repo stringlengths 2 99 | file stringlengths 13 225 | code stringlengths 0 18.3M | file_length int64 0 18.3M | avg_line_length float64 0 1.36M | max_line_length int64 0 4.26M | extension_type stringclasses 1
value |
|---|---|---|---|---|---|---|
reinforced-genetic-algorithm | reinforced-genetic-algorithm-main/autogrow/docking/ranking/selecting/rank_selection.py | """
This script is use to select molecules using a ranked selector
"""
import __future__
import os
import random
def run_rank_selector(usable_list_of_smiles, number_to_chose,
column_idx_to_select, reverse_sort=False):
"""
Given a data set and an idx number to select based on it will sel... | 3,380 | 31.509615 | 91 | py |
reinforced-genetic-algorithm | reinforced-genetic-algorithm-main/autogrow/docking/ranking/selecting/tournament_selection.py | """
This script is use to select molecules using a tournament selector
"""
import __future__
import random
import math
import copy
def run_Tournament_Selector(list_of_ligands, num_to_chose, tourn_size,
idx_to_sel, favor_most_negative=True):
"""
This runs a tournament style selecto... | 5,417 | 39.133333 | 85 | py |
reinforced-genetic-algorithm | reinforced-genetic-algorithm-main/autogrow/docking/ranking/selecting/__init__.py | 1 | 0 | 0 | py | |
reinforced-genetic-algorithm | reinforced-genetic-algorithm-main/docker/autogrow_in_docker.py | #!/usr/bin/env python
"""
This script will handle running AutoGrow4 in a docker container.
It handles generating the docker image and container, handling the user variables,
executing AutoGrow4, and copying the files from the container to the desired directory.
This script requires a JSON file that contains all the pa... | 26,775 | 37.805797 | 117 | py |
reinforced-genetic-algorithm | reinforced-genetic-algorithm-main/tutorial/__init__.py | 0 | 0 | 0 | py | |
transformers | transformers-main/conftest.py | # Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | 3,232 | 36.16092 | 113 | py |
transformers | transformers-main/setup.py | # Copyright 2021 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | 15,948 | 33.447084 | 157 | py |
transformers | transformers-main/hubconf.py | # Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicabl... | 8,496 | 51.450617 | 189 | py |
transformers | transformers-main/examples/run_on_remote.py | #!/usr/bin/env python
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LI... | 3,649 | 49.694444 | 125 | py |
transformers | transformers-main/examples/research_projects/longform-qa/eli5_app.py | import datasets
import faiss
import numpy as np
import streamlit as st
import torch
from elasticsearch import Elasticsearch
from eli5_utils import (
embed_questions_for_retrieval,
make_qa_s2s_model,
qa_s2s_generate,
query_es_index,
query_qa_dense_index,
)
import transformers
from transformers impor... | 13,474 | 37.28125 | 159 | py |
transformers | transformers-main/examples/research_projects/longform-qa/eli5_utils.py | import functools
import math
import os # noqa: F401
from random import choice, randint
from time import time
import datasets # noqa: F401
import faiss # noqa: F401
import numpy as np
import pandas as pd
import torch
import torch.utils.checkpoint as checkpoint
from elasticsearch import Elasticsearch # noqa: F401
fr... | 28,240 | 39.988389 | 119 | py |
transformers | transformers-main/examples/research_projects/codeparrot/examples/train_complexity_predictor.py | import argparse
from copy import deepcopy
import numpy as np
from datasets import ClassLabel, DatasetDict, load_dataset
from evaluate import load
from transformers import (
AutoModelForSequenceClassification,
AutoTokenizer,
DataCollatorWithPadding,
Trainer,
TrainerCallback,
TrainingArguments,
... | 4,390 | 32.015038 | 103 | py |
transformers | transformers-main/examples/research_projects/codeparrot/scripts/preprocessing.py | import gzip
import hashlib
import json
import multiprocessing
import os
import re
import shutil
import time
from pathlib import Path
import numpy as np
from arguments import PreprocessingArguments
from datasets import load_dataset
from minhash_deduplication import deduplicate_dataset
from transformers import AutoToke... | 7,394 | 33.236111 | 118 | py |
transformers | transformers-main/examples/research_projects/codeparrot/scripts/arguments.py | from dataclasses import dataclass, field
from typing import Optional
@dataclass
class TrainingArguments:
"""
Configuration for training model.
"""
model_ckpt: Optional[str] = field(
default="codeparrot/codeparrot", metadata={"help": "Model name or path of model to be trained."}
)
save... | 10,203 | 45.171946 | 119 | py |
transformers | transformers-main/examples/research_projects/codeparrot/scripts/codeparrot_training.py | import logging
import os
import time
from argparse import Namespace
from pathlib import Path
import datasets
import torch
from accelerate import Accelerator, DistributedType
from accelerate.utils import ProjectConfiguration
from arguments import TrainingArguments
from datasets import load_dataset
from huggingface_hub ... | 12,979 | 38.452888 | 116 | py |
transformers | transformers-main/examples/research_projects/codeparrot/scripts/initialize_model.py | from arguments import InitializationArguments
from transformers import AutoConfig, AutoModelForCausalLM, AutoTokenizer, HfArgumentParser
# Configuration
parser = HfArgumentParser(InitializationArguments)
args = parser.parse_args()
# Load codeparrot tokenizer trained for Python code tokenization
tokenizer = AutoToke... | 893 | 30.928571 | 94 | py |
transformers | transformers-main/examples/research_projects/codeparrot/scripts/validation_loss.py | import logging
import torch
from accelerate import Accelerator
from arguments import EvaluationArguments
from datasets import load_dataset
from torch.utils.data import IterableDataset
from torch.utils.data.dataloader import DataLoader
from transformers import AutoModelForCausalLM, AutoTokenizer, HfArgumentParser, set... | 3,496 | 33.97 | 114 | py |
transformers | transformers-main/examples/research_projects/codeparrot/scripts/minhash_deduplication.py | import json
import multiprocessing as mp
import re
from collections import defaultdict
from functools import partial
from typing import Dict, List, Optional, Set, Tuple, Type
from datasets import Dataset
from datasketch import MinHash, MinHashLSH
from dpu_utils.utils.iterators import ThreadedIterator
from tqdm import ... | 10,887 | 39.475836 | 127 | py |
transformers | transformers-main/examples/research_projects/codeparrot/scripts/pretokenizing.py | import multiprocessing
import time
from arguments import PretokenizationArguments
from datasets import load_dataset
from transformers import AutoTokenizer, HfArgumentParser
def tokenize(example):
output = {}
output["input_ids"] = tokenizer(example["content"], truncation=False)["input_ids"]
output["ratio... | 1,267 | 24.36 | 86 | py |
transformers | transformers-main/examples/research_projects/codeparrot/scripts/human_eval.py | import json
import multiprocessing
import os
import re
from collections import defaultdict
import torch
from accelerate import Accelerator
from accelerate.utils import set_seed
from arguments import HumanEvalArguments
from datasets import load_dataset, load_metric
from torch.utils.data import IterableDataset
from torc... | 9,004 | 38.323144 | 118 | py |
transformers | transformers-main/examples/research_projects/codeparrot/scripts/bpe_training.py | from arguments import TokenizerTrainingArguments
from datasets import load_dataset
from tqdm import tqdm
from transformers import AutoTokenizer, HfArgumentParser
from transformers.models.gpt2.tokenization_gpt2 import bytes_to_unicode
# Iterator for Training
def batch_iterator(batch_size=10):
for _ in tqdm(range(... | 1,015 | 29.787879 | 80 | py |
transformers | transformers-main/examples/research_projects/codeparrot/scripts/tests/test_deduplicate.py | from unittest import TestCase
from datasets import Dataset
from minhash_deduplication import deduplicate_dataset, make_duplicate_clusters
def get_dataset():
data_dict = {
"repo_name": ["test_repo1", "test_repo2", "test_repo3"],
"path": ["test_1.py", "test_2.py", "unit_test.py"],
"content"... | 1,004 | 32.5 | 78 | py |
transformers | transformers-main/examples/research_projects/codeparrot/scripts/tests/__init__.py | 0 | 0 | 0 | py | |
transformers | transformers-main/examples/research_projects/self-training-text-classification/selftraining.py | # coding=utf-8
# Copyright 2022 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... | 16,963 | 42.609254 | 119 | py |
transformers | transformers-main/examples/research_projects/self-training-text-classification/finetuning.py | # coding=utf-8
# Copyright 2022 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... | 34,604 | 41.616995 | 119 | py |
transformers | transformers-main/examples/research_projects/bertology/run_prune_gpt.py | #!/usr/bin/env python3
""" This script is adapted from the Bertology pruning code (https://github.com/huggingface/transformers/blob/783d7d2629e97c5f0c5f9ef01b8c66410275c204/examples/research_projects/bertology/run_bertology.py)
to prune GPT-like models. The author is @altsoph.
"""
import argparse
import logging
import... | 15,491 | 38.520408 | 204 | py |
transformers | transformers-main/examples/research_projects/bertology/run_bertology.py | #!/usr/bin/env python3
# Copyright 2018 CMU and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requir... | 18,594 | 40.048565 | 118 | py |
transformers | transformers-main/examples/research_projects/rag/use_own_knowledge_dataset.py | import logging
import os
from dataclasses import dataclass, field
from functools import partial
from pathlib import Path
from tempfile import TemporaryDirectory
from typing import List, Optional
import faiss
import torch
from datasets import Features, Sequence, Value, load_dataset
from transformers import (
DPRCo... | 8,256 | 38.507177 | 144 | py |
transformers | transformers-main/examples/research_projects/rag/consolidate_rag_checkpoint.py | """
A script creating a RAG checkpoint from a generator and a question encoder checkpoints.
"""
import argparse
from pathlib import Path
from transformers import AutoConfig, AutoTokenizer, RagConfig, RagSequenceForGeneration, RagTokenForGeneration
def consolidate(
model_type,
generator_name_or_path: str,
... | 3,678 | 35.068627 | 118 | py |
transformers | transformers-main/examples/research_projects/rag/utils_rag.py | import itertools
import json
import linecache
import os
import pickle
import re
import socket
import string
from collections import Counter
from logging import getLogger
from pathlib import Path
from typing import Callable, Dict, Iterable, List
import git
import torch
from torch.utils.data import Dataset
from transfo... | 8,107 | 32.093878 | 118 | py |
transformers | transformers-main/examples/research_projects/rag/finetune_rag.py | """Finetuning script for RAG models. Adapted from examples.seq2seq.finetune.py"""
import argparse
import logging
import os
import sys
import time
from collections import defaultdict
from pathlib import Path
from typing import Any, Dict, List, Tuple
import numpy as np
import pytorch_lightning as pl
import torch
import... | 26,194 | 39.3 | 119 | py |
transformers | transformers-main/examples/research_projects/rag/distributed_pytorch_retriever.py | import logging
import os
from typing import List, Tuple
import numpy as np
import psutil
import torch
import torch.distributed as dist
from transformers import RagRetriever
logger = logging.getLogger(__name__)
class RagPyTorchDistributedRetriever(RagRetriever):
"""
A distributed retriever built on top of ... | 6,539 | 46.05036 | 155 | py |
transformers | transformers-main/examples/research_projects/rag/test_distributed_retriever.py | import json
import os
import shutil
import sys
import tempfile
import unittest
from unittest import TestCase
from unittest.mock import patch
import faiss
import numpy as np
from datasets import Dataset
from transformers import BartConfig, BartTokenizer, DPRConfig, DPRQuestionEncoderTokenizer, RagConfig
from transform... | 13,794 | 39.693215 | 118 | py |
transformers | transformers-main/examples/research_projects/rag/eval_rag.py | """ Evaluation script for RAG models."""
import argparse
import ast
import logging
import os
import sys
import pandas as pd
import torch
from tqdm import tqdm
from transformers import BartForConditionalGeneration, RagRetriever, RagSequenceForGeneration, RagTokenForGeneration
from transformers import logging as trans... | 11,211 | 33.928349 | 119 | py |
transformers | transformers-main/examples/research_projects/rag/lightning_base.py | import argparse
import logging
import os
from pathlib import Path
from typing import Any, Dict
import pytorch_lightning as pl
from pytorch_lightning.utilities import rank_zero_info
from transformers import (
AdamW,
AutoConfig,
AutoModel,
AutoModelForPreTraining,
AutoModelForQuestionAnswering,
... | 15,639 | 37.617284 | 124 | py |
transformers | transformers-main/examples/research_projects/rag/callbacks_rag.py | import logging
from pathlib import Path
import numpy as np
import pytorch_lightning as pl
import torch
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
from pytorch_lightning.utilities import rank_zero_only
from utils_rag import save_json
def count_trainable_parameters(model):
model_paramet... | 4,442 | 36.974359 | 116 | py |
transformers | transformers-main/examples/research_projects/rag/parse_dpr_relevance_data.py | """
This script reads DPR retriever training data and parses each datapoint. We save a line per datapoint.
Each line consists of the query followed by a tab-separated list of Wikipedia page titles constituting
positive contexts for a given query.
"""
import argparse
import json
from tqdm import tqdm
def main():
... | 1,353 | 27.208333 | 102 | py |
transformers | transformers-main/examples/research_projects/rag/_test_finetune_rag.py | import json
import logging
import os
import sys
from pathlib import Path
import finetune_rag
from transformers.file_utils import is_apex_available
from transformers.testing_utils import (
TestCasePlus,
execute_subprocess_async,
require_ray,
require_torch_gpu,
require_torch_multi_gpu,
)
logging.b... | 3,954 | 34.3125 | 85 | py |
transformers | transformers-main/examples/research_projects/rag/__init__.py | import os
import sys
sys.path.insert(1, os.path.dirname(os.path.realpath(__file__)))
| 87 | 13.666667 | 63 | py |
transformers | transformers-main/examples/research_projects/rag/distributed_ray_retriever.py | import logging
import random
import ray
from transformers import RagConfig, RagRetriever, RagTokenizer
from transformers.models.rag.retrieval_rag import CustomHFIndex
logger = logging.getLogger(__name__)
class RayRetriever:
def __init__(self):
self.initialized = False
def create_rag_retriever(sel... | 7,186 | 45.973856 | 132 | py |
transformers | transformers-main/examples/research_projects/pplm/run_pplm.py | #! /usr/bin/env python3
# coding=utf-8
# Copyright (c) 2019 Uber Technologies, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless ... | 29,007 | 34.203883 | 182 | py |
transformers | transformers-main/examples/research_projects/pplm/run_pplm_discrim_train.py | #! /usr/bin/env python3
# coding=utf-8
# Copyright (c) 2019 Uber Technologies, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless ... | 18,797 | 34.874046 | 117 | py |
transformers | transformers-main/examples/research_projects/pplm/pplm_classification_head.py | from torch import nn
class ClassificationHead(nn.Module):
"""Classification Head for transformer encoders"""
def __init__(self, class_size, embed_size):
super().__init__()
self.class_size = class_size
self.embed_size = embed_size
# self.mlp1 = nn.Linear(embed_size, embed_size... | 651 | 31.6 | 68 | py |
transformers | transformers-main/examples/research_projects/deebert/test_glue_deebert.py | import argparse
import logging
import sys
from unittest.mock import patch
import run_glue_deebert
from transformers.testing_utils import TestCasePlus, get_gpu_count, require_torch_non_multi_gpu, slow
logging.basicConfig(level=logging.DEBUG)
logger = logging.getLogger()
def get_setup_file():
parser = argparse... | 3,690 | 34.152381 | 109 | py |
transformers | transformers-main/examples/research_projects/deebert/run_glue_deebert.py | from __future__ import absolute_import, division, print_function
import argparse
import glob
import logging
import os
import random
import time
import numpy as np
import torch
from torch import nn
from torch.utils.data import DataLoader, RandomSampler, SequentialSampler, TensorDataset
from torch.utils.data.distribute... | 31,739 | 42.125 | 150 | py |
transformers | transformers-main/examples/research_projects/deebert/src/modeling_highway_bert.py | import torch
from torch import nn
from torch.nn import CrossEntropyLoss, MSELoss
from transformers.file_utils import add_start_docstrings, add_start_docstrings_to_model_forward
from transformers.models.bert.modeling_bert import (
BERT_INPUTS_DOCSTRING,
BERT_START_DOCSTRING,
BertEmbeddings,
BertLayer,
... | 17,702 | 43.2575 | 172 | py |
transformers | transformers-main/examples/research_projects/deebert/src/__init__.py | 0 | 0 | 0 | py | |
transformers | transformers-main/examples/research_projects/deebert/src/modeling_highway_roberta.py | from __future__ import absolute_import, division, print_function, unicode_literals
from torch import nn
from torch.nn import CrossEntropyLoss, MSELoss
from transformers import RobertaConfig
from transformers.file_utils import add_start_docstrings, add_start_docstrings_to_model_forward
from transformers.models.roberta... | 6,789 | 42.806452 | 172 | py |
transformers | transformers-main/examples/research_projects/layoutlmv3/run_funsd_cord.py | #!/usr/bin/env python
# coding=utf-8
# Copyright 2022 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-... | 21,185 | 38.674157 | 118 | py |
transformers | transformers-main/examples/research_projects/lxmert/modeling_frcnn.py | """
coding=utf-8
Copyright 2018, Antonio Mendoza Hao Tan, Mohit Bansal
Adapted From Facebook Inc, Detectron2 && Huggingface Co.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www... | 73,740 | 37.366805 | 152 | py |
transformers | transformers-main/examples/research_projects/lxmert/extracting_data.py | import getopt
import json
import os
# import numpy as np
import sys
from collections import OrderedDict
import datasets
import numpy as np
import torch
from modeling_frcnn import GeneralizedRCNN
from processing_image import Preprocess
from utils import Config
"""
USAGE:
``python extracting_data.py -i <img_dir> -o ... | 5,244 | 33.966667 | 109 | py |
transformers | transformers-main/examples/research_projects/lxmert/utils.py | """
coding=utf-8
Copyright 2018, Antonio Mendoza Hao Tan, Mohit Bansal, Huggingface team :)
Adapted From Facebook Inc, Detectron2
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://w... | 18,206 | 31.805405 | 122 | py |
transformers | transformers-main/examples/research_projects/lxmert/visualizing_image.py | """
coding=utf-8
Copyright 2018, Antonio Mendoza Hao Tan, Mohit Bansal
Adapted From Facebook Inc, Detectron2
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/license... | 13,420 | 25.842 | 100 | py |
transformers | transformers-main/examples/research_projects/lxmert/processing_image.py | """
coding=utf-8
Copyright 2018, Antonio Mendoza Hao Tan, Mohit Bansal
Adapted From Facebook Inc, Detectron2
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/license... | 5,747 | 37.066225 | 114 | py |
transformers | transformers-main/examples/research_projects/vqgan-clip/loaders.py | import importlib
import torch
import yaml
from omegaconf import OmegaConf
from taming.models.vqgan import VQModel
def load_config(config_path, display=False):
config = OmegaConf.load(config_path)
if display:
print(yaml.dump(OmegaConf.to_container(config)))
return config
def load_vqgan(device, c... | 2,230 | 28.746667 | 108 | py |
transformers | transformers-main/examples/research_projects/vqgan-clip/VQGAN_CLIP.py | import os
from glob import glob
import imageio
import torch
import torchvision
import wandb
from img_processing import custom_to_pil, loop_post_process, preprocess, preprocess_vqgan
from loaders import load_vqgan
from PIL import Image
from torch import nn
from transformers import CLIPModel, CLIPTokenizerFast
from uti... | 11,225 | 40.732342 | 136 | py |
transformers | transformers-main/examples/research_projects/vqgan-clip/img_processing.py | import numpy as np
import PIL
import torch
import torchvision.transforms as T
import torchvision.transforms.functional as TF
from PIL import Image
def preprocess(img, target_image_size=256):
s = min(img.size)
if s < target_image_size:
raise ValueError(f"min dim for image {s} < {target_image_size}")
... | 1,194 | 22.431373 | 72 | py |
transformers | transformers-main/examples/research_projects/vqgan-clip/utils.py | from datetime import datetime
import matplotlib.pyplot as plt
import torch
def freeze_module(module):
for param in module.parameters():
param.requires_grad = False
def get_device():
device = "cuda" if torch.cuda.is_available() else "cpu"
if torch.backends.mps.is_available() and torch.backends.m... | 969 | 25.944444 | 117 | py |
transformers | transformers-main/examples/research_projects/bertabs/modeling_bertabs.py | # MIT License
# Copyright (c) 2019 Yang Liu and the HuggingFace team
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, c... | 38,255 | 35.124646 | 114 | py |
transformers | transformers-main/examples/research_projects/bertabs/configuration_bertabs.py | # coding=utf-8
# Copyright 2019 The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.a... | 3,261 | 32.285714 | 147 | py |
transformers | transformers-main/examples/research_projects/bertabs/convert_bertabs_original_pytorch_checkpoint.py | # coding=utf-8
# Copyright 2018 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | 6,523 | 34.075269 | 117 | py |
transformers | transformers-main/examples/research_projects/bertabs/utils_summarization.py | import os
from collections import deque
import torch
from torch.utils.data import Dataset
# ------------
# Data loading
# ------------
class CNNDMDataset(Dataset):
"""Abstracts the dataset used to train seq2seq models.
The class will process the documents that are located in the specified
folder. The ... | 5,753 | 33.25 | 106 | py |
transformers | transformers-main/examples/research_projects/bertabs/test_utils_summarization.py | # coding=utf-8
# Copyright 2019 HuggingFace Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or ag... | 4,419 | 43.646465 | 99 | py |
transformers | transformers-main/examples/research_projects/bertabs/__init__.py | 0 | 0 | 0 | py | |
transformers | transformers-main/examples/research_projects/bertabs/run_summarization.py | #! /usr/bin/python3
import argparse
import logging
import os
import sys
from collections import namedtuple
import torch
from modeling_bertabs import BertAbs, build_predictor
from torch.utils.data import DataLoader, SequentialSampler
from tqdm import tqdm
from transformers import BertTokenizer
from .utils_summarizati... | 10,202 | 28.318966 | 115 | py |
transformers | transformers-main/examples/research_projects/fsner/setup.py | import setuptools
with open("README.md", "r", encoding="utf-8") as fh:
long_description = fh.read()
setuptools.setup(
name="fsner",
version="0.0.1",
author="msi sayef",
author_email="[email protected]",
description="Few-shot Named Entity Recognition",
long_description=long_description,
... | 864 | 29.892857 | 97 | py |
transformers | transformers-main/examples/research_projects/fsner/src/fsner/tokenizer_utils.py | import torch
from transformers import AutoTokenizer
class FSNERTokenizerUtils(object):
def __init__(self, pretrained_model_name_or_path):
self.tokenizer = AutoTokenizer.from_pretrained(pretrained_model_name_or_path)
def tokenize(self, x):
"""
Wrapper function for tokenizing query and... | 3,989 | 37.737864 | 182 | py |
transformers | transformers-main/examples/research_projects/fsner/src/fsner/model.py | import torch
from transformers import AutoModel
class FSNERModel(torch.nn.Module):
"""
The FSNER model implements a few-shot named entity recognition method from the paper `Example-Based Named Entity Recognition <https://arxiv.org/abs/2008.10570>`__ by
Morteza Ziyadi, Yuting Sun, Abhishek Goswami, Jade H... | 3,100 | 37.283951 | 169 | py |
transformers | transformers-main/examples/research_projects/fsner/src/fsner/__init__.py | from .model import FSNERModel
from .tokenizer_utils import FSNERTokenizerUtils
__all__ = ["FSNERModel", "FSNERTokenizerUtils"]
| 129 | 20.666667 | 48 | py |
transformers | transformers-main/examples/research_projects/adversarial/run_hans.py | # coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a cop... | 8,264 | 33.012346 | 117 | py |
transformers | transformers-main/examples/research_projects/adversarial/utils_hans.py | # coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a cop... | 11,760 | 33.591176 | 118 | py |
transformers | transformers-main/examples/research_projects/robust-speech-event/run_speech_recognition_ctc_streaming.py | #!/usr/bin/env python
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LI... | 28,211 | 40.488235 | 145 | py |
transformers | transformers-main/examples/research_projects/robust-speech-event/run_speech_recognition_ctc_bnb.py | #!/usr/bin/env python
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LI... | 31,562 | 39.413572 | 145 | py |
transformers | transformers-main/examples/research_projects/robust-speech-event/eval.py | #!/usr/bin/env python3
import argparse
import re
from typing import Dict
import torch
from datasets import Audio, Dataset, load_dataset, load_metric
from transformers import AutoFeatureExtractor, pipeline
def log_results(result: Dataset, args: Dict[str, str]):
"""DO NOT CHANGE. This function computes and logs t... | 4,711 | 33.394161 | 147 | py |
transformers | transformers-main/examples/research_projects/performer/run_mlm_performer.py | # coding=utf-8
# Copyright 2020 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless require... | 28,738 | 40.530347 | 119 | py |
transformers | transformers-main/examples/research_projects/performer/modeling_flax_performer.py | # coding=utf-8
# Copyright 2018 The Google Flax Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
... | 21,121 | 37.264493 | 120 | py |
transformers | transformers-main/examples/research_projects/performer/modeling_flax_performer_utils.py | # coding=utf-8
# Copyright 2020 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... | 25,678 | 37.966616 | 119 | py |
transformers | transformers-main/examples/research_projects/information-gain-filtration/run_clm_igf.py | # Copyright 2022 - Intel Corp. All rights reserved.
# Authors: Mayank Kumar Raunak, Javier Turek, Nicole Beckage
"""
Implementation of a new method for fine-tuning transformer models that we call
Information Gain Filtration 'IGF' on WikiText data set and compared the results
with the standard fine-tuning method
Steps... | 15,491 | 33.735426 | 150 | py |
transformers | transformers-main/examples/research_projects/information-gain-filtration/igf/__init__.py | 0 | 0 | 0 | py | |
transformers | transformers-main/examples/research_projects/information-gain-filtration/igf/igf.py | # Copyright 2022 - Intel Corp. All rights reserved.
# Authors: Mayank Kumar Raunak, Javier Turek, Nicole Backage
import copy
import logging
import random
import joblib
import numpy as np
import torch
import torch.nn as nn
from torch.utils.data import DataLoader
from tqdm import tqdm
from transformers import AdamW, G... | 14,499 | 33.772182 | 117 | py |
transformers | transformers-main/examples/research_projects/rag-end2end-retriever/use_own_knowledge_dataset.py | import logging
import os
from dataclasses import dataclass, field
from functools import partial
from pathlib import Path
from tempfile import TemporaryDirectory
from typing import List, Optional
import faiss
import torch
from datasets import Features, Sequence, Value, load_dataset
from transformers import DPRContextE... | 6,991 | 38.727273 | 144 | py |
transformers | transformers-main/examples/research_projects/rag-end2end-retriever/utils_rag.py | import itertools
import json
import linecache
import os
import pickle
import re
import socket
import string
from collections import Counter
from logging import getLogger
from pathlib import Path
from typing import Callable, Dict, Iterable, List
import git
import torch
from torch.utils.data import Dataset
from transfo... | 8,107 | 32.093878 | 118 | py |
transformers | transformers-main/examples/research_projects/rag-end2end-retriever/finetune_rag.py | """Finetuning script for RAG models. Adapted from examples.seq2seq.finetune.py"""
import argparse
import copy
import json
import logging
import multiprocessing
import os
import random
import shutil
import sys
import time
from collections import defaultdict
from pathlib import Path
from typing import Any, Dict, List, T... | 33,679 | 40.27451 | 159 | py |
transformers | transformers-main/examples/research_projects/rag-end2end-retriever/eval_rag.py | """ Evaluation script for RAG models."""
import argparse
import ast
import logging
import os
import sys
import pandas as pd
import torch
from tqdm import tqdm
from transformers import BartForConditionalGeneration, RagRetriever, RagSequenceForGeneration, RagTokenForGeneration
from transformers import logging as trans... | 11,211 | 33.928349 | 119 | py |
transformers | transformers-main/examples/research_projects/rag-end2end-retriever/lightning_base.py | import argparse
import logging
import os
from pathlib import Path
from typing import Any, Dict
import pytorch_lightning as pl
from pytorch_lightning.utilities import rank_zero_info
from transformers import (
AdamW,
AutoConfig,
AutoModel,
AutoModelForPreTraining,
AutoModelForQuestionAnswering,
... | 16,089 | 37.771084 | 124 | py |
transformers | transformers-main/examples/research_projects/rag-end2end-retriever/callbacks_rag.py | import logging
from pathlib import Path
import numpy as np
import pytorch_lightning as pl
import torch
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
from pytorch_lightning.utilities import rank_zero_only
from utils_rag import save_json
def count_trainable_parameters(model):
model_paramet... | 4,473 | 36.283333 | 116 | py |
transformers | transformers-main/examples/research_projects/rag-end2end-retriever/kb_encode_utils.py | import os
from functools import partial
from glob import glob
import faiss
from datasets import Features, Sequence, Value, concatenate_datasets, load_dataset, load_from_disk
from transformers import DPRContextEncoder, DPRContextEncoderTokenizerFast
def split_text(text, n=100, character=" "):
"""Split the text e... | 3,178 | 38.246914 | 112 | py |
transformers | transformers-main/examples/research_projects/rag-end2end-retriever/distributed_ray_retriever.py | import logging
import random
import ray
from transformers import RagConfig, RagRetriever, RagTokenizer
from transformers.models.rag.retrieval_rag import CustomHFIndex
logger = logging.getLogger(__name__)
class RayRetriever:
def __init__(self):
self.initialized = False
def create_rag_retriever(sel... | 8,211 | 43.150538 | 132 | py |
transformers | transformers-main/examples/research_projects/movement-pruning/counts_parameters.py | # Copyright 2020-present, the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | 3,465 | 34.731959 | 117 | py |
transformers | transformers-main/examples/research_projects/movement-pruning/masked_run_glue.py | # coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a cop... | 40,722 | 41.243776 | 150 | py |
transformers | transformers-main/examples/research_projects/movement-pruning/bertarize.py | # Copyright 2020-present, the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | 5,156 | 36.642336 | 140 | py |
transformers | transformers-main/examples/research_projects/movement-pruning/masked_run_squad.py | # coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a cop... | 47,877 | 40.669278 | 126 | py |
transformers | transformers-main/examples/research_projects/movement-pruning/emmental/modeling_bert_masked.py | # coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a cop... | 47,115 | 45.056696 | 152 | py |
transformers | transformers-main/examples/research_projects/movement-pruning/emmental/__init__.py | from .configuration_bert_masked import MaskedBertConfig
from .modeling_bert_masked import (
MaskedBertForMultipleChoice,
MaskedBertForQuestionAnswering,
MaskedBertForSequenceClassification,
MaskedBertForTokenClassification,
MaskedBertModel,
)
from .modules import *
| 286 | 27.7 | 55 | py |
transformers | transformers-main/examples/research_projects/movement-pruning/emmental/configuration_bert_masked.py | # coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a cop... | 2,550 | 34.430556 | 116 | py |
transformers | transformers-main/examples/research_projects/movement-pruning/emmental/modules/masked_nn.py | # coding=utf-8
# Copyright 2020-present, the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by a... | 4,506 | 41.121495 | 105 | py |
transformers | transformers-main/examples/research_projects/movement-pruning/emmental/modules/binarizer.py | # coding=utf-8
# Copyright 2020-present, AllenAI Authors, University of Illinois Urbana-Champaign,
# Intel Nervana Systems and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the ... | 5,822 | 39.158621 | 175 | py |
transformers | transformers-main/examples/research_projects/movement-pruning/emmental/modules/__init__.py | from .binarizer import MagnitudeBinarizer, ThresholdBinarizer, TopKBinarizer
from .masked_nn import MaskedLinear
| 113 | 37 | 76 | py |
transformers | transformers-main/examples/research_projects/visual_bert/modeling_frcnn.py | """
coding=utf-8
Copyright 2018, Antonio Mendoza Hao Tan, Mohit Bansal
Adapted From Facebook Inc, Detectron2 && Huggingface Co.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www... | 73,740 | 37.366805 | 152 | py |
transformers | transformers-main/examples/research_projects/visual_bert/extracting_data.py | import getopt
import json
import os
# import numpy as np
import sys
from collections import OrderedDict
import datasets
import numpy as np
import torch
from modeling_frcnn import GeneralizedRCNN
from processing_image import Preprocess
from utils import Config
"""
USAGE:
``python extracting_data.py -i <img_dir> -o ... | 5,244 | 33.966667 | 109 | py |
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