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def Class_Property (getter) : """Return a descriptor for a property that is accessible via the class and via the instance. :: >>> from _TFL._Meta.Property import * >>> from _TFL._Meta.Once_Property import Once_Property >>> class Foo (object) : ... @Class_Property ...
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def naive_act_norm_initialize(x, axis): """Compute the act_norm initial `scale` and `bias` for `x`.""" x = np.asarray(x) axis = list(sorted(set([a + len(x.shape) if a < 0 else a for a in axis]))) min_axis = np.min(axis) reduce_axis = tuple(a for a in range(len(x.shape)) if a not in axis) var_sha...
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def cmpTensors(t1, t2, atol=1e-5, rtol=1e-5, useLayout=None): """Compare Tensor list data""" assert (len(t1) == len(t2)) for i in range(len(t2)): if (useLayout is None): assert(t1[i].layout == t2[i].layout) dt1 = t1[i].dataAs(useLayout) dt2 = t2[i].dataAs(useLayout) ...
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def auth(body): # noqa: E501 """Authenticate endpoint Return a bearer token to authenticate and authorize subsequent calls for resources # noqa: E501 :param body: Request body to perform authentication :type body: dict | bytes :rtype: Auth """ db = get_db() cust = db['Customer'].find...
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def make_feature(func, *argfuncs): """Return a customized feature function that adapts to different input representations. Args: func: feature function (callable) argfuncs: argument adaptor functions (callable, take `ctx` as input) """ assert callable(func) for argfunc in argfuncs: ...
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import ctypes def from_numpy(np_array: np.ndarray): """Convert a numpy array to another type of dlpack compatible array. Parameters ---------- np_array : np.ndarray The source numpy array that will be converted. Returns ------- pycapsule : PyCapsule A pycapsule containing...
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def lmsSubstringsAreEqual(string, typemap, offsetA, offsetB): """ Return True if LMS substrings at offsetA and offsetB are equal. """ # No other substring is equal to the empty suffix. if offsetA == len(string) or offsetB == len(string): return False i = 0 while True: aIsLMS...
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from .tools import nantrapz def synthesize_photometry(lbda, flux, filter_lbda, filter_trans, normed=True): """ Get Photometry from the given spectral information through the given filter. This function converts the flux into photons since the transmission provides the fraction o...
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def get_A_dash_floor_bath(house_insulation_type, floor_bath_insulation): """浴室の床の面積 (m2) Args: house_insulation_type(str): 床断熱住戸'または'基礎断熱住戸' floor_bath_insulation(str): 床断熱住戸'または'基礎断熱住戸'または'浴室の床及び基礎が外気等に面していない' Returns: float: 浴室の床の面積 (m2) """ return get_table_3(15, house_insula...
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def cancel_task_async(hostname, task_id): """Cancels a swarming task.""" return _call_api_async( None, hostname, 'task/%s/cancel' % task_id, method='POST')
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def generate_two_files_both_stress_strain(): """Generates two files that have both stress and strain in each file""" fname = {'stress': 'resources/double_stress.json', 'strain': 'resources/double_strain.json'} expected = [ # makes an array of two pif systems pif.System( pro...
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def recipe_edit(username, pk): """Page showing the possibility to edit the recipe.""" recipe_manager = RecipeManager(api_token=g.user_token) response = recipe_manager.get_recipe_response(pk) recipe = response.json() # shows 404 if there is no recipe, response status code is 404 or user is not the au...
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import re def load_data_file(filename): """loads a single file into a DataFrame""" regexp = '^.*/results/([^/]+)/([^/]+)/([^/]+).csv$' optimizer, blackbox, seed = re.match(regexp, filename).groups() f = ROOT + '/results/{}/{}/{}.csv'.format(optimizer, blackbox, seed) result = np.genfromtxt(f, deli...
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def get_hub_manager(): """Generate Hub plugin structure""" global _HUB_MANAGER if not _HUB_MANAGER: _HUB_MANAGER = _HubManager(_plugins) return _HUB_MANAGER
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def extract_stimtype( data: pd.DataFrame, stimtype: str, columns: list ) -> pd.DataFrame: """ Get trials with matching label under stimType """ if stimtype not in accept_stimtype: raise ValueError(f"invalid {stimtype}, only accept {accept_stimtype}") get = columns.copy() get += ["par...
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def compute_rank_clf_loss(hparams, scores, labels, group_size, weight): """ Compute ranking/classification loss Note that the tfr loss is slightly different than our implementation: the tfr loss is sum over all loss and devided by number of queries; our implementation is sum over all loss and devided by...
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import string def get_org_image_url(url, insert_own_log=False): """ liefert gegebenenfalls die URL zum Logo der betreffenden Institution """ #n_pos = url[7:].find('/') # [7:] um http:// zu ueberspringen #org_url = url[:n_pos+7+1] # einschliesslich '/' item_containers = get_image_items(ELIXIER_LOGOS_PATH) ...
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import asyncio import logging async def download_page(url, file_dir, file_name, is_binary=False): """ Fetch URL and save response to file Args: url (str): Page URL file_dir (pathlib.Path): File directory file_name (str): File name is_binary (bool): True if should download ...
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def normal_coffee(): """ when the user decides to pick a normal or large cup of coffee :return: template that explains how to make normal coffee """ return statement(render_template('explanation_large_cup', product='kaffee'))
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def _transitive_closure_dense_numpy(A, kind='metric', verbose=False): """ Calculates Transitive Closure using numpy dense matrix traversing. """ C = A.copy() n, m = A.shape # Check if diagonal is all zero if sum(np.diagonal(A)) > 0: raise ValueError("Diagonal has to be zero for matr...
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def convert_date(raw_dates: pd.Series) -> pd.Series: """Automatically converts series containing raw dates to specific format. Parameters ---------- raw_dates: Series to be converted. Returns ------- Optimized pandas series. """ raw_dates = pd.to_datetime(raw_dates,...
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async def get_scorekeeper_by_id(scorekeeper_id: conint(ge=0, lt=2**31)): """Retrieve a Scorekeeper object, based on Scorekeeper ID, containing: Scorekeeper ID, name, slug string, and gender.""" try: scorekeeper = Scorekeeper(database_connection=_database_connection) scorekeeper_info = scorek...
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from datetime import datetime def get_time(sec_scale): """time since epoch in milisecond """ if sec_scale == 'sec': scale = 0 elif sec_scale == 'msec': scale = 3 else: raise secs = (datetime.utcnow() - datetime.utcfromtimestamp(0)).total_seconds() return int(secs *...
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import urllib import json def get_json(url): """ Function that retrieves a json from a given url. :return: the json that was received """ with urllib.request.urlopen(url) as response: data = response.readall().decode('utf-8') data = json.loads(data) return data
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def _defaultChangeProvider(variables,wf): """ by default we just forword the message to the change provider """ return variables
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def GPPrediction(y_train, X_train, T_train, eqid_train, sid_train = None, lid_train = None, X_new = None, T_new = None, eqid_new = None, sid_new = None, lid_new = None, dc_0 = 0., Tid_list = None, Hyp_list = None, phi_0 = None, tau_0 = None,...
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def zdotu(x, y): """ This function computes the complex scalar product \M{x^T y} for the vectors x and y, returning the result. """ return _gslwrap.gsl_blas_zdotu(x, y, 1j)
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def music21_to_chord_duration(p, key): """ Takes in a Music21 score, and outputs three lists List for chords (by primeFormString string name) List for chord function (by romanNumeralFromChord .romanNumeral) List for durations """ p_chords = p.chordify() p_chords_o = p_chords.flat.getElem...
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def city_country(city, country, population=''): """Generate a neatly formatted city/country name.""" full_name = city + ', ' + country if population: return full_name.title() + ' - population ' + str(population) else: return full_name.title()
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def generate_headermap(line,startswith="Chr", sep="\t"): """ >>> line = "Chr\\tStart\\tEnd\\tRef\\tAlt\\tFunc.refGene\\tGene.refGene\\tGeneDetail.refGene\\tExonicFunc.refGene\\tAAChange.refGene\\tsnp138\\tsnp138NonFlagged\\tesp6500siv2_ea\\tcosmic70\\tclinvar_20150629\\tOtherinfo" >>> generate_heade...
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def max(q): """Return the maximum of an array or maximum along an axis. Parameters ---------- q : array_like Input data Returns ------- array_like Maximum of an array or maximum along an axis """ if isphysicalquantity(q): return q.__class__(np.max(q.value), ...
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from typing import OrderedDict def make_failure_log(conclusion_pred, premise_preds, conclusion, premises, coq_output_lines=None): """ Produces a dictionary with the following structure: {"unproved sub-goal" : "sub-goal_predicate", "matching premises" : ["premise1", "premise2", .....
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import requests def request(url=None, json=None, parser=lambda x: x, encoding=None, **kwargs): """ :param url: :param json: :param parser: None 的时候返回r,否则返回 parser(r.json()) :param kwargs: :return: """ method = 'post' if json is not None else 'get' # 特殊情况除外 logger.info(f"Request M...
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import math def log_density_igaussian(z, z_var): """Calculate log density of zero-mean isotropic gaussian distribution given z and z_var.""" assert z.ndimension() == 2 assert z_var > 0 z_dim = z.size(1) return -(z_dim/2)*math.log(2*math.pi*z_var) + z.pow(2).sum(1).div(-2*z_var)
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def denom(r,E,J,model): """solve the denominator""" ur = model.potcurve(r)#model.potcurve[ (abs(r-model.rcurve)).argmin()] return 2.0*(E-ur)*r*r - J*J;
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def approximate_gaussians(confidence_array, mean_array, variance_array): """ Approximate gaussians with given parameters with one gaussian. Approximation is performed via minimization of Kullback-Leibler divergence KL(sum_{j} w_j N_{mu_j, sigma_j} || N_{mu, sigma}). Parameters ---------- confi...
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from typing import Callable import types def return_loss(apply_fn: Callable[[jnp.ndarray, jnp.ndarray], jnp.ndarray], steps: types.Transition): """Loss wrapper for ReturnMapper. Args: apply_fn: applies a transition model (o_t, a_t) -> (o_t+1, r), expects the leading axis to index the ba...
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def part_two(data): """Part two""" array = ['a', 'b', 'c', 'd', 'e', 'f', 'g', 'h', 'i', 'j', 'k', 'l', 'm', 'n', 'o', 'p'] commands = data.split(',') for _ in range(1000000000 % 30): dance(array, commands) return ''.join(map(str, array))
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def readCSVPremadeGroups(filename, studentProperties=None): """studentProperties is a list of student properties in the order they appear in the CSV. For example, if a CSV row (each group is a row) is as follows: "Rowan Wilson, [email protected], 1579348, Bob Tilano, [email protected], 57387294" Then the format is:...
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def random_contrast(video, lower, upper, seed=None): """Adjust the contrast of an image or images by a random factor. Equivalent to `adjust_contrast()` but uses a `contrast_factor` randomly picked in the interval `[lower, upper)`. For producing deterministic results given a `seed` value, use `tf.i...
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from typing import Dict def load(df: DataFrame, config: Dict, logger) -> bool: """Write data in final destination :param df: DataFrame to save. :type df: DataFrame :param config: job configuration :type config: Dict :param logger: Py4j Logger :type logger: Py4j.Logger :return: True ...
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def phase_correct_zero(spec, phi): """ Correct the phases of a spectrum by phi radians Parameters ---------- spec : float array of complex dtype The spectrum to be corrected. phi : float Returns ------- spec : float array The phase corrected spectrum ...
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def upsample(s, n, phase=0): """Increase sampling rate by integer factor n with included offset phase. """ return np.roll(np.kron(s, np.r_[1, np.zeros(n-1)]), phase)
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def parse_idx_inp(idx_str): """ parse idx string """ idx_str = idx_str.strip() if idx_str.isdigit(): idxs = [int(idx_str)] if '-' in idx_str: [idx_begin, idx_end] = idx_str.split('-') idxs = list(range(int(idx_begin), int(idx_end)+1)) return idxs
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import requests def toggl_request_get(url: str, params: dict = False) -> requests.Response: """Send a GET request to specified url using toggl headers and configured auth""" headers = {"Content-Type": "application/json"} auth = (CONFIG["toggl"]["api_token"], "api_token") response = requests.get(url, h...
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def sample_point_cloud(source, target, sample_indices=[2]): """ Resamples a source point cloud at the coordinates of a target points Uses the nearest point in the target point cloud to the source point Parameters ---------- source: array Input point cloud target: array...
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def make_satellite_gsp_pv_map(batch: Batch, example_index: int, satellite_channel_index: int): """Make a animation of the satellite, gsp and the pv data""" trace_times = [] times = batch.satellite.time[example_index] pv = batch.pv for time in times: trace_times.append( make_sate...
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def raw_to_engineering_product(product, idbm): """Apply parameter raw to engineering conversion for the entire product. Parameters ---------- product : `BaseProduct` The TM product as level 0 Returns ------- `int` How many columns where calibrated. """ col_n = 0 ...
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def paginate(objects, page_num, per_page, max_paging_links): """ Return a paginated page for the given objects, giving it a custom ``visible_page_range`` attribute calculated from ``max_paging_links``. """ paginator = Paginator(objects, per_page) try: page_num = int(page_num) except ...
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def _get_crop_frame(image, max_wiggle, tx, ty): """ Based on on the max_wiggle, determines a cropping frame. """ pic_width, pic_height = image.size wiggle_room_x = max_wiggle * .5 * pic_width wiggle_room_y = max_wiggle * .5 * pic_height cropped_width = pic_width - wiggle_room_x cropped_h...
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from re import U def __vigenere(s, key='virink', de=0): """维吉利亚密码""" s = str(s).replace(" ", "").upper() key = str(key).replace(" ", "").upper() res = '' i = 0 while i < len(s): j = i % len(key) k = U.index(key[j]) m = U.index(s[i]) if de: if m < k: ...
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def mask_unit_group(unit_group: tf.Tensor, unit_group_length: tf.Tensor, mask_value=0) -> tf.Tensor: """ Masks unit groups according to their length. Args: unit_group: A tensor of rank 3 with a sequence of unit feature vectors. unit_group_length: The length of the unit group (assumes all unit f...
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def fill_session_team(team_id, session_id, dbsession=DBSESSION): """ Use the FPL API to get list of players in an FPL squad with id=team_id, then fill the session team with these players. """ # first reset the team reset_session_team(session_id, dbsession) # now query the API players = f...
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def create_map(users_info): """ This function builds an HTML map with locations of user's friends on Twitter. """ my_map = folium.Map( location=[49.818396058511645, 24.02258071000576], zoom_start=10) folium.TileLayer('cartodbdark_matter').add_to(my_map) folium.TileLayer('stamentoner'...
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def l2sq(x): """Sum the matrix elements squared """ return (x**2).sum()
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def normalize(arr, axis=None): """ Normalize a vector between 0 and 1. Parameters ---------- arr : numpy.ndarray Input array axis : integer Axis along which normalization is computed Returns ------- arr : numpy.ndarray Normalized version of the input array ...
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def successive_substitution(m, T, P, max_iter, M, Pc, Tc, omega, delta, Aij, Bij, delta_groups, calc_delta, K, steps=0): """ Find K-factors by successive substitution Iterate to find a converged set of K-factors defining the gas/liquid partitioning of a mixture using su...
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import re def Match(context, pattern, arg=None): """Do a regular expression match against the argument""" if not arg: arg = context.node arg = Conversions.StringValue(arg) bool = re.match(pattern, arg) and boolean.true or boolean.false return bool
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def rr_rectangle(rbins, a, b): """ RR_rect(r; a, b) """ return Frr_rectangle(rbins[1:], a, b) - Frr_rectangle(rbins[:-1], a, b)
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def update_type(title, title_new=None, description=None, col_titles_new={}): """Method creates data type Args: title (str): current type title title_new (str): new type title description (str): type description col_titles_new (dict): new column values (key - col id, value - col valu...
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def api(repos_path): """Glottolog instance from shared directory for read-only tests.""" return pyglottolog.Glottolog(str(repos_path))
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from presqt.targets.osf.utilities.utils.async_functions import run_urls_async import requests def get_all_paginated_data(url, token): """ Get all data for the requesting user. Parameters ---------- url : str URL to the current data to get token: str User's OSF token Retu...
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def alaw_decode(x_a, quantization_channels, input_int=True, A=87.6): """alaw_decode(x_a, quantization_channels, input_int=True) input ----- x_a: np.array, mu-law waveform quantization_channels: int, Number of channels input_int: Bool True: convert x_mu (int) from int to float, bef...
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import dateutil def swap_year_for_time(df, inplace): """Internal implementation to swap 'year' domain to 'time' (as datetime)""" if not df.time_col == "year": raise ValueError("Time domain must be 'year' to use this method") ret = df.copy() if not inplace else df index = ret._data.index ...
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from typing import Optional from typing import List def get_orders( db: Session, skip: int = 0, limit: int = 50, moderator: str = None, owner: str = None, desc: bool = True, ) -> Optional[List[entities.Order]]: """ Get the registed orders using filters. Args: - db: the dat...
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def create_data_loader(img_dir, info_csv_path, batch_size): """Returns a data loader for the model.""" img_transform = transforms.Compose([transforms.Resize((120, 120), interpolation=Image.BICUBIC), transforms.ToTensor()]) img_dataset = FashionDataset(img_dir, img_tra...
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def comp_number_phase_eq(self): """Compute the equivalent number of phase Parameters ---------- self : LamSquirrelCage A LamSquirrelCage object Returns ------- qb: float Zs/p """ return self.slot.Zs / float(self.winding.p)
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import sympy def exprOps(expr): """This operation estimation is not handling some simple optimizations that should be done (i.e. y-x is treated as -1*x+y) and it is overestimating multiplications in situations such as divisions. This is as a result of the simple method of implementing this function ...
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def ellipsis_reformat(source: str) -> str: """ Move ellipses (``...``) for type stubs onto the end of the stub definition. Before: .. code-block:: python def foo(value: str) -> int: ... After: .. code-block:: python def foo(value: str) -> int: ... :param source: The source to reformat. :re...
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def build_wtk_filepath(region, year, resolution=None): """ A utility for building WIND Toolkit filepaths. Args: region (str): region in which the lat/lon point is located (see `get_regions`) year (int): year to be accessed (see `get_regions`) resolution (:obj:`str`, option...
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import logging def init_doc(args: dict) -> dict: """ Initialize documentation variable :param args: A dictionary containing relevant documentation fields :return: """ doc = {} try: doc[ENDPOINT_PORT_KEY] = args[ENDPOINT_PORT_KEY] except KeyError: logging.warning("No port fo...
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def decode_entities(string): """ Decodes HTML entities in the given string ("&lt;" => "<"). """ # http://snippets.dzone.com/posts/show/4569 def replace_entity(match): hash, hex, name = match.group(1), match.group(2), match.group(3) if hash == "#" or name.isdigit(): if hex == ...
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def convert2board(chrom, rows, cols): """ Converts the chromosome represented in a list into a 2D numpy array. :param rows: number of rows associated with the board. :param cols: number of columns associated with the board. :param chrom: chromosome to be converted. :return: 2D numpy array. "...
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def filter_halo_pnum(data, Ncut=1000): """ Returns indicies of halos with more than Ncut particles""" npart = np.array(data['np'][0]) ind =np.where(npart > Ncut)[0] print("# of halos:",len(ind)) return ind
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def _preprocess_sgm(line, is_sgm): """Preprocessing to strip tags in SGM files.""" if not is_sgm: return line # In SGM files, remove <srcset ...>, <p>, <doc ...> lines. if line.startswith("<srcset") or line.startswith("</srcset"): return "" if line.startswith("<refset") or line.start...
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def discover(using, index="*"): """ :param using: Elasticsearch client :param index: Comma-separated list or wildcard expression of index names used to limit the request. """ indices = Indices() for index_name, index_detail in using.indices.get(index=index).items(): indices[index_name] =...
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from datetime import datetime def quote_sql_value(cursor: Cursor, value: SQLType) -> str: """ Use the SQL `quote()` function to return the quoted version of `value`. :returns: the quoted value """ if isinstance(value, (int, float, datetime)): return str(value) if value is None: ...
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def create_admin_nova_client(context): """ Creates client that uses trove admin credentials :return: a client for nova for the trove admin """ client = create_nova_client(context, password=CONF.nova_proxy_admin_pass) return client
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def page_cache(timeout=1800): """ page cache param: timeout:the deadline of cache default is 1800 """ def _func(func): def wrap(request, *a, **kw): key = request.get_full_path() #pass chinese try: key = mkey.encode("utf-8") except Exception, e: key = str(key) data = None try: d...
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def get_available_games(): """Get a list of games that are available to join.""" games = Game.objects.filter(started=False) #pylint: disable=no-member if len(games) == 0: options = [('', '- None -')] else: options = [('', '- Select -')] for game in games: options.append((game...
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def process_ps_stdout(stdout): """ Process the stdout of the ps command """ return [i.split()[0] for i in filter(lambda x: x, stdout.decode("utf-8").split("\n")[1:])]
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import shlex def chpasswd(path, oldpassword, newpassword): """Change password of a private key. """ if len(newpassword) != 0 and not len(newpassword) > 4: return False cmd = shlex.split('ssh-keygen -p') child = pexpect.spawn(cmd[0], cmd[1:]) i = child.expect(['Enter file in which the key is',...
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def get_display_limits(VarInst, data=None): """Get limits to resize the display of Variables. Function takes as argument a `VariableInstance` from a `Section` or `Planform` and an optional :obj:`data` argument, which specifies how to determine the limits to return. Parameters ---------- Va...
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def plot_layer_consistency_example(eigval_col, eigvec_col, layernames, layeridx=[0,1,-1], titstr="GAN", figdir="", savelabel="", use_cuda=False): """ Note for scatter plot the aspect ratio is set fixed to one. :param eigval_col: :param eigvec_col: :param nsamp: :param titstr: :param figdir: ...
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def min_vertex_cover(left_v, right_v): """ Use the Hopcroft-Karp algorithm to find a maximum matching or maximum independent set of a bipartite graph. Next, find a minimum vertex cover by finding the complement of a maximum independent set. The function takes as input two dictionaries, one for t...
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def neighbor_dist(x1, y1, x2, y2): """Return distance of nearest neighbor to x1, y1 in x2, y2""" m1, m2, d12 = match_xy(x2, y2, x1, y1, neighbors=1) return d12
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import requests def add_artist_subscription(auth, userid, artist_mbid): """ Add an artist to the list of subscribed artists. :param tuple auth: authentication data (username, password) :param str userid: user ID (must match auth data) :param str artist_mbid: musicbrainz ID of the artist to add ...
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from pathlib import Path import pickle def get_built_vocab(dataset: str) -> Vocab: """load vocab file for `dataset` to get Vocab based on selected client and data in current directory Args: dataset (str): string of dataset name to get vocab Returns: if there is no built vocab file for `da...
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from typing import Optional from typing import Iterable def binidx(num: int, width: Optional[int] = None) -> Iterable[int]: """ Returns the indices of bits with the value `1`. Parameters ---------- num : int The number representing the binary state. width : int, optional Minimum n...
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import math def distance_vinchey(f, a, start, end): """ Uses Vincenty formula for distance between two Latitude/Longitude points (latitude,longitude) tuples, in numeric degrees. f,a are ellipsoidal parameters Returns the distance (m) between two geographic points on the ellipsoid and...
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def py_cpu_nms(dets, thresh): """Pure Python NMS baseline.""" # x1、y1、x2、y2、以及score赋值 dets = np.array(dets) x1 = dets[:, 0] y1 = dets[:, 1] x2 = dets[:, 2] y2 = dets[:, 3] scores = dets[:, 4] #每一个检测框的面积 areas = (x2 - x1 + 1) * (y2 - y1 + 1) #按照score置信度降序排序 order = score...
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def _romanize(word: str) -> str: """ :param str word: Thai word to be romanized, should have already been tokenized. :return: Spells out how the Thai word should be pronounced. """ if not isinstance(word, str) or not word: return "" word = _replace_vowels(_normalize(word)) res = _RE...
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def lookup_beatmap(beatmaps: list, **lookup): """ Finds and returns the first beatmap with the lookup specified. Beatmaps is a list of beatmap dicts and could be used with beatmap_lookup(). Lookup is any key stored in a beatmap from beatmap_lookup(). """ if not beatmaps: return None fo...
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def scott( x: BinaryFeatureVector, y: BinaryFeatureVector, mask: BinaryFeatureVector = None ) -> float: """Scott similarity Scott, W. A. (1955). Reliability of content analysis: The case of nominal scale coding. Public opinion quarterly, 321-325. Args: x (BinaryFeatureVector): binary f...
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import xmlrunner def get_test_runner(): """ Returns a test runner instance for unittest.main. This object captures the test output and saves it as an xml file. """ try: path = get_test_dir() runner = xmlrunner.XMLTestRunner(output=path) return runner except Exception, ...
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def _construct_capsule(geom, pos, rot): """Converts a cylinder geometry to a collider.""" radius = float(geom.get('radius')) length = float(geom.get('length')) length = length + 2 * radius return config_pb2.Collider( capsule=config_pb2.Collider.Capsule(radius=radius, length=length), rotation=_vec...
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def file_root_dir(tmpdir_factory): """Prepares the testing dirs for file tests""" root_dir = tmpdir_factory.mktemp('complex_file_dir') for file_path in ['file1.yml', 'arg/name/file2', 'defaults/arg/name/file.yml', 'defaults/arg/name/file2', ...
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from typing import Iterable def path_nucleotide_length(g: BifrostDiGraph, path: Iterable[Kmer]) -> int: """Compute the length of a path in nucleotides.""" if not path: return 0 node_iter = iter(path) start = next(node_iter) k = g.graph['k'] length = g.nodes[start]['length'] + k - 1...
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def extract_static_links(page_content): """Deliver the static asset links from a page source.""" soup = bs(page_content, "html.parser") static_js = [ link.get("src") for link in soup.findAll("script") if link.get("src") and "static" in link.get("src") ] static_images = [ ...
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def zero_inflated_nb(n, p, phi=0, size=None): """Models a zero-inflated negative binomial Something about hte negative binomail model here... This basically just wraps the numpy negative binomial generator, where the probability of a zero is additionally inflated by some probability, psi... P...
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