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def memoize_with_hashable_args(func): """Decorator for fast caching of functions which have hashable args. Note that it will convert np.NaN to None for caching to avoid this common case causing a cache miss. """ _cached_results_ = {} hash_override = getattr(func, "__hash_override__", None) i...
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def orthogonalize(vec1, vec2): """Given two vectors vec1 and vec2, project out the component of vec1 that is along the vec2-direction. @param[in] vec1 The projectee (i.e. output is some modified version of vec1) @param[in] vec2 The projector (component subtracted out from vec1 is parallel to this) ...
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import re def tokenize(text): """ Function to process text data taking following steps: 1) normalization and punctuation removal: convert to lower case and remove punctuations 2) tokenization: splitting each sentence into sequence of words 3) stop words removal: removal of words which ...
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def extract_text(bucketname, filepath): """Return OCR data associated with filepaths""" textract = boto3.client('textract') response = textract.detect_document_text( Document={ 'S3Object': { 'Bucket': bucketname, 'Name': filepath } }) ...
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def box1_input(input): """uses above to return input to player 1""" return get_input(1, input)
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def _get_xy_from_geometry(df): """ Return a numpy array with two columns, where the first holds the `x` geometry coordinate and the second column holds the `y` geometry coordinate """ # NEW: use the centroid.x and centroid.y to support Polygon() and Point() geometries x = df.geometry.centroi...
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def create_styled_figure( title, name=None, tooltips=None, plot_width=PLOT_WIDTH, ): """Return a styled, empty figure of predetermined height and width. Args: title (str): Title of the figure. name (str): Name of the plot for later retrieval by bokeh. If not given the ...
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def render_text(string, padding=5, width=None, height=None, size=12, font="Arial", fgcolor=(0, 0, 0), bgcolor=None): """ Render text to an image and return it Not specifying bgcolor will give a transparent image, but that will take a *lot* more work to build. Specifying a bgcolor, width...
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def pretty_spectrogram(d,log = True, thresh= 5, fft_size = 512, step_size = 64): """ creates a spectrogram log: take the log of the spectrgram thresh: threshold minimum power for log spectrogram """ specgram = np.abs(stft(d, fftsize=fft_size, step=step_size, real=False, compute_onesided=...
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def check_for_win(position, board, player): """ check for wins on 3x3 board on rows,cols,diag,anti-diag args: position (int 1-9, user input) board (np.array 2d) player ("X" or "O") """ #initialize win to False win = False #check win on rows for row in board: ...
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def wrap_http_exception(app: FastAPI): """ https://doc.acrobits.net/api/client/intro.html#web-service-responses """ @app.exception_handler(StarletteHTTPException) async def http_exception_handler(request, exc): return JSONResponse({'message': exc.detail}, exc.status_code)
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import random def perm_2sample(group1, group2, nrand=10000, tail=0, paired=True): # Take from JW's functions """ non-parametric permutation test (Efron & Tibshirani, 1998) tail = 0 (test A~=B), 1 (test A>B), -1 (test A<B) """ a = group1 b = group2 ntra = len(a) ntrb = len(b) ...
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def softmax_op(node): """ This function computes its softmax along an axis. Parameters: ---- node : Node Input variable. Returns: ---- A new Node instance created by Op. """ return SoftmaxOp()(node)
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def full_chain(): """ :return: Returns entire blockchain in memory (current_chain.blockchain) """ response = { 'chain': current_chain.blockchain, 'length': len(current_chain.blockchain), } return response, 200
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def normalizer(x, mi, ma, eps=1e-20, dtype=np.float32): """ Number expression evaluation for normalization Parameters ---------- x : np array of Image patch mi : minimum input percentile value ma : maximum input percentile value eps: avoid dividing by zero dtype: type of numpy array...
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def do(args): """ Main Entry Point. """ build_worktree = qibuild.parsers.get_build_worktree(args) sourceme = build_worktree.generate_sourceme() print(sourceme) return sourceme
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import json import traceback def policy_action(module, state=None, policy_name=None, policy_arn=None, policy_document=None, path=None, description=None): """ Execute the actions needed to bring the poli...
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def GET_v1_metrics_location(days=1): """Return some data about the locations users have reported from. """ if days > 7: days = 7 from_time = f'-{days}d' locations = fetch_graphite_sum('*.geoip.*', from_time=from_time) return jsonify(locations=locations)
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def add_default_to_usage_help( usage_help: str, default: str or int or float or bool ) -> str: """Adds default value to usage help string. Args: usage_help (str): usage help for click option. default (str or int or float): default value as string for click option. ...
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def describe_deformation(el_disps, bfg): """ Describe deformation of a thin incompressible 2D membrane in 3D space, composed of flat finite element faces. The coordinate system of each element (face), i.e. the membrane mid-surface, should coincide with the `x`, `y` axes of the `x-y` plane. ...
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import re def remove_emails(text): """Returns A String with the emails removed """ result = re.sub(EMAIL_REGEX, "", text) return result
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def _fit_model_residual_with_radial(lmparams, star, self, interpfunc): """Residual function for fitting individual profile parameters :param lmparams: lmfit Parameters object :param star: A Star instance. :param self: PSF instance :param interpfunc: The interpolation function ...
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def _whoami(): # type: () -> Tuple[str,str] """ Return the current operating system account as (username, fullname) """ username = getuser() fullname = username if GET_PW_NAM: pwnam = getpwnam(username) if pwnam: fullname = pwnam.pw_gecos.split(",", 1)[0] retu...
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from typing import Sequence def text_set_class( set_class: Sequence, ) -> str: """Converts a set class into a string representing its interval vector. """ id_dict = {0: "one", 1: "two", 2: "three", 3: "four", 4: "five", 5: "six"} ...
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def Span_read(stream): """Read a span from an 88.1 protocol stream.""" start = Address_read(stream) width = Offset_read(stream) return Span(start, width)
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def temp_database(tmpdir_factory): """ Initalize the Database """ tmpdb = str(tmpdir_factory.mktemp('temp'))+"/testdb.sqlite" return tmpdb
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import ast def get_classes(pyfile_path): """ Obtiene las clases que están dentro de un fichero python :param str pyfile_path: nombre del fichero a inspeccionar :return: devuelve una lista con todas las clases dentro de un fichero python :rtype: list .. code-block:: python >> get_cla...
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from typing import List def transpose_outer_dimensions(outer_dimensions: ST_Type, diff_dimensions: ST_Type, ports_to_transpose: List) -> Kind: """ Transpose the outer dimensions of a set of ports, move them inside the diff dimensions. The outer dimensions that are sseqs are the same for all elements, so t...
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def pad_or_clip_nd(tensor, output_shape): """Pad or Clip given tensor to the output shape. Args: tensor: Input tensor to pad or clip. output_shape: A list of integers / scalar tensors (or None for dynamic dim) representing the size to pad or clip each dimension of the input tensor. Ret...
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def dynamic_lstm(x, n_neuron, act_fn=tanh, seq_len=None): """ assert x is batch_major, aka [batch, time, ...] """ cell_class = lstm with tf.variable_scope("fw"): cell_fw = cell_class(n_neuron, activation=act_fn, cell_clip=15.0) o, s = tf.nn.dynamic_rnn( cell_fw, x, seq_len, ...
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def ho2ax_single(ho): """Conversion from a single set of homochoric coordinates to an un-normalized axis-angle pair :cite:`rowenhorst2015consistent`. Parameters ---------- ho : numpy.ndarray 1D array of (x, y, z) as 64-bit floats. Returns ------- ax : numpy.ndarray 1D a...
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import json def task_export_commit(request): """提交导出任务""" try: datas = json.loads(request.body.decode()) taskSetting = PlTaskSetting.objects.get(id=datas["params"]["id"]) try: exportJob = PlExportJob.objects.get(task_setting_id=taskSetting.id) except ObjectDoesNotEx...
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def getExceptionMessage(exceptionDetails: dict) -> str: """Get exception message from `exceptionDetails` object.""" exception = exceptionDetails.get('exception') if exception: return exception.get('description') message = exceptionDetails.get('text', '') stackTrace = exceptionDetails.get('st...
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def evaluate_by_net(net, input_fn, **kwargs): """encapsulate evaluate """ ret = evaluate( graph=net.graph, sess=net.session, fea_ph=net.features_ph, label_ph=net.labels_ph, outputs=net.outputs, input_fn=input_fn, **kwargs ) return ret
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import array def ordinate(values,maxrange,levels): """Ordinate values given a maximum data range and number of levels Parameters: 1. values: an array of continuous values to ordinate 2. maxrange: the maximum data range. Values larger than this will be saturated. 3. levels: the number of level...
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def is_start_state(state): """ Checks if the given state is a start state. """ return (state.g_pos.value == 0) and (state.theta.value == 'N')
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def days_in_month(year, month): """ return number of days in that month in that year """ if not 1 <= month <= 12: return 'Invalid Month' if month == 2 and is_leap(year): return 29 return month_days[month]
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def tmm_normal(fPath, bFilter=True): """ Function to obtain the Voom normal Count Args: fPath string Path with the raw counts outPath string File output bFilter Bool Bool to FIlter low expression genes Returns: tmm dataframe DataFrame with the log2(TMM) counts ...
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import base64 def np_to_base64(img_np): """ Convert numpy image (RGB) to base64 string """ img = Image.fromarray(img_np.astype("uint8"), "RGB") buffered = BytesIO() img.save(buffered, format="PNG") return "data:image/png;base64," + base64.b64encode( buffered.getvalue()).decode("asc...
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def sample_unknown_parameters(_params, _n=None): """ AW - sample_unknown_parameters - Sample the parameters we do not fix and hence wish to marginalize over. :param _params: SimpNameSp: dot accessible simple name space of simulation parameters. :return: SimpNameSp: dot accessible simple name spac...
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import logging def vector2Table (hdu, xlabel='wavelength',ylabel='flux') : """ Reads a 1-D vector from a FITS HDU into a Table. If present, the wavelength scale is hopefully in a simple, linear WCS! """ hdr = hdu.header if hdr['NAXIS'] != 1 : logging.error ('vector2Table can only construct 1-D tables!') ret...
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def get_zarr_size(fn): """Get size of zarr file excluding metadata""" # Open file grp = zarr.open_group(fn) # Collect size total = 0 for var in list(grp.keys()): total += grp[var].nbytes_stored return total
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def rotation_matrix(a, b): """ Calculate rotation matrix M, such that Ma is aligned to b Args: a: Initial vector direction b: Target direction """ # np.allclose might be safer here if np.array_equal(a, b): return np.eye(3) # Allow cases where a,b are not unit vectors, s...
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def saveuserprefs(): """ Fetch the preferences of the current user in JSON form """ user = current_user() j = request.get_json(silent=True) # Return the user preferences in JSON form uf = UserForm() uf.init_from_dict(j) err = uf.validate() if err: return jsonify(ok=False, err=e...
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import torch def make_features(batch, side, data_type='text'): """ Args: batch (Tensor): a batch of source or target data. side (str): for source or for target. data_type (str): type of the source input. Options are [text|img|audio]. Returns: A sequence of src/t...
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def page_dirs_to_file_name(page_dirs): """ [カテゴリ1,カテゴリ2,ページ]というディレクトリの配列状態になっているページパスを 「カテゴリ1_._カテゴリ2_._ページ」というファイル名形式に変換する。 :param page_dirs: :return: """ file_name = "" for page_dir in page_dirs: if page_dir: file_name = file_name + page_dir.strip() + '_._' fil...
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def has_field(feature_class, field_name): """Returns true if the feature class has a field named field_name.""" for field in arcpy.ListFields(feature_class): if field.name.lower() == field_name.lower(): return True return False
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from re import T def process_settings(settings: AttrDict, params: T.Optional[T.Set[str]] = None, ignore: T.Iterable[str]=()) -> AttrDict: """ Process an dict-like input parameters, according to the rules specified in the `Input parameter documentation <https://sqsgenerator.readthedocs.io/en/latest/input_...
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def serialize_block(block: dict) -> Block: """Serialize raw block from dict to structured and filtered custom Block object Parameters ---------- block : dict Raw KV block data from gRPC response Returns ------- Block Structured, custom defined Block object for more controll...
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from pandas import get_option def repr_pandas_Series(series, _): """ This function can be configured by setting the `max_rows` attributes. """ return series.to_string( max_rows=repr_pandas_Series.max_rows, name=series.name, dtype=series.dtype, length=get_option("displa...
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def convert_fmt(fmt): """rs.format to pyglet format string""" return { rs.format.rgb8: 'RGB', rs.format.bgr8: 'BGR', rs.format.rgba8: 'RGBA', rs.format.bgra8: 'BGRA', rs.format.y8: 'L', }[fmt]
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import math def train_ALS(train_data, validation_data, num_iters, reg_param, ranks): """ Grid Search Function to select the best model based on RMSE of hold-out data """ # initial min_error = float('inf') best_rank = -1 best_regularization = 0 best_model = None for rank in ranks: ...
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import copy def response_ack(**kwargs): """ Policy-based provisioning of ACK value. """ try: tlv, code, policy, post_c2c = kwargs["tlv"], kwargs["code"], kwargs["policy"], kwargs["post_c2c"] new_tlv = copy.deepcopy(tlv) if post_c2c is not True: ret = policy.get_ava...
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def is_file(path, use_sudo=False): """ Check if a path exists, and is a file. """ func = use_sudo and sudo or run with settings(hide('running', 'warnings'), warn_only=True): return func('[ -f "%(path)s" ]' % locals()).succeeded
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def bounded_random_walk(minval, maxval, delta_min, delta_max, T, dtype=tf.float32, dim=1): """ Simulates a random walk with boundary conditions. Used for data augmentation along entire tube. Based on: https://stackoverflow.com/questions/48777345/vectorized-random- ...
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def validate_photo_url(photo_url, required=False): """Parses and validates the given URL string.""" if photo_url is None and not required: return None if not isinstance(photo_url, str) or not photo_url: raise ValueError( 'Invalid photo URL: "{0}". Photo URL must be a non-empty ' ...
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def to_flp(stipples, dpi=300, x_mm=0, y_mm=0, laser_pwr=35000, ticks=500, base=100): """" Converts a set of stipples into a list of FLP packets dpi is the image's DPI x_mm and y_mm are the corner location of the image (default 0,0) (where 0,0 is the center of the b...
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def GetSchema(component): """convience function for finding the parent XMLSchema instance. """ parent = component while not isinstance(parent, XMLSchema): parent = parent._parent() return parent
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def ranked_bots_query(alias="ranked_bots"): """ Builds a query that ranks all bots. This is a function in case you need this as a subquery multiple times. """ return sqlalchemy.sql.select([ bots.c.user_id, bots.c.id.label("bot_id"), bots.c.mu, bots.c.sigma, b...
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def marathon_deployments_check(service): """Checks for consistency between deploy.yaml and the marathon yamls""" the_return = True pipeline_deployments = get_pipeline_config(service) pipeline_steps = [step['instancename'] for step in pipeline_deployments] pipeline_steps = [step for step in pipeline_...
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def get_book_info(book_id, books): """Obtain meta data of certain books. :param book_id: Books to look up :type: int or list of ints :param books: Dataframe containing the meta data :type: pandas dataframe :return: Meta data for the book ids :rtype: List[str], List[str], List[str] "...
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import functools import six def save_error_message(func): """ This function will work only if transition_entity is defined in kwargs and transition_entity is instance of ErrorMessageMixin """ @functools.wraps(func) def wrapped(*args, **kwargs): try: return func(*args, **kwa...
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def EMV(data,n=20,m=23): """ """ def emv(high,low,vol,n=14): MID = np.zeros(len(high)) MID[1:] = (np.array(high[1:])+np.array(low[1:])-np.array(high[:-1])-np.array(low[:-1]))/2. BRO = np.array(vol)/(100000000.*(np.array(high)-np.array(low))) EM = MID/BRO return ta.S...
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from typing import Tuple def desired_directions(state: np.ndarray) -> Tuple[np.ndarray, np.ndarray]: """Given the current state and destination, compute desired direction.""" destination_vectors = state[:, 4:6] - state[:, 0:2] directions, dist = normalize(destination_vectors) return directions, dist
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import operator def binary_repr(number, max_length = 1025): """ Return the binary representation of the input *number* as a string. This is more efficient than using :func:`base_repr` with base 2. Increase the value of max_length for very large numbers. Note that on 32-bit machines, 2**1023 ...
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def df_fc_overlap_9(): """Scenario case with 3 sets of 2 overlapping fragments, bound to a common combination of 2 redundant fragments.""" mol = Chem.MolFromSmiles('NC1C(O)C(CCCC2CC2CCC2CC2)C1CCC1CC(C(N)C1O)C1CCC(O)C(N)C1') return DataFrame([ ['mol_fc_overlap_9', 'XXX', 'O1', 0, 'O1:0', ...
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import requests import json def check_cal(es_url, es_index, id): """Query for calibration file with specified input ID.""" query = { "query":{ "bool":{ "must": [ { "term": { "_id": id } }, ] } }, "fields": [],...
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def mountpoint_create(name, size): """Service Layer to create mountpoint""" mountpoint = MountPoint(name, size) return mountpoint
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import requests import json def GetTSAWaitTimes(airportCode): """ Returns data from the TSA Wait Times API for a particular airport shortcode. :param airportCode: 3-letter shortcode of airport :return: Returns the full parsed json data from TSA Wait Times API """ base_url = "http://apps.tsa.dh...
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def False(context): """Function: <boolean> false()""" return boolean.false
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def namedtuple_to_dict(model_params): """Transfers model specification from a named tuple class object to dictionary.""" init_dict = {} init_dict["GENERAL"] = {} init_dict["GENERAL"]["num_periods"] = model_params.num_periods init_dict["GENERAL"]["num_choices"] = model_params.num_choices ...
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def roberts(stream: Stream, *args, **kwargs) -> FilterableStream: """https://ffmpeg.org/ffmpeg-filters.html#roberts""" return filter(stream, roberts.__name__, *args, **kwargs)
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import json def run_code(): """ codec api response { "error": { "decode:": "error message" }, "output": { "status_code": 0, "result": { "data_type": "event", "data": { "humidity": { "time": 1547...
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def build_dense_conf_block(x, filter_size=32, dropout_rate=None): """ builds a dense block according to https://arxiv.org/pdf/1608.06993.pdf :param x: :param dropout_rate: :param filter_size :return: """ x = BatchNormalization(axis=-1, epsilon=1.1e-5)(x) x = Activation('relu')(x) ...
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def _viz_flow(u, v, logscale=True, scaledown=6): """ Copied from @jswulff: https://github.com/jswulff/pcaflow/blob/master/pcaflow/utils/viz_flow.py top_left is zero, u is horizon, v is vertical red is 3 o'clock, yellow is 6, light blue is 9, blue/purple is 12 """ color_wheel = _color_wheel() n_cols =...
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def submission_history(request, course_id, learner_identifier, location): """Render an HTML fragment (meant for inclusion elsewhere) that renders a history of all state changes made by this user for this problem location. Right now this only works for problems because that's all StudentModuleHistory rec...
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def tou(month, weekday, hour): """ Calculate TOU pricing """ if weekday in [0, 6]: return OFFPEAK else: if month in [5, 6, 7, 8, 9, 10]: if hour in [11, 12, 13, 14, 15, 16]: return ONPEAK elif hour in [7, 8, 9, 10, 17, 18, 19, 20]: ...
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import json def get_job(request): """ Retrieve a specific Job URL: /admin/Jobs/GetOne :param request: :return: """ id = request.GET.dict().get("id") response = { 'status': 1, 'status_message': 'Success', 'job': job.objects.filter(id=id) } return HttpRe...
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def cpt_lvq_merid_deriv(temp, sphum): """Meridional derivative of c_p*T + L_v*q on pressure coordinates.""" deriv_obj = LatCenDeriv(cpt_lvq(temp, sphum), LAT_STR) return deriv_obj.deriv()
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def hubert_pretrain_large( encoder_projection_dropout: float = 0.0, encoder_attention_dropout: float = 0.0, encoder_ff_interm_dropout: float = 0.0, encoder_dropout: float = 0.0, encoder_layer_drop: float = 0.0, ) -> HuBERTPretrainModel: # Overriding the signature so that the return type is corre...
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def random_scaled_rotation(ralpha=(-0.2, 0.2), rscale=((0.8, 1.2), (0.8, 1.2))): """Compute a random transformation matrix for a scaled rotation. :param ralpha: range of rotation angles :param rscale: range of scales for x and y :returns: random transformation """ affine = np.eye(2) if rsc...
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import time def time_as_int() -> int: """ Syntactic sugar for >>> from time import time >>> int(time()) """ return int(time.time())
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from unittest.mock import Mock from unittest.mock import patch def test_end_response_is_one_send(): """Test that ``HAPServerHandler`` sends the whole response at once.""" class ConnectionMock: sent_bytes = [] def sendall(self, bytesdata): self.sent_bytes.append([bytesdata]) ...
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def compute_norm_cond_entropy_corr(data_df, attrs_from, attrs_to): """ Computes the correlations between attributes by calculating the normalized conditional entropy between them. The conditional entropy is asymmetric, therefore we need pairwise computation. The computed correlations are stored in ...
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def should_retry_http_code(status_code): """ :param status_code: (int) http status code to check for retry eligibility :return: (bool) whether or not responses with the status_code should be retried """ return status_code not in range(200, 500)
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def softmax(x): """Calculates the softmax for each row of the input x. Your code should work for a row vector and also for matrices of shape (n, m). Argument: x -- A numpy matrix of shape (n,m) Returns: s -- A numpy matrix equal to the softmax of x, of shape (n,m) """ # Apply exp() el...
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def inertia_tensor_eigvals(image, mu=None, T=None): """Compute the eigenvalues of the inertia tensor of the image. The inertia tensor measures covariance of the image intensity along the image axes. (See `inertia_tensor`.) The relative magnitude of the eigenvalues of the tensor is thus a measure of the...
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def extract_values(inst): """ :param inst: the instance :return: python values extracted from the instance """ # inst should already be python return inst
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def voc_ap(rec, prec, use_07_metric=False): """ ap = voc_ap(rec, prec, [use_07_metric]) Compute VOC AP given precision and recall. If use_07_metric is true, uses the VOC 07 11 point method (default:False). """ if use_07_metric: # 11 point metric ap = 0. for t in np.arange(0., 1.1, 0.1): if np.sum(rec ...
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def is_on_path(prog): """Checks if a given executable is on the current PATH.""" r = runcmd("which %s" % prog) if r.failed: return False else: return r
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def validate_entry(new_text) -> bool: """Função callback para validação de entrada dos campos na janela ExperimentPCR. É chamada toda vez que o usuário tenta inserir um valor no campo de entrada. Uma entrada válida deve atender os seguintes requisitos: -Ser composto apenas de números intei...
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import io def eia_cbecs_land_call(*, resp, url, **_): """ Convert response for calling url to pandas dataframe, begin parsing df into FBA format :param resp: df, response from url call :param url: string, url :return: pandas dataframe of original source data """ # Convert response to d...
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def add_l2_interface(interface_name, interface_desc=None, interface_admin_state="up", **kwargs): """ Perform a POST call to create an Interface table entry for physical L2 interface. :param interface_name: Alphanumeric Interface name :param interface_desc: Optional description for the interface. Defaul...
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import pkg_resources def language_descriptions(): """ Return a dict of `LanguageDesc` instances keyed by language name. """ global languages if languages is None: languages = {} for language in pkg_resources.WorkingSet().iter_entry_points( group='textx_languages'): ...
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import six def load_fixtures(fixtures_dict=None): """ Loads fixtures specified in fixtures_dict. This method must be used for fixtures that don't have associated data models. We simply want to load the meta into dict objects. fixtures_dict should be of the form: { 'actionchains': ['act...
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def generate_sbm(sizes, probs, maxweight=1): """Generate a Stochastic Block Model graph. Assign random values drawn from U({1, ..., maxw}) to the edges. sizes : list of sizes (int) of the blocks probs : matrix of probabilities (in [0, 1]) of edge creation between nodes dependi...
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import re def eq_portions(actual: str, expected: str): """ Compare whether actual matches portions of expected. The portions to ignore are of two types: - ***: ignore anything in between the left and right portions, including empty - +++: ignore anything in between left and right, but non-empty :p...
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def _get_encoder( in_features: int, embed_dim: int, dropout_input: float, pos_conv_kernel: int, pos_conv_groups: int, num_layers: int, num_heads: int, attention_dropout: float, ff_interm_features: int, ff_interm_dropout: float, drop...
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def _soft_threshold(a, b): """Soft-threshold operator for the LASSO and elastic net.""" return np.sign(a) * np.clip(np.abs(a) - b, a_min=0, a_max=None)
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def predict(input_tokens): """register predict method in pangu-alpha""" token_ids, valid_length = register.call_preprocess(preprocess, input_tokens) ############# two output ################### # p, p_args = register.call_servable(token_ids) # add_token = register.call_postprocess(postprocess, p, p_...
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