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def errorString(node, error): """ Format error messages for node errors returned by checkLinkoStructure. inputs: node - the node for the error. error - a (backset, foreset) tuple, where backset is the set of missing backlinks and foreset is the set of missing forelinks. returns: string ...
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def deep_update(target, source): """ Deep merge two dicts """ if isinstance(source, dict): for key, item in source.items(): if key in target: target[key] = deep_update(target[key], item) else: target[key] = source[key] return target
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import hashlib def md5_hash_file(path): """ Return a md5 hashdigest for a file or None if path could not be read. """ hasher = hashlib.md5() try: with open(path, 'rb') as afile: buf = afile.read() hasher.update(buf) return hasher.hexdigest() except I...
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def Constant(value): """ Produce an object suitable for use as a source in the 'connect' function that evaluates to the given 'value' :param value: Constant value to provide to a connected target :return: Output instance port of an instance of a Block that produces the given constant when evaluated...
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def _Backward3a_T_Ps(P, s): """Backward equation for region 3a, T=f(P,s) Parameters ---------- P : float Pressure [MPa] s : float Specific entropy [kJ/kgK] Returns ------- T : float Temperature [K] References ---------- IAPWS, Revised Supplementary ...
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import re def expandvars(s): """Expand environment variables of form %var%. Unknown variables are left unchanged. """ global _env_rx if '%' not in s: return s if _env_rx is None: _env_rx = re.compile(r'%([^|<>=^%]+)%') return _env_rx.sub(_substenv, s)
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def make_map_counts(events, ref_geom, pointing, offset_max): """Build a WcsNDMap (space - energy) with events from an EventList. The energy of the events is used for the non-spatial axis. Parameters ---------- events : `~gammapy.data.EventList` Event list ref_geom : `~gammapy.maps.WcsG...
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def stats_aggregate(): """ RESTful CRUD Controller """ return crud_controller()
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def format_dB(num): """ Returns a human readable string of dB. The value is divided by 10 to get first decimal digit """ num /= 10 return f'{num:3.1f} {"dB"}'
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def _check_index_dtype(k): """ Check the dtype of the index. Parameters ---------- k: slice or array_like Index into an array Examples -------- >>> _check_index_dtype(0) dtype('int64') >>> _check_index_dtype(np.datetime64(0, 'ms')) dtype('<M8[ms]') >>> _check_in...
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def _wrapper_for_precessing_snr(args): """Wrapper function for _precessing_snr for a pool of workers Parameters ---------- args: tuple All args passed to _precessing_snr """ return _precessing_snr(*args)
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import logging def put_file_store(store_name, store, block_on_existing=None, user=None): # noqa: E501 """Create/update store # noqa: E501 :param store_name: Name of the store :type store_name: str :param store: Store information :type store: dict | bytes :rtype: FileStore """ ...
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from typing import Dict from typing import Set from typing import Tuple def assign_sections(region_table: RegionTable, sections: Dict[str, int]): """Assign memory sections. This is a packing problem and therefore reasonably complex. A simplistic algorithm is used here which may not always be optimal if u...
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def humanize_arrow_date( date ): """ Date is internal UTC ISO format string. Output should be "today", "yesterday", "in 5 days", etc. Arrow will try to humanize down to the minute, so we need to catch 'today' as a special case. """ try: then = arrow.get(date).to('local') now...
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def getCourseTeeHoles(request, courseId, courseTeeId): """ Getter function for list of courses and tees """ resultList = list(Tee.objects.filter(course_tee_id=courseTeeId).values('id', 'yardage', 'par', 'handicap', 'hole__id', 'hole__name', 'hole__number')) return JsonResponse({'data' : resultList})
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def create_zone_ajax(request): """ This view tries to create a new zone and returns an JSON with either 'success' = True or 'success' = False and some errors. """ qd = request.POST.copy() # See if the domain exists. # Fail if it already exists or if it's under a delegated domain. root_d...
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def main_plot(): """The view for rendering the scatter chart""" img = get_main_image() return send_file(img, mimetype='image/png', cache_timeout=0)
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def Ising2dT(beta = 0.4, h = 0, isSym = False): """ T = Ising2dT(J,h). ------------------------- Set up the initial tensor for 2d classical Ising model on a square lattice. Argument: J is defined to be beta * J = J / kT, and h is defined to be beta*h = h / kT, where J and h are conventional coup...
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def __grid_count(self): """Get number of grids in the case""" try: return self.__case_stub.GetGridCount(self.__request()).count except grpc.RpcError as exception: if exception.code() == grpc.StatusCode.NOT_FOUND: return 0 return 0
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import math def timer(method): """ Decorator to time a function. :param method: Method to time. :type method: function """ def wrapper(*args, **kwargs): """ Start clock, do function with args, print rounded elapsed time. """ starttime = compat.perf_clock() ...
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def plot_map_from_nc(path_nc, out_path, var_name, xaxis_min=0.0, xaxis_max=1.1, xaxis_step=0.1, annotate_date=False, yr=0, date=-1, xlabel='', title='', tme_name='time', show_plot=False, any_time_data=True, format='%.2f', land_bg=True, cmap=plt.cm.RdBu, grid=False, fill_mask=Fa...
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def f5_add_policy_method_command(client: Client, policy_md5: str, new_method_name: str, act_as_method: str) -> CommandResults: """ Add allowed method to a certain policy. Args: client (Client): f5 client. policy_md5 (str): MD5 hash of the policy. new...
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def test_set(sc, idfModel, numFeatures, test_file = "data/test_clean.csv" ): """ Input : IDF model obtained in the training phase number of retained features in the tweet-term structure Output : normalized twee...
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def is_object_based_ckpt(ckpt_path: str) -> bool: """Returns true if `ckpt_path` points to an object-based checkpoint.""" var_names = [var[0] for var in tf.train.list_variables(ckpt_path)] return '_CHECKPOINTABLE_OBJECT_GRAPH' in var_names
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from typing import Any def gather(first_step: str = PATH, *, filename: str = FILE, stamp: bool = True) -> dict[str, dict[str, Any]]: """Walk the steps on the path to read the trees of configuration.""" user = USER if filename == FILE else filename.split('.')[0] trees = [(where, tree) for where, tree in w...
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def _extractKernelVersion(kernel): """ Extract version string from raw kernel binary. @param bytes kernel Raw kernel binary. @return string Version string if found. """ try: versionOffset = kernel.index(b'Linux version') for i in range(versionOffset, versionOffset+1024): ...
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def get_vdw_rad(atomic_num): """Function to get the user defined atomic radius""" atomic_rad_dict = {6: 1.7, 7: 1.55, 8: 1.52, 9: 1.47} if atomic_num in atomic_rad_dict: return atomic_rad_dict[atomic_num] else: return float(Chem.GetPeriodicTable().GetRvdw(atomic_num))
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def input_literal(term, prompt): """Get console input of literal values and structures.""" while True: input_string = read_line(term, prompt) if input_string: break return eval_literal(input_string)
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from typing import List from typing import Union from typing import Mapping from typing import Pattern def _parse_string( value_expr: str, target_expr: str, ref_parts: List[str], a_type: Union[mapry.String, mapry.Path], pattern_uids: Mapping[Pattern[str], int], auto_id: mapry.go.genera...
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from datetime import datetime def get_dots_case_json(casedoc, anchor_date=None): """ Return JSON-ready array of the DOTS block for given patient. Pulling properties from PATIENT document. Patient document trumps casedoc in this use case. """ if anchor_date is None: anchor_date = datet...
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import time def sleeping_func(arg, secs=10, result_queue=None): """This methods illustrates how the workers can be used.""" time.sleep(secs) if result_queue is not None: result_queue.put(arg) else: return arg
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def make_coll(db_auth, db_user, db_pass, mongo_server_ip='127.0.0.1'): """ Function to establish a connection to a local MonoDB instance. Parameters ---------- coll_name: String. Name of MongoDB collection to retrieve. db_auth: String. MongoDB database that sh...
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def sms_send(recipient): """ Attempt to send SMS message using Twilio's API. If this fails, use the Summit API to send the SMS message. """ body = request.get_data() try: message = send_sms_through_provider('Twilio', recipient, body) except TwilioRestException: message = send...
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from typing import Dict from typing import Optional def cat_to_sub_cat( dp: Image, categories_dict_names_as_key: Dict[str, str], cat_to_sub_cat_dict: Optional[Dict[str, str]] = None ) -> Image: """ Replace some category with its affiliated sub category of CategoryAnnotations. Suppose your category name is...
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def index_to_str(idx): """ Generates a string representation from an index array. :param idx: The NumPy boolean index array. :return: The string representation of the array. """ num_chars = int(idx.shape[0] / 6 + 0.5) s = "" for i in range(num_chars): b = i * 6 six = idx...
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def ArclinkStatusLine_ClassName(): """ArclinkStatusLine_ClassName() -> char const *""" return _DataModel.ArclinkStatusLine_ClassName()
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import re def build_sfdisk_partition_line(table_type, dev_path, size, details): """Build sfdisk partition line using passed details, returns str.""" line = f'{dev_path} : size={size}' dest_type = '' source_filesystem = str(details.get('fstype', '')).upper() source_table_type = '' source_type = details.get...
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def get_allocation_window(allocation, default_start_date=_get_zero_date_utc(), default_end_date=_get_current_date_utc()): """ Returns a tuple containing the allocation windows start and end date """ if not allocation.start_date: window_start_da...
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def IDFromUID(s,code=''): """ Create an ID object from the given string UID. This can raise an Error in case the string does not map to a valid UID. code is used in the verification process if given. """ id = _EmptyClass() id.__class__ = ID id.set_uid(s,code) return id
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def ordered_pair_accuracy(labels, predictions, weights=None, name=None): """Computes the percentage of correctedly ordered pair. For any pair of examples, we compare their orders determined by `labels` and `predictions`. They are correctly ordered if the two orders are compatible. That is, labels l_i >...
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def samp(*args, **kwargs): """ The HTML <samp> element is an element intended to identify sample output from a computer program. It is usually displayed in the browser's default monotype font (such as Lucida Console). """ return el('samp', *args, **kwargs)
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def knownTypes(): """Returns all known resource types""" return loader.typeToExtension.keys()+['WorldModel','MultiPath','Point','Rotation','Matrix3','ContactPoint']
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def args_for_blocking_web_whatsapp_com_http(): """ Returns arguments for blocking web.whatsapp.com over http """ return ["-iptables-reset-keyword", "Host: web.whatsapp.com"]
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def zeta_vector(): """The :func:`zeta` vector. :func:`zeta_vector` returns :math:`\zeta` parameters calculated by formula (5) on page 17 in `the technical paper`_, which is .. math:: \\bf \zeta= W^{-1}(p-\mu) """ return np.linalg.inv(W_matrix()) @ (m_vector() - mu_vector())
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def get_fourier_col_name(k, col_name, function_name="sin", seas_name=None): """Returns column name corresponding to a particular fourier term, as returned by fourier_series_fcn :param k: int fourier term :param col_name: str column in the dataframe used to generate fourier series :param...
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import uuid def unique_filename(): """Creates a UUID-based unique filename""" return str(uuid.uuid1())
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import mdtraj import tempfile def _create_trajectory(molecule): """Create an `mdtraj` topology from a molecule object. Parameters ---------- molecule: openff.toolkit.topology.Molecule The SMILES pattern. Returns ------- mdtraj.Trajectory The created trajectory. """ ...
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def preprocess(image): """Load and preprocess image.""" # Create the array of the right shape to feed into the keras model data = [] size = (96, 96) image = ImageOps.fit(image, size, Image.ANTIALIAS) image = np.asarray(image) x = preprocess_input(image) data.append(x) data = np.array...
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import torch def move_to(obj, device): """Credit: https://discuss.pytorch.org/t/pytorch-tensor-to-device-for-a-list-of-dict/66283 Arguments: obj {dict, list} -- Object to be moved to device device {torch.device} -- Device that object will be moved to Raises: TypeError: object is ...
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def split(C, dims, axis=1): """ Splits the columns or rows of C. Suppse C = [X_1, X_2, ..., X_B] is an (n x sum_b d_b) matrix. Returns a list of the constituent matrices as a list. Parameters ---------- C: array-like, shape (n, sum_b d_b) The concatonated block matrix. dims: li...
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def build_binary_value(char_str, bits, alphabet) -> str: """ This method converts a string char_str into binary, using n bits per character and decoding from the supplied alphabet or from ASCII when bits=7 This is almost the inverse method to build_string in the decompress module. :param char_str:...
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def computeAnswer(inputData): """Compute the answer to the task, from the input data.""" # Do some calculations on the inputData answer = str(int(inputData) * 2) # EDIT ME (remove this line once done) return answer
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import re import itertools import collections def label_schema_matching( df, endpoint=DBpedia, uri_data_model=False, to_lowercase=True, remove_prefixes=True, remove_punctuation=True, prefix_threshold=1, progress=True, caching=True): """A schema matching method by checking for attribute -- rdfs:label betw...
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from datetime import datetime def get_last_month_date_dmy() -> str: """Returns last month date (dd/mm/yyyy for calls report).""" return (datetime.now() - timedelta(30)).date().strftime("%d/%m/%Y")
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def irange(start, end): """Inclusive range from start to end (vs. Python insanity.) irange(1,5) -> 1, 2, 3, 4, 5""" return range( start, end + 1 )
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def get_required_params(request, expected_params: list, type: str = 'POST') -> dict: """Gets the list of params from request, or returns None if ANY is missing. :param request: The Request :type request: flask.Request :param expected_params: The list of expected parameters :type expected_params: li...
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def bot_send(msg, bot_id, broadcast): """ Send a message to a telegram user or group specified on chat_id chat_id must be a number! bot_id == bot_username """ if broadcast == True: bot = telegram.Bot(token=config[bot_id]["bot_api_token"]) bot.sendMessage(chat_id=config[bot_id]...
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import random def split_dataset(dataset, num_train=1200): """ Split the dataset into a training and test set. Args: dataset: an iterable of Characters. Returns: A tuple (train, test) of Character sequences. """ all_data = list(dataset) random.shuffle(all_data) return all_da...
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def get_constant(): """ Keep learning rate constant """ def update(lr, epoch): return lr return update
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def spatial_pack_nhwc(data, kernel, stride, padding, in_bits, weight_bits, pack_dtype, out_dtype, dorefa=False): """ Compute convolution with pack on spatial axes. """ assert data.shape[0].value == 1, "spatial pack convolution only support batch size=1" data_q = bitpack(data, in_bits, ...
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import pickle def load_random_tt_distribution(numAgents, r, pu, samples): """ Load a file with a population of random turn-taking values, assuming that it exists Parameters: * numAgents -- the desired number of probabilistic agents to include * r -- the turn-taking resolution * pu -- the probability that a ...
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from typing import ContextManager def fail_after(seconds: float) -> ContextManager[CancelScope]: """ Create a cancel scope with the given timeout, and raises an error if it is actually cancelled. This function and move_on_after() are similar in that both create a cancel scope with a given timeout...
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from typing import Union from typing import Set from typing import Dict import copy def _get_dataset_names_mapping( names: Union[str, Set[str], Dict[str, str]] = None ) -> Dict[str, str]: """Take a name or a collection of dataset names and turn it into a mapping from the old dataset names to the provided ...
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import json def _json_keyify(args): """ converts arguments into a deterministic key used for memoizing """ args = tuple(sorted(args.items(), key=lambda e: e[0])) return json.dumps(args)
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def tgsegsm_vect(time_in, data_in): """ Transform data from GSE to GSM. Parameters ---------- time_in: list of float Time array. data_in: list of float xgse, ygse, zgse cartesian GSE coordinates. Returns ------- xgsm: list of float Cartesian GSM coordinates...
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def choose_a_pick_naive(numbers_left): """ Choose any larger number :param numbers_left: :return: """ if numbers_left[0] > numbers_left[-1]: return 0, numbers_left[0] elif numbers_left[-1] > numbers_left[0]: return -1, numbers_left[-1] else: return 0, numbers_left...
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def _Run(args, holder, target_https_proxy_arg, release_track): """Issues requests necessary to import target HTTPS proxies.""" client = holder.client resources = holder.resources target_https_proxy_ref = target_https_proxy_arg.ResolveAsResource( args, holder.resources, default_scope=compute_s...
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def get_mono_cell(locus_file, TotalSNPs, TotalBi_SNPs_used): """Determine value to add to [0,0] cell""" TotalBP, Loci_count = totalbp(locus_file) return int((TotalBi_SNPs_used * TotalBP) / TotalSNPs) - TotalBi_SNPs_used, \ TotalBP, Loci_count
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def remove_bad_particles(st, min_rad='calc', max_rad='calc', min_edge_dist=2.0, check_rad_cutoff=[3.5, 15], check_outside_im=True, tries=50, im_change_frac=0.2, **kwargs): """ Removes improperly-featured particles from the state, based on a combination of pa...
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def _pyside_import_module(moduleName): """ The import for PySide """ pyside = __import__('PySide', globals(), locals(), [moduleName], -1) return getattr(pyside, moduleName)
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import unicodedata def sanitize_str(value: str) -> str: """Removes Unicode control (Cc) characters EXCEPT for tabs (\t), newlines (\n only), line separators (U+2028) and paragraph separators (U+2029).""" return "".join(ch for ch in value if unicodedata.category(ch) != 'Cc' and ch not in {'\t', '\n', '\u2028', '\u20...
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def get_tariff_estimated(reporter, partner='000', product='all', year=world_trade_data.defaults.DEFAULT_YEAR, name_or_id='name'): """Tariffs (estimated)""" return _get_data(reporter, partner, product, year, ...
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def task_result_api_view(request, taskid): """ Get task `state` and `result` from API endpoint. Use case: you want to provide to some user with async feedback about about status of some task. Example: # urls.py urlpatterns = [ url(r'^api/task/result/(.+)/', task_result...
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def get_horizon_coordinates(fp_pointings_spherical): """ It converts from spherical to Horizon coordinates, with the conventions: Altitute = np.pi / 2 - zenith angle (theta) Azimuth = 2 * np.pi - phi Parameters ---------- fp_pointings_spherical : numpy array of shape (..., 2), radians...
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from typing import Any def patch_object_type() -> None: """ Patches `graphene.ObjectType` to make it indexable at runttime. This is necessary for it be generic at typechecking time. """ # Lazily import graphene as it is actually an expensive thing to do and we don't want to slow down things at ...
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import time def date_format(time_obj=time, fmt='%Y-%m-%d %H:%M:%S') -> str: """ 时间转字符串 :param time_obj: :param fmt: :return: """ _tm = time_obj.time() _t = time.localtime(_tm) return time.strftime(fmt, _t)
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from typing import Optional def clean_pin_cite(pin_cite: Optional[str]) -> Optional[str]: """Strip spaces and commas from pin_cite, if it is not None.""" if pin_cite is None: return pin_cite return pin_cite.strip(", ")
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def instrument_code_to_name(rwc_instrument_code): """Use the rwc_instrument_map.json to convert an rwc_instrument_code to its instrument name. Parameters ---------- rwc_instrument_code : str Two character instrument code Returns ------- instrument_name : str Full instru...
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def record_time(ad, fallback_to_launch=True): """ RecordTime falls back to launch time as last-resort and for jobs in the queue For Completed/Removed/Error jobs, try to update it: - to CompletionDate if present - else to EnteredCurrentStatus if present - else fall back to launch tim...
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def getTeamCompatibility(mentor, team): """ Gets a "compatibility score" between a mentor and a team (used as the weight in the later optimization problem) Uses the functions defined above to compute different aspects of the score """ score = 0 # find value from overlapping availabilities # value may differ dep...
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def mean_edges(graph, feat, weight=None): """Averages all the values of edge field :attr:`feat` in :attr:`graph`, optionally multiplies the field by a scalar edge field :attr:`weight`. Parameters ---------- graph : DGLGraph The graph. feat : str The feature field. weight : o...
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from typing import Optional async def update_config_file(config: ConfigDTO, reboot_processor: Optional[bool] = True): """ Overwrites the configuration used by the processor. """ config_dict = map_to_file_format(config) success = update_config(config_dict, reboot_processor) if not success: ...
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import requests def integration_session(scope="session"): """ creates a Session object which will persist over the entire test run ("session"). http connections will be reused (higher performance, less resource usage) Returns a Session object """ s = requests.sessions.Session() s.headers.u...
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import json def get_json_dump(json_object, indent=4, sort_keys=False): """ Short handle to get a pretty printed str from a JSON object. """ return json.dumps(json_object, indent=indent, sort_keys=sort_keys)
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from re import S def number_of_real_roots(f, *gens, **args): """Returns the number of distinct real roots of `f` in `(inf, sup]`. Examples ======== >>> from sympy import Poly >>> from sympy.abc import x, y >>> from sympy.polys.polyroots import number_of_real_roots...
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def heap_sort(arr: list): """ Heap sorting a list. Big-O: O(n log n). @see https://www.geeksforgeeks.org/heap-sort/ """ def heapify(sub: list, rdx: int, siz: int): """ Heapifying range between rdx and size ([rdx:siz]). @param sub: a slice of list. @param rdx: root/p...
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def find_max_path(triangle): """ Find maximum-sum path from top of triangle to bottom """ # Start by copying the values sums = [[x for x in row] for row in triangle] # Efficient algorithm: start at the bottom and work our way up, computing max sums for reverse_index, row in enumerate(reverse...
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def plot_partregress(results, exog_idx=None, xnames=None, grid=None, fig=None): """Plot partial regression for a set of regressors. Parameters ---------- results : results instance A regression model results instance exog_idx : None or list of int (column) indices of the exog used i...
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def ufloats_overlap_range(ufloats, vmin, vmax): """Return whether the +/- 1 sigma range overlaps the value range.""" vals = [] sigmas = [] for val in ufloats: if isinstance(val, float): vals.append(val) sigmas.append(0) else: vals.append(val.nominal_va...
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from typing import Tuple import multiprocessing import itertools def exact_qaoa_values_on_grid( graph: nx.Graph, xlim: Tuple[float, float] = (0, np.pi / 2), ylim: Tuple[float, float] = (-np.pi / 4, np.pi / 4), x_grid_num: int = 20, y_grid_num: int = 20, num_processors: ...
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def typecheck_eq(expr, ctxt=[]): """(par (A) (= A A Bool :chainable)) (par (A) (distinct A A Bool :pairwise)) """ typ = typecheck_expr(expr.subterms[0], ctxt) for term in expr.subterms[1:]: t = typecheck_expr(term, ctxt) if t != typ: if not (is_subtype(t, typ) or is_subty...
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def precision(x, for_sum=False): """ This function returns the precision of a given datatype using a comporable numpy array """ if not for_sum: return np.finfo(x.dtype).eps else: return np.finfo(x.dtype).eps * x.size
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def parse_line(line, line_count, retries): """Coordinate retrieval of scientific name or taxonomy ID. Read line from input file, calling functions as appropriate to retrieve scientific name or taxonomy ID. :param line: str, line from input file :line_count: number of line in input file - enable tr...
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def prop_rotate(old_image, theta, **kwargs): """Rotate and shift an image via interpolation (bilinear by default) Parameters ---------- old_image : numpy ndarray Image to be rotated theta : float Angle to rotate image in degrees counter-clockwise Retur...
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from typing import Dict from typing import Any def append_tf_example(data: Dict[Text, Any], schema: Dict[Text, Any]) -> tf.train.Example: """Add tf example to row""" feature = {} for key, value in data.items(): data_type = schema[key] value = CONVERTER_MAPPING[data_ty...
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def can_login(email, password): """Validation login parameter(email, password) with rules. return validation result True/False. """ login_user = User.find_by_email(email) return login_user is not None and argon2.verify(password, login_user.password_hash)
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def toPlanar(arr: np.ndarray, shape: tuple = None) -> np.ndarray: """ Converts interleaved frame into planar Args: arr (numpy.ndarray): Interleaved frame shape (tuple, optional): If provided, the interleaved frame will be scaled to specified shape before converting into planar Returns:...
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def downsample_grid( xg: np.ndarray, yg: np.ndarray, distance: float, mask: np.ndarray = None ) -> tuple[np.ndarray, np.ndarray, np.ndarray]: """ Downsample grid locations to approximate spacing provided by 'distance'. Notes ----- This implementation is more efficient than the 'downsample_xy' f...
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def convert_12bit_to_type(image, desired_type=np.uint8): """ Converts the 12-bit tiff from a 6X sensor to a numpy compatible form :param desired_type: The desired type :return: The converted image in numpy.array format """ image = image / MAX_VAL_12BIT # Scale to 0-1 image = np.iinfo(desire...
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def dm_hdu(hdu): """ Compute DM HDU from the actual FITS file HDU.""" if lsst.afw.__version__.startswith('12.0'): return hdu + 1 return hdu
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