repo stringlengths 2 99 | file stringlengths 13 225 | code stringlengths 0 18.3M | file_length int64 0 18.3M | avg_line_length float64 0 1.36M | max_line_length int64 0 4.26M | extension_type stringclasses 1
value |
|---|---|---|---|---|---|---|
lightkurve | lightkurve-main/tests/io/test_pathos.py | import pytest
from astropy.io import fits
import numpy as np
from numpy.testing import assert_array_equal
from lightkurve import search_lightcurve
from lightkurve.io.pathos import read_pathos_lightcurve
from lightkurve.io.detect import detect_filetype
@pytest.mark.remote_data
def test_detect_pathos():
"""Can we... | 2,016 | 35.672727 | 150 | py |
lightkurve | lightkurve-main/tests/io/test_eleanor.py | import pytest
from astropy.io import fits
from astropy.utils.data import get_pkg_data_filename
import numpy as np
from numpy.testing import assert_array_equal
from lightkurve import search_lightcurve
from lightkurve.io.eleanor import read_eleanor_lightcurve
from lightkurve.io.detect import detect_filetype
@pytest.m... | 3,179 | 41.972973 | 99 | py |
lightkurve | lightkurve-main/tests/io/test_tasoc.py | import pytest
from astropy.io import fits
import numpy as np
from numpy.testing import assert_array_equal
from lightkurve import search_lightcurve
from lightkurve.io.tasoc import read_tasoc_lightcurve
from lightkurve.io.detect import detect_filetype
# The URL needs to be updated upon a new TASOC data release.
TEST_... | 1,425 | 29.340426 | 192 | py |
lightkurve | lightkurve-main/tests/io/test_qlp.py | import pytest
from astropy.io import fits
import numpy as np
from numpy.testing import assert_array_equal
from lightkurve import search_lightcurve
from lightkurve.io.qlp import read_qlp_lightcurve
from lightkurve.io.detect import detect_filetype
@pytest.mark.remote_data
def test_qlp():
"""Can we read in QLP lig... | 1,259 | 35 | 164 | py |
lightkurve | lightkurve-main/tests/io/__init__.py | 0 | 0 | 0 | py | |
lightkurve | lightkurve-main/tests/io/test_read.py | import os
import warnings
import tempfile
import pytest
from lightkurve.utils import LightkurveDeprecationWarning, LightkurveError
from lightkurve import (
PACKAGEDIR,
KeplerTargetPixelFile,
TessTargetPixelFile,
LightCurve,
)
from lightkurve.io import read
from .. import TESTDATA
def test_read():
... | 4,482 | 38.672566 | 115 | py |
lightkurve | lightkurve-main/tests/correctors/test_pldcorrector.py | import pytest
import matplotlib.pyplot as plt
from lightkurve import (
search_targetpixelfile,
search_tesscut,
KeplerLightCurve,
TessLightCurve,
)
from lightkurve.correctors import PLDCorrector
@pytest.mark.remote_data
def test_kepler_pld_corrector():
tpf = search_targetpixelfile("K2-199")[0].do... | 3,818 | 34.036697 | 79 | py |
lightkurve | lightkurve-main/tests/correctors/test_sparsedesignmatrix.py | import pytest
import warnings
import numpy as np
from numpy.testing import assert_array_equal
import pandas as pd
from scipy import sparse
from lightkurve.correctors import (
SparseDesignMatrix,
SparseDesignMatrixCollection,
DesignMatrix,
DesignMatrixCollection,
)
from lightkurve import LightkurveWarn... | 6,374 | 33.274194 | 88 | py |
lightkurve | lightkurve-main/tests/correctors/test_sffcorrector.py | """Tests the `lightkurve.correctors.SFFCorrector` class."""
import pytest
import warnings
import numpy as np
from astropy.utils.data import get_pkg_data_filename
from numpy.testing import assert_array_equal
from lightkurve import (
LightCurve,
KeplerLightCurve,
TessLightCurve,
LightkurveWarning,
s... | 8,492 | 32.972 | 92 | py |
lightkurve | lightkurve-main/tests/correctors/test_cbvcorrector.py | """ cbvcorrector.py module unit tests
"""
import pytest
from numpy.testing import (
assert_almost_equal,
assert_array_equal,
assert_allclose,
assert_raises,
)
import warnings
import numpy as np
import matplotlib
import matplotlib.pyplot as plt
import astropy.units as u
import pandas as pd
from astropy... | 21,005 | 36.780576 | 110 | py |
lightkurve | lightkurve-main/tests/correctors/test_designmatrix.py | import pytest
import warnings
import numpy as np
from numpy.testing import assert_array_equal
import pandas as pd
from lightkurve.correctors import DesignMatrix, DesignMatrixCollection
from lightkurve import LightkurveWarning
def test_designmatrix_basics():
"""Can we create a design matrix from a dataframe?"""
... | 4,720 | 32.246479 | 87 | py |
lightkurve | lightkurve-main/tests/correctors/__init__.py | 0 | 0 | 0 | py | |
lightkurve | lightkurve-main/tests/correctors/test_metrics.py | import numpy as np
import pytest
from numpy.testing import assert_allclose
from lightkurve import LightCurve, search_lightcurve
from lightkurve.correctors.metrics import (
overfit_metric_lombscargle,
underfit_metric_neighbors,
_compute_correlation,
_align_to_lc,
)
def test_overfit_metric_lombscargle(... | 3,718 | 35.106796 | 96 | py |
lightkurve | lightkurve-main/tests/correctors/test_regressioncorrector.py | """Unit tests for the `RegressionCorrector` class."""
import warnings
import numpy as np
from numpy.testing import assert_almost_equal
import pandas as pd
import pytest
from lightkurve import LightCurve, LightkurveWarning
from lightkurve.correctors import RegressionCorrector, DesignMatrix
def test_regressioncorrect... | 4,463 | 36.512605 | 87 | py |
lightkurve | lightkurve-main/tests/prf/__init__.py | 0 | 0 | 0 | py | |
lightkurve | lightkurve-main/tests/prf/test_tpfmodel.py | """Test the features of the lightkurve.prf.tpfmodels module."""
import os
import pytest
from astropy.io import fits
import numpy as np
from numpy.testing import assert_allclose
from scipy.stats import mode
from lightkurve.prf import FixedValuePrior, GaussianPrior, UniformPrior
from lightkurve.prf import StarPrior, Ba... | 7,272 | 35.547739 | 86 | py |
lightkurve | lightkurve-main/tests/prf/test_prfmodel.py | """Test the features of the lightkurve.prf.prfmodels module."""
from __future__ import division, print_function
from collections import OrderedDict
from astropy.io import fits
from astropy.utils.data import get_pkg_data_filename
import numpy as np
from numpy.testing import assert_allclose
import pytest
from lightkurv... | 4,845 | 35.164179 | 87 | py |
lightkurve | lightkurve-main/tests/seismology/test_butler.py | import pytest
from astropy import units as u
import matplotlib.pyplot as plt
import numpy as np
from scipy.signal import unit_impulse as deltafn
from lightkurve.search import search_lightcurve
from lightkurve.periodogram import Periodogram
from lightkurve.periodogram import SNRPeriodogram
@pytest.mark.remote_data
de... | 14,457 | 37.657754 | 87 | py |
lightkurve | lightkurve-main/tests/seismology/__init__.py | 0 | 0 | 0 | py | |
lightkurve | lightkurve-main/tests/seismology/test_stellar_estimators.py | from astropy import units as u
import numpy as np
from uncertainties import ufloat
from lightkurve.seismology.stellar_estimators import (
NUMAX_SOL,
DELTANU_SOL,
TEFF_SOL,
G_SOL,
estimate_radius,
estimate_mass,
estimate_logg,
)
cM = ufloat(1.30, 0.09)
cR = ufloat(9.91, 0.24)
clogg = ufloa... | 6,995 | 29.955752 | 85 | py |
lightkurve | lightkurve-main/docs/source/conf.py | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
import os
import sys
sys.path.appe... | 5,016 | 33.363014 | 326 | py |
YouTube-GDD | YouTube-GDD-main/tools/download.py | from pytube import YouTube
import argparse
import os
parser = argparse.ArgumentParser(description='Download YouTube videos')
parser.add_argument('--videolist', default='./configs/videolist.txt')
parser.add_argument('--videopath', default='videos')
args = parser.parse_args()
if __name__ == '__main__':
if not os.path... | 830 | 32.24 | 131 | py |
YouTube-GDD | YouTube-GDD-main/tools/select.py | import argparse
import os
import shutil
import numpy as np
parser = argparse.ArgumentParser(description='Select YouTube-GDD images')
parser.add_argument('--imagelist', default='./configs/imagelist.npy')
parser.add_argument('--framepath', default='frames')
parser.add_argument('--imagepath', default='images')
args = pa... | 839 | 37.181818 | 73 | py |
YouTube-GDD | YouTube-GDD-main/tools/extract.py | import argparse
import os
import cv2
import math
parser = argparse.ArgumentParser(description='Extract YouTube frames')
parser.add_argument('--videopath', default='videos')
parser.add_argument('--framepath', default='frames')
def extract_frames(video_path, dst_folder, extract_frequency, abstract_name, frame_rate, in... | 1,354 | 32.875 | 114 | py |
r-AdjNorm | r-AdjNorm-main/src/main.py | '''
Tensorflow Implementation of r-Adjnorm model in:
Minghao Zhao et al. Investigating Accuracy-Novelty Performance for Graph-based Collaborative Filtering. In SIGIR 2022.
@author: Minghao Zhao([email protected])
'''
####################################################
# This section of code adapted from W... | 26,223 | 43.674617 | 282 | py |
r-AdjNorm | r-AdjNorm-main/src/utility/parser.py | '''
Tensorflow Implementation of r-Adjnorm model in:
Minghao Zhao et al. Investigating Accuracy-Novelty Performance for Graph-based Collaborative Filtering. In SIGIR 2022.
@author: Minghao Zhao([email protected])
'''
####################################################
# This section of code adapted from W... | 6,115 | 52.182609 | 135 | py |
r-AdjNorm | r-AdjNorm-main/src/utility/helper.py | '''
Tensorflow Implementation of r-Adjnorm model in:
Minghao Zhao et al. Investigating Accuracy-Novelty Performance for Graph-based Collaborative Filtering. In SIGIR 2022.
@author: Minghao Zhao([email protected])
'''
####################################################
# This section of code adapted from W... | 1,743 | 30.142857 | 119 | py |
r-AdjNorm | r-AdjNorm-main/src/utility/batch_test.py | '''
Tensorflow Implementation of r-Adjnorm model in:
Minghao Zhao et al. Investigating Accuracy-Novelty Performance for Graph-based Collaborative Filtering. In SIGIR 2022.
@author: Minghao Zhao([email protected])
'''
####################################################
# This section of code adapted from W... | 10,127 | 34.044983 | 119 | py |
r-AdjNorm | r-AdjNorm-main/src/utility/metrics.py | '''
Tensorflow Implementation of r-Adjnorm model in:
Minghao Zhao et al. Investigating Accuracy-Novelty Performance for Graph-based Collaborative Filtering. In SIGIR 2022.
@author: Minghao Zhao([email protected])
'''
####################################################
# This section of code adapted from W... | 2,935 | 26.185185 | 119 | py |
r-AdjNorm | r-AdjNorm-main/src/utility/load_data.py | '''
Tensorflow Implementation of r-Adjnorm model in:
Minghao Zhao et al. Investigating Accuracy-Novelty Performance for Graph-based Collaborative Filtering. In SIGIR 2022.
@author: Minghao Zhao([email protected])
'''
####################################################
# This section of code adapted from W... | 15,834 | 36.434988 | 178 | py |
ec-local-rings | ec-local-rings-main/zfx_fast.py | from itertools import combinations_with_replacement
from time import time
from math import factorial
class Monom:
def __init__(self, a=(0,0,0,0,0,0), x=0, z=0):
self.a = a # len(a) == 6 !!!
self.x = x
self.z = z
def get_deg(self):
# Total degree of m: deg(x) + 3deg(z)
return self.x + 3*self.z
def get_si... | 3,079 | 20.690141 | 78 | py |
ec-local-rings | ec-local-rings-main/zfxred_fast.py | from itertools import combinations_with_replacement
from time import time
from math import factorial
class Monom:
def __init__(self, a=(0,0,0), x=0, z=0):
# a = (a_0, A, B)
self.a = a # len(a) == 3 !!!
self.x = x
self.z = z
def get_deg(self):
# Total degree of m: deg(x) + 3deg(z)
return self.x + 3*self.... | 3,213 | 20.284768 | 78 | py |
ChromaStarPy | ChromaStarPy-master/CSGasEst.py | # -*- coding: utf-8 -*-
"""
Created on Tue May 7 11:25:12 2019
@author: Philip D. Bennett
Port from FORTRAN to Python: Ian Short
"""
import math
import numpy
#from scipy.linalg.blas import daxpy
#from scipy.linalg.blas import ddot
#from scipy.linalg.blas import dscal
#from scipy.linalg.blas import idamax
#import Do... | 19,667 | 28.443114 | 122 | py |
ChromaStarPy | ChromaStarPy-master/vegatest.py | # -*- coding: utf-8 -*-
"""
Created on Wed Aug 30 10:54:21 2017
@author: ishort
"""
#plotting:
import matplotlib
import matplotlib.pyplot as plt
#%matplotlib inline
import pylab
from astropy.io import fits
import numpy
import Gauss2
#General file for printing ad hoc quantities
#dbgHandle = open("debug.out", 'w')
... | 8,521 | 27.693603 | 131 | py |
ChromaStarPy | ChromaStarPy-master/Flux.py | # -*- coding: utf-8 -*-
"""
Created on Sat Apr 29 17:42:58 2017
@author: Ian
"""
import math
import random
import numpy
import Useful
import ToolBox
def flux(intens, cosTheta):
"""// returns surface flux as a 2XnumLams vector
// - Row 0 linear flux (cgs units)
// - Row 1 log_e flux"""
#//doub... | 11,496 | 38.373288 | 195 | py |
ChromaStarPy | ChromaStarPy-master/FormalSoln.py | # -*- coding: utf-8 -*-
"""
Created on Sat Apr 29 17:29:05 2017
@author: Ian
"""
import math
import Planck
def formalSoln(numDeps, cosTheta, lambda2, tau, temp, lineMode):
"""/**
* Formal solution of the LTE radiative transfer for the monochromatic *surface*
* intensity, I_lambda(Tau=0, theta) at waveleng... | 4,506 | 35.942623 | 106 | py |
ChromaStarPy | ChromaStarPy-master/CSGasData.py |
import CSBlockData
global name, ip, comp, awt, nspec, natom, itab, ntab, indx, iprint, gsinit, print0 #/gasp/
global ipr, nch, nel, ntot, nat, zat, neut, idel, indsp, indzat, iat, natsp, iatsp #/gasp2/
ip = CSBlockData.ip
comp = CSBlockData.comp
awt = CSBlockData.awt
name = CSBlockData.name
ipr = CSBlockData.ipr
nch... | 20,312 | 160.214286 | 295 | py |
ChromaStarPy | ChromaStarPy-master/PostProcess.py | # -*- coding: utf-8 -*-
"""
Created on Wed May 3 12:20:48 2017
@author: ishort
"""
"""/**** Routines for client side post-processing of raw model atmosphere/spectrum
* synthesis output from server to produce synthetic observables
*/"""
import math
import numpy
import Useful
import ToolBox
nm2cm = 1.0e-7
def UBV... | 40,742 | 34.305893 | 178 | py |
ChromaStarPy | ChromaStarPy-master/VegaHgamma.py | #
#
#Custom filename tags to distinguish from other runs
project = "Project"
runVers = "Run"
#Default plot
#Select ONE only:
#makePlot = "structure"
#makePlot = "sed"
makePlot = "spectrum"
#makePlot = "ldc"
#makePlot = "ft"
#makePlot = "tlaLine"
#Spectrum synthesis mode
# - uses model in Restart.py with minimal str... | 2,690 | 33.063291 | 116 | py |
ChromaStarPy | ChromaStarPy-master/Input.py | #
#
#Custom filename tags to distinguish from other runs
project = "SunEarth"
runVers = "Test"
#Project specific notes:
# Test case:
# Star: Sun
# Spectrum: Na I D region
# Lightcurve: Earth, in plane of ecliptic
#Default plot
#Select ONE only if plotting 'inline' -
makePlotStruc = True
makePlotSED = True
mak... | 3,920 | 35.990566 | 116 | py |
ChromaStarPy | ChromaStarPy-master/Gauss2.py | # -*- coding: utf-8 -*-
"""
Created on Thu Sep 21 16:29:34 2017
@author: ishort
"""
import math
""" procedure to generate Gaussian of unit area when passed a FWHM"""
#IDL: PRO GAUSS2,FWHM,LENGTH,NGAUS
def gauss2(fwhm, length):
#length=length*1l & FWHM=FWHM*1l
#NGAUS=FLTARR(LENGTH)
ngaus = [0.0 ... | 955 | 21.761905 | 72 | py |
ChromaStarPy | ChromaStarPy-master/CSGas.py | # -*- coding: utf-8 -*-
"""
Created on Thu May 2 10:00:46 2019
@author: Philip D. Bennett
Port from FORTRAN to Python: Ian Short
"""
"""
This is the main source file for GAS.
"""
"""
/*
* The openStar project: stellar atmospheres and spectra
*
* ChromaStarPy/GAS
*
* Version 2019-05-02
* Use date based versio... | 38,285 | 34.614884 | 275 | py |
ChromaStarPy | ChromaStarPy-master/Kappas.py | # -*- coding: utf-8 -*-
"""
Created on Mon Apr 24 17:12:02 2017
@author: ishort
"""
import math
import Planck
import Useful
def kappas2(numDeps, pe, zScale, temp, rho, numLams, lambdas, logAHe, \
logNH1, logNH2, logNHe1, logNHe2, Ne, teff, logKapFudge):
"""/* Compute opacities properly from scr... | 32,644 | 39.857322 | 142 | py |
ChromaStarPy | ChromaStarPy-master/LineGrid.py | # -*- coding: utf-8 -*-
"""
Created on Sat Apr 29 13:31:10 2017
@author: Ian
"""
import math
import Useful
"""/**
* Line profile, phi_lambda(lambda): Assume Voigt function profile - need H(a,v)
* Assumes CRD, LTE, ??? Input parameters: lam0 - line center wavelength in nm
* mass - mass of absorbing particle (amu) ... | 10,935 | 31.35503 | 114 | py |
ChromaStarPy | ChromaStarPy-master/MolecData.py | # -*- coding: utf-8 -*-
"""
Created on Fri Apr 28 15:53:32 2017
@author: ishort
"""
#//Various diatomic molecular transition data needed for the
#//Just-overlapping-line-approximation (JOLA)
#// to molecular band opacity
#//Input SYSTEM is a string with both the molecular species AND the band "system"
import math... | 11,055 | 27.791667 | 99 | py |
ChromaStarPy | ChromaStarPy-master/Dgefa.py | # -*- coding: utf-8 -*-
"""
Created on Fri May 3 12:09:11 2019
@author:
"""
import math
import numpy
#from scipy.linalg.blas import daxpy
#from scipy.linalg.blas import ddot
#from scipy.linalg.blas import dscal
#from scipy.linalg.blas import idamax
#from Documents.ChromaStarPy.GAS.blas.Ddot import ddot
#from Docum... | 6,906 | 31.125581 | 119 | py |
ChromaStarPy | ChromaStarPy-master/LevelPopsGasServer.py | # -*- coding: utf-8 -*-
"""
Created on Mon Apr 24 14:13:47 2017
@author: ishort
"""
import math
import Useful
import ToolBox
#import numpy
#JB#
#from matplotlib.pyplot import plot, title, show, scatter
#storage for fits (not all may be used)
uw = []
uwa = []
uwb = []
uwStage = []
uwbStage = []
uwu = []
uwl = []
uua=[... | 54,663 | 39.977511 | 287 | py |
ChromaStarPy | ChromaStarPy-master/TauScale.py | # -*- coding: utf-8 -*-
"""
Created on Fri Apr 21 09:46:06 2017
Create the standard optical depth scale sampling the model vertically - interpreted as the
Rosseland optical depth scale
Uniformly spaced in log(tau)
@author: ishort
"""
import math
def tauScale(numDeps, log10MinDepth, log10MaxDepth):
"""Creat... | 1,367 | 26.918367 | 113 | py |
ChromaStarPy | ChromaStarPy-master/FluxTrans.py | # -*- coding: utf-8 -*-
"""
Created on Sat Apr 29 17:42:58 2017
@author: Ian
"""
import math
import numpy
import random
import numpy
import Useful
import ToolBox
#Returns a vector of reduced fluxes for each angle theta being tannsited by planet
#//
def fluxTrans(intens, flx, lambdas, cosTheta, radius,
... | 2,264 | 31.357143 | 122 | py |
ChromaStarPy | ChromaStarPy-master/T4300g45CaIIHK.py | #
#
#Custom filename tags to distinguish from other runs
project = "Project"
runVers = "Run"
#Default plot
#Select ONE only:
#makePlot = "structure"
#makePlot = "sed"
makePlot = "spectrum"
#makePlot = "ldc"
#makePlot = "ft"
#makePlot = "tlaLine"
#Spectrum synthesis mode
# - uses model in Restart.py with minimal str... | 2,668 | 33.662338 | 116 | py |
ChromaStarPy | ChromaStarPy-master/Hydrostat.py | # -*- coding: utf-8 -*-
"""
Created on Fri Apr 21 16:07:56 2017
@author: ishort
"""
import math
import Useful
def hydroFormalSoln(numDeps, grav, tauRos, kappa, temp, guessPGas):
"""This approach is based on integrating the formal solution of the hydrostaitc equilibrium equation
// on the otical depth (Tau) ... | 4,462 | 33.068702 | 119 | py |
ChromaStarPy | ChromaStarPy-master/Jola.py | # -*- coding: utf-8 -*-
"""
Created on Fri Apr 28 16:10:08 2017
@author: ishort
"""
#/**
# * Collection of methods for computing molecular band opacity in the
# * Just-overlapping-line approximation (JOLA)
# * Just-overlapping line approximation treats molecular ro-vibrational bands as pseudo-continuum
# * opacity so... | 11,506 | 34.736025 | 245 | py |
ChromaStarPy | ChromaStarPy-master/A0Halpha.py | #
#
#Custom filename tags to distinguish from other runs
project = "Project"
runVers = "Run"
#Default plot
#Select ONE only:
#makePlot = "structure"
#makePlot = "sed"
makePlot = "spectrum"
#makePlot = "ldc"
#makePlot = "ft"
#makePlot = "tlaLine"
#Spectrum synthesis mode
# - uses model in Restart.py with minimal str... | 2,668 | 33.217949 | 116 | py |
ChromaStarPy | ChromaStarPy-master/PartitionFn.py | # -*- coding: utf-8 -*-
"""
Created on Mon Apr 24 17:12:02 2017
@author: ishort
"""
import math
def getPartFn(species):
"""// Partition functions at two temperatures (5000 K and 10000 K)
//From Allen's Astrophysical Quantities, 4th Ed.
// CAUTION: Return Base 10 log10 of partition fn"""
#//Ionization stages t... | 107,648 | 29.677971 | 93 | py |
ChromaStarPy | ChromaStarPy-master/TransitLightCurveAnlytc2.py | # -*- coding: utf-8 -*-
"""
Created on Sun Jan 12 13:06:03 2020
@author: iansh
"""
import math
import numpy
import Useful
#import sys
import matplotlib.pyplot as plt
"""
#
# Compute the analytic light curve in the small-planet approximation of Mandel
# and Agol 2002, Eq. Section 5 ("Analytic Lightcurves for Plan... | 4,989 | 34.899281 | 98 | py |
ChromaStarPy | ChromaStarPy-master/TransitLightCurve2.py | # -*- coding: utf-8 -*-
"""
Created on Sun Jan 12 13:06:03 2020
@author: iansh
"""
import math
import numpy
import Useful
#import sys
import matplotlib.pyplot as plt
"""
# Reads in planetary system parameters for a single planet around a single star
#and computes the impact parameter and time coordinate of snapsh... | 3,370 | 33.050505 | 100 | py |
ChromaStarPy | ChromaStarPy-master/State.py | # -*- coding: utf-8 -*-
"""
Created on Fri Apr 21 15:10:06 2017
@author: ishort
"""
import math
import Useful
import AtomicMass
def massDensity(numDeps, temp, press, mmw, zScale):
"""Solves the equation of state (EOS) for the mass density (rho) given total
* pressure from HSE solution, for a mixture of ideal g... | 4,649 | 32.695652 | 127 | py |
ChromaStarPy | ChromaStarPy-master/AlfBooCaIIHK.py | #
#
#Custom filename tags to distinguish from other runs
project = "Project"
runVers = "Run"
#Default plot
#Select ONE only:
#makePlot = "structure"
#makePlot = "sed"
makePlot = "spectrum"
#makePlot = "ldc"
#makePlot = "ft"
#makePlot = "tlaLine"
#Spectrum synthesis mode
# - uses model in Restart.py with minimal str... | 2,865 | 34.382716 | 132 | py |
ChromaStarPy | ChromaStarPy-master/Useful.py | # -*- coding: utf-8 -*-
"""
Created on Fri Apr 21 12:00:20 2017
linear and logarithmic physical constant and conversion factors cgs units
@author: ishort
"""
import math
def c():
return 2.9979249E+10 #// light speed in vaccuum in cm/s
def sigma():
return 5.670373E-5 #//Stefan-Boltzmann constant er... | 1,792 | 18.922222 | 76 | py |
ChromaStarPy | ChromaStarPy-master/Restart.py | # Teff 3750.0 logg 2.0 [Fe/H] 0.0 massStar 1.0 xiT 1.0 HeFe 0.0 CO 0.0 AlfFe 0.0 lineThresh -3.0 voigtThresh -3.0 lambda0 5.15e-05 lambda1 5.1899999999999994e-05 logGamCol 0.0 logKapFudge 0.0 macroV 1.0 rotV 1.0 rotI 90.0 RV 0.0 nInner 12 nOuter 12 ifMols 1 sampling fine
teffRS = 3750.0 # K
loggRS = 2.0 #log (cm/^2)
l... | 18,260 | 245.77027 | 1,126 | py |
ChromaStarPy | ChromaStarPy-master/Thetas.py | # -*- coding: utf-8 -*-
"""
Created on Thu Apr 27 17:28:47 2017
@author: Ian
"""
import math
def thetas():
#//int numThetas = 10; // guess
#//double[] cosTheta = new double[numThetas];
#// Try equal distribution in cos(theta) space (rather than Gaussian quadrature)
""" /*
double ii;
for (in... | 7,386 | 35.751244 | 97 | py |
ChromaStarPy | ChromaStarPy-master/alfbootest.py | # -*- coding: utf-8 -*-
"""
Created on Wed Aug 30 10:54:21 2017
@author: ishort
"""
#plotting:
import matplotlib
import matplotlib.pyplot as plt
#%matplotlib inline
import pylab
#General file for printing ad hoc quantities
#dbgHandle = open("debug.out", 'w')
#Get the data
dataPath = "AlfBooAtlas/"
#outPath = absPat... | 6,107 | 27.409302 | 106 | py |
ChromaStarPy | ChromaStarPy-master/CSGsRead2.py | # -*- coding: utf-8 -*-
"""
Created on Wed May 8 11:32:00 2019
@author: Phil Bennett
- ported to python and integrated with ChromaStarPy (CSPy) by Ian Short
"""
#FORTRAN unit 4 with data about species to include:
# No! import Fort4
#import Documents.ChromaStarPy.GAS.BlockData
import CSBlockData
import CSGasData... | 18,369 | 32.278986 | 173 | py |
ChromaStarPy | ChromaStarPy-master/KappasMetal.py | # -*- coding: utf-8 -*-
"""
Created on Tue Apr 25 14:48:00 2017
@author: ishort
"""
import math
import Useful
import PartitionFn
import ToolBox
#import numpy
#JB#
"""
#a function to create a cubic function fit extrapolation
def cubicFit(x,y):
coeffs = numpy.polyfit(x,y,3)
#returns an array of coef... | 42,559 | 37.62069 | 220 | py |
ChromaStarPy | ChromaStarPy-master/SunNaID.py | #
#
#Custom filename tags to distinguish from other runs
project = "Project"
runVers = "Run"
#Default plot
#Select ONE only:
#makePlot = "structure"
#makePlot = "sed"
makePlot = "spectrum"
#makePlot = "ldc"
#makePlot = "ft"
#makePlot = "tlaLine"
#Spectrum synthesis mode
# - uses model in Restart.py with minimal str... | 2,669 | 33.230769 | 116 | py |
ChromaStarPy | ChromaStarPy-master/MulGrayTCorr.py | # -*- coding: utf-8 -*-
"""
Created on Thu May 11 12:25:33 2017
@author: ishort
"""
import math
import Useful
import ToolBox
def mgTCorr(numDeps, teff, tauRos, temp, rho, kappa):
#// updated temperature structure
newTemp = [ [ 0.0 for i in range(numDeps) ] for j in range(2) ]
#//Teff boundary between ea... | 31,141 | 45.550075 | 212 | py |
ChromaStarPy | ChromaStarPy-master/SpecSyn.py | # -*- coding: utf-8 -*-
"""
Created on Fri Apr 28 17:03:30 2017
@author: ishort
"""
#/**
# *
# * Create master kappa_lambda(lambda) and tau_lambda(lambda) for
# * FormalSoln.formalSoln()
# *
# * @author Ian
# */
import math
import ToolBox
#plotting:
import matplotlib
import pylab
def masterLambda(numLams, numMaster... | 6,444 | 41.682119 | 151 | py |
ChromaStarPy | ChromaStarPy-master/LineKappa.py | # -*- coding: utf-8 -*-
"""
Created on Sat Apr 29 14:03:52 2017
@author: Ian
"""
"""// Assumes CRD, LTE, ???
// Input parameters:
// lam0 - line centre wavelength in nm
// logNl - log_10 column density of absorbers in lower E-level, l (cm^-2)
// logFlu - log_10 oscillator strength (unitless)
// chiL - energy of lower... | 7,712 | 41.379121 | 241 | py |
ChromaStarPy | ChromaStarPy-master/ChromaStarGasPy.py | # -*- coding: utf-8 -*-
"""
Spyder Editor
This is the main source file for ChromaStarPy. We start here.
"""
"""
/*
* The openStar project: stellar atmospheres and spectra
*
* ChromaStarPy
*
* Version 2020-05-15
* Use date based versioning with ISO 8601 date (YYYY-MM-DD)
*
* December 2017
*
* C. Ian Short... | 197,848 | 37.128541 | 245 | py |
ChromaStarPy | ChromaStarPy-master/PPressPlotMols.py | # -*- coding: utf-8 -*-
"""
Created on Wed Aug 30 10:54:21 2017
@author: ishort
"""
#plotting:
import matplotlib
import matplotlib.pyplot as plt
#%matplotlib inline
import pylab
from functools import reduce
import subprocess
import os
import sys
#General file for printing ad hoc quantities
#dbgHandle = open("debug.... | 6,942 | 31.143519 | 107 | py |
ChromaStarPy | ChromaStarPy-master/VegaHalpha.py | #
#
#Custom filename tags to distinguish from other runs
project = "Project"
runVers = "Run"
#Default plot
#Select ONE only:
#makePlot = "structure"
#makePlot = "sed"
makePlot = "spectrum"
#makePlot = "ldc"
#makePlot = "ft"
#makePlot = "tlaLine"
#Spectrum synthesis mode
# - uses model in Restart.py with minimal str... | 2,691 | 32.65 | 116 | py |
ChromaStarPy | ChromaStarPy-master/solartest.py | # -*- coding: utf-8 -*-
"""
Created on Wed Aug 30 10:54:21 2017
@author: ishort
"""
#plotting:
import matplotlib
import matplotlib.pyplot as plt
#%matplotlib inline
import pylab
#General file for printing ad hoc quantities
#dbgHandle = open("debug.out", 'w')
#Get the data
dataPath = "SolFluxAtlas2005/"
#outPath = a... | 6,253 | 28.780952 | 106 | py |
ChromaStarPy | ChromaStarPy-master/LineTau2.py | # -*- coding: utf-8 -*-
"""
Created on Sat Apr 29 15:33:20 2017
@author: Ian
"""
import math
import Useful
"""
/* This might be the wrong approach - using the *local* monochromatic continuum optical depth and extinction
* scale for reference at each wavelength - the alternative is to use a universal tau and kappa ... | 8,909 | 42.043478 | 172 | py |
ChromaStarPy | ChromaStarPy-master/Dgesl.py | # -*- coding: utf-8 -*-
"""
Created on Mon May 6 11:42:29 2019
@author:
"""
import math
import numpy
#from scipy.linalg.blas import daxpy
#from scipy.linalg.blas import ddot
#from scipy.linalg.blas import dscal
#from scipy.linalg.blas import idamax
#from Documents.ChromaStarPy.GAS.blas.Daxpy import daxpy
#from Docu... | 5,968 | 31.440217 | 112 | py |
ChromaStarPy | ChromaStarPy-master/CSBlockData.py | # -*- coding: utf-8 -*-
"""
Created on Thu May 9 12:04:33 2019
@author:
"""
#Try this
#global pi, sbcon, kbol, cvel, gcon, hpl, hmass, t0, everg #/consts/
global kbol, hmass, t0 #/consts/
global name, ip, comp, awt, nspec, natom, itab, ntab, indx, iprint, gsinit, print0 #/gasp/
global ipr, nch, nel, ntot, nat, zat,... | 10,838 | 35.867347 | 123 | py |
ChromaStarPy | ChromaStarPy-master/ScaleT5000.py | # -*- coding: utf-8 -*-
"""
Created on Fri Apr 21 16:39:41 2017
/**
* Initializes and re-scales a Phoenix LTE spherical reference model of
* Teff=5000K, log(g)=4.5, [Fe/H]=0.0, xi=1.0 km/s, l=1.0H_p, M=1M_Sun, R=6.4761D+10cm
*
* @author Ian
*/
@author: ishort
"""
import math
import ToolBox
import Useful
def ... | 16,606 | 46.99711 | 121 | py |
ChromaStarPy | ChromaStarPy-master/LDC.py | # -*- coding: utf-8 -*-
"""
Created on Mon May 1 12:58:43 2017
@author: ishort
"""
#JB#
import numpy as np
from sklearn.metrics import r2_score
#returns the "experimental" data
#takes a coefficent episilon(lambda) and a cosine value.
def func(coeff,ctheta):
return(1-coeff+coeff*ctheta)
#returns the mean^2... | 2,694 | 27.072917 | 100 | py |
ChromaStarPy | ChromaStarPy-master/ScaleT4250g20.py | # -*- coding: utf-8 -*-
"""
Created on Fri Apr 21 16:39:41 2017
/**
* Initializes and re-scales a Phoenix LTE spherical reference model of
* Teff=4250K, log(g)=2.0, [Fe/H]=0.0, xi=1.0 km/s, l=1.0H_p, M=1M_Sun, R=6.4761e+10cm
*
* @author Ian
*/
@author: ishort
"""
import math
import ToolBox
import Useful
def ... | 17,414 | 44.708661 | 122 | py |
ChromaStarPy | ChromaStarPy-master/ScaleSolar.py | # -*- coding: utf-8 -*-
"""
Created on Fri Apr 21 09:59:40 2017
Routines to read in a standard solar atmosphere model computed with Phoenix V15 and
calculate associated quantities. Needed for physical treatments normalized with
solar qantities
@author: ishort
"""
import math
import ToolBox
import Useful
def phxSun... | 17,041 | 51.76161 | 116 | py |
ChromaStarPy | ChromaStarPy-master/Daxpy.py | # -*- coding: utf-8 -*-
"""
Created on Fri May 17 15:38:28 2019
@author:
"""
import math
"""
*> \brief \b DAXPY
*
* =========== DOCUMENTATION ===========
*
* Online html documentation available at
* http://www.netlib.org/lapack/explore-html/
*
* Definition:
* ===========
*
* SUBROUTINE DAXPY(N,DA,... | 5,189 | 24.441176 | 90 | py |
ChromaStarPy | ChromaStarPy-master/Ddot.py | # -*- coding: utf-8 -*-
"""
Created on Fri May 17 17:11:14 2019
@author:
"""
import math
"""
*> \brief \b DDOT
*
* =========== DOCUMENTATION ===========
*
* Online html documentation available at
* http://www.netlib.org/lapack/explore-html/
*
* Definition:
* ===========
*
* DOUBLE PRECISION FUNCT... | 4,425 | 21.353535 | 77 | py |
ChromaStarPy | ChromaStarPy-master/ScaleT10000.py | # -*- coding: utf-8 -*-
"""
Created on Fri Apr 21 17:28:32 2017
Initializes and re-scales a Phoenix LTE spherical reference model of
* Teff=10000K, log(g)=4.0, [Fe/H]=0.0, xi=1.0 km/s, l=1.0H_p, M=1M_Sun, R=1.1613E+11cm
@author: ishort
"""
import math
import ToolBox
import Useful
def phxRefTeff():
return 1000... | 14,914 | 49.731293 | 121 | py |
ChromaStarPy | ChromaStarPy-master/CSGasData2.py |
import BlockData
global name, ip, comp, awt, nspec, natom, itab, ntab, indx, iprint, gsinit, print0 #/gasp/
global ipr, nch, nel, ntot, nat, zat, neut, idel, indsp, indzat, iat, natsp, iatsp #/gasp2/
ip = BlockData.ip
comp = BlockData.comp
awt = BlockData.awt
name = BlockData.name
ipr = BlockData.ipr
nch = BlockData... | 19,996 | 158.976 | 295 | py |
ChromaStarPy | ChromaStarPy-master/AtomicMass.py | # -*- coding: utf-8 -*-
"""
Created on Fri Apr 21 15:33:22 2017
//Atomic AND molecular masses in atomic mass units (amu. "mu")
@author: ishort
"""
def getMass(elName):
"""//Atomic masses in atomic mass units (amu. "mu")
//From CIAAW
//Atomic weights of the elements 2015 ciaaw.org/atomic-weights.htm, Aug. 2... | 3,547 | 16.564356 | 77 | py |
ChromaStarPy | ChromaStarPy-master/LamGrid.py | # -*- coding: utf-8 -*-
"""
Created on Thu Apr 20 16:33:44 2017
Create the wavelength grid that samples the overall spectral energy distribution
@author: ishort
"""
import math
def lamgrid(numLams, lamSetup):
lambdaScale = []
logLambda = 0.0
#// Space lambdas logarithmically:
logLam1 = mat... | 631 | 20.066667 | 80 | py |
ChromaStarPy | ChromaStarPy-master/GsCalc.py | # -*- coding: utf-8 -*-
"""
Created on Thu May 9 10:09:02 2019
@author:
"""
#
#
#his module can serve as the main method
#
#
#plotting:
import matplotlib
import matplotlib.pyplot as plt
#%matplotlib inline
import math
import numpy
#from scipy.linalg.blas import daxpy
#from scipy.linalg.blas import ddot
#from scipy... | 10,658 | 22.426374 | 118 | py |
ChromaStarPy | ChromaStarPy-master/KappasRaylGas.py | # -*- coding: utf-8 -*-
"""
Created on Tue Apr 25 17:18:39 2017
@author: ishort
"""
import math
import Useful
import PartitionFn
import ToolBox
#import numpy
#/* Rayleigh scattering opacity routines taken from Moog (moogjul2014/, MOOGJUL2014.tar)
#Chris Sneden (Universtiy of Texas at Austin) and collaborators
#http:/... | 10,089 | 33.087838 | 149 | py |
ChromaStarPy | ChromaStarPy-master/AlfBooTiO516.py | #
#
#Custom filename tags to distinguish from other runs
project = "Project"
runVers = "Run"
#Default plot
#Select ONE only:
#makePlot = "structure"
#makePlot = "sed"
makePlot = "spectrum"
#makePlot = "ldc"
#makePlot = "ft"
#makePlot = "tlaLine"
#Spectrum synthesis mode
# - uses model in Restart.py with minimal str... | 2,864 | 34.37037 | 132 | py |
ChromaStarPy | ChromaStarPy-master/GsCalcMaster.py | # -*- coding: utf-8 -*-
"""
Created on Thu May 9 10:09:02 2019
@author:
"""
#
#
#his module can serve as the main method
#
#
#plotting:
import matplotlib
import matplotlib.pyplot as plt
#%matplotlib inline
import math
import numpy
#from scipy.linalg.blas import daxpy
#from scipy.linalg.blas import ddot
#from scipy... | 8,875 | 24.287749 | 118 | py |
ChromaStarPy | ChromaStarPy-master/DepthScale.py | # -*- coding: utf-8 -*-
"""
Created on Wed Apr 26 16:10:24 2017
@author: ishort
"""
import math
def depthScale(numDeps, tauRos, kappa, rho):
""" /**
* Returns vector of numDep linear geometric DEPTHS below top of atmosphere - in
* cm (cgs) for consistency with log(g) units
*
*/"""
logE = math.log10... | 2,903 | 34.851852 | 184 | py |
ChromaStarPy | ChromaStarPy-master/SunCaIIHK.py | #
#
#Custom filename tags to distinguish from other runs
project = "Project"
runVers = "Run"
#Default plot
#Select ONE only:
#makePlot = "structure"
#makePlot = "sed"
makePlot = "spectrum"
#makePlot = "ldc"
#makePlot = "ft"
#makePlot = "tlaLine"
#Spectrum synthesis mode
# - uses model in Restart.py with minimal str... | 2,669 | 33.230769 | 116 | py |
ChromaStarPy | ChromaStarPy-master/Planck.py | # -*- coding: utf-8 -*-
"""
Spyder Editor
This is a temporary script file.
"""
import math
import Useful
def planck(temp, lambda2):
""" /**
* Inputs: lambda: a single scalar wavelength in cm temp: a single scalar
* temperature in K Returns log of Plank function in logBBlam - B_lambda
* distribution in pu... | 4,329 | 35.694915 | 104 | py |
ChromaStarPy | ChromaStarPy-master/RGBNaID.py | #
#
#Custom filename tags to distinguish from other runs
project = "Project"
runVers = "Run"
#Default plot
#Select ONE only:
#makePlot = "structure"
#makePlot = "sed"
makePlot = "spectrum"
#makePlot = "ldc"
#makePlot = "ft"
#makePlot = "tlaLine"
#Spectrum synthesis mode
# - uses model in Restart.py with minimal str... | 2,669 | 32.797468 | 116 | py |
ChromaStarPy | ChromaStarPy-master/Convec.py | # -*- coding: utf-8 -*-
"""
Created on Thu May 11 14:40:19 2017
@author: ishort
"""
import math
import Useful
def convec(numDeps, tauRos, depths, temp, press, rho, kappa, kappaSun,
zScale, teff, logg, mmw):
logE = math.log10(math.E) #// for debug output
ln10 = math.log(10.0) #//needed to convert... | 10,216 | 44.008811 | 222 | py |
ChromaStarPy | ChromaStarPy-master/PPressPlot.py | # -*- coding: utf-8 -*-
"""
Created on Wed Aug 30 10:54:21 2017
@author: ishort
"""
#plotting:
import matplotlib
import matplotlib.pyplot as plt
#%matplotlib inline
import pylab
from functools import reduce
import subprocess
import os
import sys
#General file for printing ad hoc quantities
#dbgHandle = open("debug.... | 6,870 | 30.810185 | 107 | py |
ChromaStarPy | ChromaStarPy-master/IonizationEnergy.py | # -*- coding: utf-8 -*-
"""
Created on Mon Apr 24 17:12:02 2017
@author: ishort
"""
def getIonE(species):
"""// Ground state ionization energies in eV
//From NIST Atomic Spectra Database
//Ionization Energies Data """
#//Kramida, A., Ralchenko, Yu., Reader, J., and NIST ASD Team (2014). NIST Atomic Spectra Dat... | 14,900 | 16.953012 | 246 | py |
ChromaStarPy | ChromaStarPy-master/Dscal.py | # -*- coding: utf-8 -*-
"""
Created on Fri May 17 16:20:21 2019
@author:
"""
import math
"""
*> \brief \b DSCAL
*
* =========== DOCUMENTATION ===========
*
* Online html documentation available at
* http://www.netlib.org/lapack/explore-html/
*
* Definition:
* ===========
*
* SUBROUTINE DSCAL(N,D... | 4,433 | 22.967568 | 80 | py |
ChromaStarPy | ChromaStarPy-master/LineListPy.py | # -*- coding: utf-8 -*-
"""
Created on Mon May 1 16:07:45 2017
@author: ishort
/*
* The MIT License (MIT)
*
* Copyright (c) 2016 C. Ian Short
*
* Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Sof... | 23,868 | 37.685575 | 463 | py |
ChromaStarPy | ChromaStarPy-master/Idamax.py | # -*- coding: utf-8 -*-
"""
Created on Fri May 17 16:41:34 2019
@author:
"""
import math
"""
*> \brief \b IDAMAX
*
* =========== DOCUMENTATION ===========
*
* Online html documentation available at
* http://www.netlib.org/lapack/explore-html/
*
* Definition:
* ===========
*
* INTEGER FUNCTION ID... | 3,993 | 22.356725 | 80 | py |
ChromaStarPy | ChromaStarPy-master/MStarSpecTest.py | # -*- coding: utf-8 -*-
"""
Created on Wed Aug 30 10:54:21 2017
@author: ishort
Compare arbitrary phoenix spectra to CSGPy spectra
- mainly to "astrophyscially tune" molecular band oscillator strenths
"""
#plotting:
import matplotlib
import matplotlib.pyplot as plt
#%matplotlib inline
import pylab
#From: https://... | 7,356 | 26.973384 | 106 | py |
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