*; import libsvm.*; public class SVM { public static void trainModel(String trainPath, String modelPath, double n2pRatio, int maxSize) throws Exception{ ArrayList<Sample> trainList = ClassifierUt...
4,396
38.972727
135
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/toolbox/svm/svm_toy.java
package toolbox.svm; import libsvm.*; import java.applet.*; import java.awt.*; import java.util.*; import java.awt.event.*; import java.io.*; public class svm_toy extends Applet { static final String DEFAULT_PARAM="-t 2 -c 100"; int XLEN; int YLEN; // off-screen buffer Image buffer; Graphics buffer_gc; // ...
12,291
23.340594
104
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/toolbox/svm/svm_scale.java
package toolbox.svm; import libsvm.*; import java.io.*; import java.util.*; import java.text.DecimalFormat; public class svm_scale { private String line = null; private double lower = -1.0; private double upper = 1.0; private double y_lower; private double y_upper; private boolean y_scaling = false; private do...
8,973
24.422096
85
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/toolbox/svm/svm_train.java
package toolbox.svm; import libsvm.*; import java.io.*; import java.util.*; public class svm_train { private svm_parameter param; // set by parse_command_line private svm_problem prob; // set by read_problem private svm_model model; private String input_file_name; // set by parse_command_line private String m...
8,376
25.096573
115
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/toolbox/svm/svm_predict.java
package toolbox.svm; import libsvm.*; import java.io.*; import java.util.*; public class svm_predict { public static svm_print_interface svm_print_null = new svm_print_interface() { public void print(String s) {} }; public static svm_print_interface svm_print_stdout = new svm_print_interface() { public void...
4,972
24.372449
183
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/toolbox/svm/libsvm/svm.java
package toolbox.svm.libsvm; import java.io.*; import java.util.*; // // Kernel Cache // // l is the number of total data items // size is the cache size limit in bytes // class Cache { private final int l; private long size; private final class head_t { head_t prev, next; // a cicular list float[] data; int ...
63,810
21.429174
145
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/toolbox/svm/libsvm/svm_problem.java
package toolbox.svm.libsvm; public class svm_problem implements java.io.Serializable { public int l; public double[] y; public svm_node[][] x; }
148
17.625
56
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/toolbox/svm/libsvm/svm_print_interface.java
package toolbox.svm.libsvm; public interface svm_print_interface { public void print(String s); }
99
15.666667
36
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/toolbox/svm/libsvm/svm_model.java
// // svm_model // package toolbox.svm.libsvm; public class svm_model implements java.io.Serializable { public svm_parameter param; // parameter public int nr_class; // number of classes, = 2 in regression/one class svm public int l; // total #SV public svm_node[][] SV; // SVs (SV[l]) public double[][] sv_coef;...
880
37.304348
133
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/toolbox/svm/libsvm/svm_parameter.java
package toolbox.svm.libsvm; public class svm_parameter implements Cloneable,java.io.Serializable { /* svm_type */ public static final int C_SVC = 0; public static final int NU_SVC = 1; public static final int ONE_CLASS = 2; public static final int EPSILON_SVR = 3; public static final int NU_SVR = 4; /* kernel_t...
1,300
26.104167
68
java
tnetwork
tnetwork-master/tnetwork/DCD/externals/DYNAMO/dynamo-master/src/main/java/toolbox/svm/libsvm/svm_node.java
package toolbox.svm.libsvm; public class svm_node implements java.io.Serializable { public int index; public double value; }
127
17.285714
53
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/optimize/StochasticMetaAscent.java
package cc.mallet.optimize; import java.util.Arrays; import java.util.logging.Logger; import java.text.DecimalFormat; import cc.mallet.optimize.Optimizer; import cc.mallet.types.MatrixOps; import cc.mallet.util.MalletLogger; /** * @author Greg Druck * @author Kedar Bellare */ public class StochasticMetaAscent im...
6,663
33.174359
129
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/optimize/GradientAscent.java
/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensou...
3,688
26.325926
152
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/optimize/LineOptimizer.java
/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensou...
1,057
31.060606
91
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/optimize/InvalidOptimizableException.java
/* Copyright (C) 2006 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://mallet.cs.umass.edu/ This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensource.org. For...
1,467
32.363636
90
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/optimize/BackTrackLineSearch.java
/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensou...
7,473
33.127854
115
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/optimize/ConjugateGradient.java
/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensou...
6,495
31.158416
119
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/optimize/OptimizationException.java
/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensou...
1,262
27.066667
88
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/optimize/Optimizer.java
/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensou...
2,560
32.697368
126
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/optimize/LimitedMemoryBFGS.java
/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensou...
10,851
31.785498
134
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/optimize/OptimizableCollection.java
package cc.mallet.optimize; import java.util.ArrayList; import cc.mallet.types.MatrixOps; public class OptimizableCollection { public class ByGradientValue implements Optimizable.ByGradientValue { ArrayList<Optimizable.ByGradientValue> optimizables; public ByGradientValue (Optimizable.ByGradientValue... ...
1,468
23.081967
78
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/optimize/AGIS.java
/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensou...
3,638
25.562044
87
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/optimize/Optimizable.java
/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensou...
2,240
27.730769
94
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/optimize/GradientBracketLineOptimizer.java
/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensou...
7,403
36.02
148
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/optimize/OptimizerEvaluator.java
/* Copyright (C) 2003 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensou...
1,742
36.891304
118
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/optimize/OrthantWiseLimitedMemoryBFGS.java
package cc.mallet.optimize; import java.util.LinkedList; import java.util.logging.Logger; import cc.mallet.types.MatrixOps; import cc.mallet.util.MalletLogger; /** * Implementation of orthant-wise limited memory quasi Newton method for * optimizing convex L1-regularized objectives. See: * "Scalable training of l1...
10,587
24.761557
78
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/optimize/tests/TestOptimizer.java
/* Copyright (C) 2003 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensource.org....
3,138
25.601695
76
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/optimize/tests/TestOptimizable.java
/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensou...
12,416
35.736686
127
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/examples/TestCRFPipe.java
package cc.mallet.examples; import java.io.*; import java.util.*; import java.util.regex.*; import java.util.zip.*; import cc.mallet.fst.*; import cc.mallet.pipe.*; import cc.mallet.pipe.iterator.*; import cc.mallet.pipe.tsf.*; import cc.mallet.types.*; import cc.mallet.util.*; public class TestCRFPipe { public T...
1,871
31.275862
191
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/examples/TrainCRF.java
package cc.mallet.examples; import java.io.*; import java.util.*; import java.util.regex.*; import java.util.zip.*; import cc.mallet.fst.*; import cc.mallet.pipe.*; import cc.mallet.pipe.iterator.*; import cc.mallet.pipe.tsf.*; import cc.mallet.types.*; import cc.mallet.util.*; public class TrainCRF { public Trai...
2,736
36.493151
191
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/examples/TrainHMM.java
package cc.mallet.examples; import java.io.*; import java.util.*; import java.util.regex.*; import java.util.zip.*; import cc.mallet.fst.*; import cc.mallet.pipe.*; import cc.mallet.pipe.iterator.*; import cc.mallet.pipe.tsf.*; import cc.mallet.types.*; import cc.mallet.util.*; public class TrainHMM { public Trai...
1,778
32.566038
191
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/classify/ClassifierEnsemble.java
package cc.mallet.classify; import cc.mallet.types.Instance; import cc.mallet.types.LabelVector; import cc.mallet.types.MatrixOps; /* Copyright (C) 2005 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum...
2,586
36.492754
105
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/classify/MaxEntOptimizableByLabelDistribution.java
package cc.mallet.classify; import java.io.Serializable; import java.util.Arrays; import java.util.Iterator; import java.util.logging.Logger; import cc.mallet.optimize.LimitedMemoryBFGS; import cc.mallet.optimize.Optimizable; import cc.mallet.types.Alphabet; import cc.mallet.types.FeatureSelection; import cc.mallet.t...
11,537
36.099678
138
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/classify/MaxEntTrainer.java
/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensou...
17,756
34.443114
122
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/classify/Boostable.java
/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensou...
719
30.304348
91
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/classify/FeatureSelectingClassifierTrainer.java
/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensou...
1,601
30.411765
91
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/classify/BaggingTrainer.java
/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensou...
1,616
30.096154
91
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/classify/RankMaxEntTrainer.java
/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensou...
22,759
38.651568
119
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/classify/BalancedWinnow.java
/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensou...
4,752
33.693431
99
java
twitter_nlp
twitter_nlp-master/mallet-2.0.6/src/cc/mallet/classify/MaxEntGETrainer.java
/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensou...
4,755
30.084967
141
java