content
stringlengths
35
762k
sha1
stringlengths
40
40
id
int64
0
3.66M
def preprocess_data_for_clustering(df): """Prepare data in order to apply a clustering algorithm Parameters ---------- df : pandas.DataFrame Input data, *i.e.* city-related timeseries, supposed to have `station_id`, `ts` and `nb_bikes` columns Returns ------- pandas.DataFrame ...
144c701b3be12aed2a1488a08eb05c65c6d704c5
3,646,700
def chars(line): """Returns the chars in a TerminalBuffer line. """ return "".join(c for (c, _) in notVoids(line))
1ffad7e9d0cc800f8de579fa30aeb108a12bd8d2
3,646,701
def map_is_finite(query_points: tf.Tensor, observations: tf.Tensor) -> Dataset: """ :param query_points: A tensor. :param observations: A tensor. :return: A :class:`~trieste.data.Dataset` containing all the rows in ``query_points``, along with the tensor result of mapping the elements of ``obser...
e22571a179acfb8261924eaf71dec40d17adc47d
3,646,702
def docker_image_exists(args, image): # type: (EnvironmentConfig, str) -> bool """Return True if the image exists, otherwise False.""" try: docker_command(args, ['image', 'inspect', image], capture=True) except SubprocessError: return False return True
ba2eedacef0179b25d203f00cf42fb4f4e4f9b72
3,646,703
import os import shutil def remove_local(path): """Remove a local file or directory. Arguments: path (str): Absolute path to the file or directory. Returns: Boolean indicating result. """ if os.path.isfile(path): # Regular file remover = os.remove elif os.pat...
7267d37bab380b7a9dc103ee3002f9c454cf7bf2
3,646,704
def get_g2_fit_general_two_steps( g2, taus, function="simple_exponential", second_fit_range=[0, 20], sequential_fit=False, *argv, **kwargs, ): """ Fit g2 in two steps, i) Using the "function" to fit whole g2 to get baseline and beta (contrast) ii) Then using the obtained bas...
d02fbf1796e00b8f490a97a7f7274bab1233a823
3,646,705
import doctest def run_doctest(module, verbosity=None): """Run doctest on the given module. Return (#failures, #tests). If optional argument verbosity is not specified (or is None), pass test_support's belief about verbosity on to doctest. Else doctest's usual behavior is used (it searches sys.argv...
cc50538cf8cf50959a4c67eb1c37010d2eab45a9
3,646,706
def rate_matrix_arrhenius_time_segmented(energies, barriers, segment_temperatures, segment_start_times, t_range): """ Compute the rate matrix for each time ``t`` in ``t_range``, where the bath temperature is a piecewise constant function of time. The bath temperature function, by which the rate matrice...
78245c7452a41af91be5f57f0acc72cc67c2e2e0
3,646,707
def div_tensor(tensor, coords=(x, y, z), h_vec=(1, 1, 1)): """ Divergence of a (second order) tensor Parameters ---------- tensor : Matrix (3, 3) Tensor function function to compute the divergence from. coords : Tuple (3), optional Coordinates for the new reference system. This ...
8159dfc8b330f9184c336ba4cecabe2fdf0d7d55
3,646,708
import ast def convert_path_to_repr_exp(path, with_end=False): """ Generate a representative expression for the given path """ exp = "" #print("Path: {}".format(path)) for i in range(len(path)): if with_end == False and \ ((i == 0) or (i == len(path)-1)): con...
68dd8ea13ecdef6f2c3947a1e9341ff5e10ccf78
3,646,709
def cluster_create(context, values): """Create a cluster from the values dictionary.""" return IMPL.cluster_create(context, values)
593577a3d912a6a24e8f6d3b66d66e1d8f39a681
3,646,710
def compute_heading_error(est, gt): """ Args: est: the estimated heading as sin, cos values gt: the ground truth heading as sin, cos values Returns: MSE error and angle difference from dot product """ mse_error = np.mean((est-gt)**2) dot_prod = np.sum(est * gt, axis=1) ...
b015a5b904994372c6ca207388ee3db0ef477f0a
3,646,711
def _get_count_bid(soup: bs4.BeautifulSoup) -> int: """ Return bidding count from `soup`. Parameters ---------- soup : bs4.BeautifulSoup Soup of a Yahoo Auction page. Returns ------- int Count of total bidding. """ tags = soup.find_all('dt', text='入札件数') if...
066b1dcb519db10276dfce35ba04b04f5efdbe66
3,646,712
def _is_class(s): """Imports from a class/object like import DefaultJsonProtocol._""" return s.startswith('import ') and len(s) > 7 and s[7].isupper()
deee946066b5b5fc548275dd2cce7ebc7023626d
3,646,713
def evaluate(vsm, wordsim_dataset_path): """Extract Correlation, P-Value for specified vector space mapper.""" return evaluation.extract_correlation_coefficient( score_data_path=wordsim_dataset_path, vsm=vsm )
2e12b16eee43aef50b5a6de7d0d9fc5b9c806536
3,646,714
def longest_substring_using_lists(s: str) -> int: """ find the longest substring without repeating characters 644 ms 14.3 MB >>> longest_substring_using_lists("abac") 3 >>> longest_substring_using_lists("abcabcbb") 3 >>> longest_substring_using_lists("bbbbb") 1 >>> longest_subst...
4292af29c59ea6210cde28745f91f1e9573b7104
3,646,715
def getuserobj(user_id=None): """ 登录查询用户是否存在的专用接口函数 :param user_id: 用户id(username) :return: if exit: return 用户对象 else return None """ dbobj = connectMysql.connectMysql() if user_id is '' or user_id is None: dbobj.close_db() return None else: userdata ...
78f5cd9edd72b1ee838fb4b7cde73b3c960be0df
3,646,716
def _parse_track_df(df: pd.DataFrame, track_id: int, track_name: str, track_comment: str, data_year: int) -> dict: """ parses track data :param df: data representing a track :param track_id: track id :param track_name: track name :param track_comment: track comment :param...
a6ccd068829ebd0355d4d13ee327255c09615a16
3,646,717
from typing import Tuple from typing import Mapping def parse_tileset( tileset: TileSet ) -> Tuple[Mapping[Axes, int], TileCollectionData]: """ Parse a :py:class:`slicedimage.TileSet` for formatting into an :py:class:`starfish.imagestack.ImageStack`. Parameters: ----------- tileset : ...
d75b121e91d47424704de671c716d1fbf6b02e86
3,646,718
def pad_sents(sents, pad_token): """ Pad list of sentences(SMILES) according to the longest sentence in the batch. @param sents (list[list[str]]): list of SMILES, where each sentence is represented as a list of tokens @param pad_token (str): padding token @returns sen...
8f0eabfaaa18eafa84366a2f20ed2ddd633dacc6
3,646,719
def bicubic_interpolation_filter(sr): """Creates a bicubic interpolation filter.""" return _interpolation_filter(sr, cv2.INTER_CUBIC)
772ee384b90ae6b1e9fe875374441b3d59f86326
3,646,720
def is_receive_waiting(): """Check to see if a payload is waiting in the receive buffer""" #extern RADIO_RESULT radio_is_receive_waiting(void); res = radio_is_receive_waiting_fn() # this is RADIO_RESULT_OK_TRUE or RADIO_RESULT_OK_FALSE # so it is safe to evaluate it as a boolean number. return (...
8b2a8d1a003f89c3a9b8df7db0729e15a96fdfcc
3,646,721
import typing def residual_block( x, filters: int, weight_decay: float, *, strides: typing.Union[int, typing.Tuple[int, int]], dilation: typing.Union[int, typing.Tuple[int, int]], groups: int, base_width: int, downsample, use_basic_block: bool, use_cbam: bool, cbam_chan...
f2021a89e2d737e73bfef3fb7dc127c3bbb5d0b7
3,646,722
def vacancy_based_on_freq(service,duration,frequency,earliest,latest,local_timezone): """ Check vacant timeslot with the user inputed duration for the frequency/week the user inputed. service: get authentication from Google duration: the length of the new event (int) frequency: number of days i...
ba3d7b688170a7e03d849070eaae69ed718257d6
3,646,723
import os import importlib def load_extensions(): """ NOTE: This code is a copy of the code in econ_platform_core.extensions.__init__.py. I will need to figure out how to make this function not use the current directory. TODO: Merge this function with the one in econ_platform_core. Imports all ...
89c490d973d06621ac0c371a4204e4352462185b
3,646,724
def byte_list_to_nbit_le_list(data, bitwidth, pad=0x00): """! @brief Convert a list of bytes to a list of n-bit integers (little endian) If the length of the data list is not a multiple of `bitwidth` // 8, then the pad value is used for the additional required bytes. @param data List of bytes....
b92bbc28cc2ffd59ae9ca2e459842d7f4b284d18
3,646,725
def admin_not_need_apply_check(func): """ admin用户不需要申请权限检查 """ @wraps(func) def wrapper(view, request, *args, **kwargs): if request.user.username == ADMIN_USER: raise error_codes.INVALID_ARGS.format(_("用户admin默认拥有任意权限, 无需申请")) return func(view, request, *args, **kwargs)...
9592d3a4691761be1f58c8a404d7cbef9bd01116
3,646,726
def parse_headers(header_list): """ Convert headers from our serialized dict with lists for keys to a HTTPMessage """ header_string = b"" for key, values in header_list.items(): for v in values: header_string += \ key.encode('utf-8') + b":" + v.encode('utf-8')...
8a387a7a60044115c61838f1da853e4608e3840d
3,646,727
def _rrv_add_ ( s , o ) : """Addition of RooRealVar and ``number'' >>> var = ... >>> num = ... >>> res = var + num """ if not isinstance ( o , val_types ) : return NotImplemented if isinstance ( o , _RRV_ ) and not o.isConstant() : o = o.ve () elif hasattr ( o , '...
e3e41fe3ae53379f0b49a4a2aa14e3a401bae6b3
3,646,728
from haversine import haversine #import haversine function from library def stations_by_distance(stations, p): """This module sorts stations by distance and returns a list of (station, town, distance) tupules.""" list_station_dist = [] #initiates list to store stations and distance #it...
4a378090803b061b8ea9b17d6255038235c1b1ca
3,646,729
import hashlib def create_SHA_256_hash_of_file(file): """ Function that returns the SHA 256 hash of 'file'.\n Logic taken from https://www.quickprogrammingtips.com/python/how-to-calculate-sha256-hash-of-a-file-in-python.html """ sha256_hash = hashlib.sha256() with open(file, "rb") as f: ...
14f62a49ea54f5fceb719c4df601fde165f5e55c
3,646,730
def partition_average(partition): """Given a partition, calculates the expected number of words sharing the same hint""" score = 0 total = 0 for hint in partition: score += len(partition[hint])**2 total += len(partition[hint]) return score / total
944f514e925a86f3be431bd4d56970d92d16f570
3,646,731
import queue def set_params(config): """Configure parameters based on loaded configuration""" params = { 'path': None, 'minio': None, 'minio_access_key': None, 'minio_secret_key': None, 'minio_secure': True, 'minio_ca_certs': None, 'minio_bucket': 'catal...
b1cc87d88b656cb6d57dcb0579276de8f0d744e8
3,646,732
def post_stop_watch(): """ This method change watcher status to true and return -> "watching": false """ url = common.combine_url( config.INGESTION_AGENT_URL, config.INGESTION_WATCHER_STATUS, config.INGESTION_STOP_WATCHER, ) resp = base_requests.send_post_request(url) ...
2b7634c78bf46c6365aac89f4be6908d8baf1bcf
3,646,733
def combine_grad_fields(field1, field2): """ Combines two gradient fields by summing the gradiends in every point. The absolute values of each pixel are not interesting. Inputs: - field1: np.array(N, M) of Pixels. - field2: np.array(N, M) of Pixels. Output: - out_field: np.a...
7cbe02280c33d9ed077a5b39f3df347c08c11417
3,646,734
import time def start_queue_manager(hostname, portnr, auth_code, logger): """ Starts the queue manager process. """ p = Process(target=_queue_manager_target, args=(hostname, portnr, auth_code, logger)) p.start() for i in range(10): time.sleep(2) if get_event_queue(hostname, por...
428201417b76b896a3cdd6efe40b69a3cf297966
3,646,735
def edit_module_form(request, module_id): """ Only the instructor who is the creator of the course to which this module belongs can access this. """ course = Module.objects.get(moduleID=module_id).getCourse() if request.user.role != 1 or (course.instructorID.userID != request.user.userID): c...
ba1dc405c9249fb6227d0ed0d1cd0fc5b80caa78
3,646,736
def r2(y_true, y_pred): """ :math:`R^2` (coefficient of determination) regression score function. Best possible score is 1.0, lower values are worse. Args: y_true ([np.array]): test samples y_pred ([np.array]): predicted samples Returns: [float]: R2 """ return r2_...
3962c83a022cbab416a2914c0be749cf5b66d51e
3,646,737
def passstore(config, name): """Get password file""" return config.passroot / name
d0ca8c71650bd98dacd7d6ff9ed061aba3f2c43a
3,646,738
import json import sys def _get(url, **fields): """Get a GroupMe API url using urllib3. Can have arbitrary string parameters which will be part of the GET query string.""" fields["token"] = login.get_login() response = HTTP.request("GET", GROUPME_API + url, fields=fields) # 2XX Success if...
fcaa2153baf457a6370daa8eb3b35444c4677ca3
3,646,739
def coord_shell_array(nvt_run, func, li_atoms, species_dict, select_dict, run_start, run_end): """ Args: nvt_run: MDAnalysis Universe func: One of the neighbor statistical method (num_of_neighbor_one_li, num_of_neighbor_one_li_simple) li_atoms: Atom grou...
4a0b5f1417cb2184c866cf5ca5c138ed051f44a6
3,646,740
import os from datetime import datetime def get_events(number): """Shows basic usage of the Google Calendar API. Prints the start and name of the next 10 events on the user's calendar. """ # The file token.json stores the user's access and refresh tokens, and is # created automatically when the au...
a4a0ca917be06655a1aa77fddbdd8ccaf58424ba
3,646,741
def plot_transactions_ts(transactional_df, frequency="M", aggregation="n_purchases", reg=False, black_friday_dates=None, plot_black_friday=False, plot_normal_only=False, **kwargs): """ plota a evolucao das compras no tempo black_friday_dates:: list of datetime.date """ # preventing unwnated modific...
ba4764f91a37f4b88f63e52d7aa02660d8296d11
3,646,742
import time def generate_token(public_id): """ Simple token generator returning encoded JWT :param public_id: unique string user identification :return JWT: authorization token for given public_id """ # if User.query.filter_by(public_id=public_id).one_or_none() is None: # return jsonify(...
88bbaabfeb8ba666daf532cae22f7486349a9a9d
3,646,743
import logging def get_user_permission_all_url_list(user_id): """ 获取用户全部权限 url list :param user_id: 用户id :return: """ logging.info('get_user_permission_all_url_list') try: user_permission_list = db_get_user_permission_all_list(user_id) permission_url_list = list() f...
7ad115dea2d791a46fa10b5ff8553a8485c8167f
3,646,744
def plot_predicted_data(training_actual_df, predicted_df, date_col, actual_col, pred_col=PredictionKeys.PREDICTION.value, prediction_percentiles=None, title="", test_actual_df=None, is_visible=True, figsize=None, path=None, fontsize=None, ...
36e0fe88c664df1b93a7d96f217d4d2c94b96ad2
3,646,745
def CheckTreeIsOpen(input_api, output_api, url, closed, url_text): """Similar to the one in presubmit_canned_checks except it shows an helpful status text instead. """ assert(input_api.is_committing) try: connection = input_api.urllib2.urlopen(url) status = connection.read() connection.close() ...
540dd0ceb9c305907b0439b678a6444ca24c3f76
3,646,746
def tnr_ecma_st(signal, fs, prominence=True): """Computation of tone-to-noise ration according to ECMA-74, annex D.9 for a stationary signal. The T-TNR value is calculated according to ECMA-TR/108 Parameters ---------- signal :numpy.array A stationary signal in [Pa]. fs : intege...
4dcb740899de5a9411fddb8ed41b0b1628a438f4
3,646,747
def pop_legacy_palette(kwds, *color_defaults): """ Older animations in BPA and other areas use all sorts of different names for what we are now representing with palettes. This function mutates a kwds dictionary to remove these legacy fields and extract a palette from it, which it returns. """ ...
438ff6bb0f1300c614c724535d2215b2419fbb84
3,646,748
def trace_dot(X, Y): """Trace of np.dot(X, Y.T). Parameters ---------- X : array-like First matrix Y : array-like Second matrix """ return np.dot(X.ravel(), Y.ravel())
9c8d601144507cdbfb2d738af61a0016ea808d4a
3,646,749
import gc from datetime import datetime async def handle_waste_view(ack, body, client, view): """Process input from waste form""" logger.info("Processing waste input...") logger.info(body) raw_leaders = view['state']['values']['input_a']['leader_names']['selected_options'] leader_list = [" - " + n...
101b85b947cc148176f2f4d067cb73c0386b56cd
3,646,750
def random_superposition(dim: int) -> np.ndarray: """ Args: dim: Specified size returns a 2^dim length array. Returns: Normalized random array. """ state_vector = np.random.standard_normal(dim).astype(complex) state_vector += 1j * np.random.normal(dim) state_vector /= np.lina...
f33867247a64c09571fcfc29c10e45e8e9921271
3,646,751
def predict(dag_model: Dag, test_data: Tensor) -> MultitaskMultivariateNormal: """ Can use this little helper function to predict from a Dag without wrapping it in a DagGPyTorchModel. """ dag_model.eval() with no_grad(), fast_pred_var(): return dag_model(test_data)
d4c0e2d48e2edf3f4e2b07b26024d92390efe4dc
3,646,752
def edit_skill(): """Edit a skill entry in the skills table for a certain user. """ id = request.form['id'] skill_level = request.form['skill_level'] skills.update({'skill_level': skill_level}, id=id) return good_json_response('success')
9b314aa51f990e1bbbd6bf75874e410e937fa595
3,646,753
def is_catalogue_link(link): """check whether the specified link points to a catalogue""" return link['type'] == 'application/atom+xml' and 'rel' not in link
bc6e2e7f5c34f6ea198036cf1404fef8f7e7b214
3,646,754
def morlet_window(width: int, sigma: float) -> np.ndarray: """ Unadjusted Morlet window function. Parameters ---------- width : integer (positive power of 2) Window width to use - power of two as window of two corresponds to Nyquist rate. sigma : float Corresponds to the freque...
2f0d6ff644a078b50bb510835a9bb2d2028ea143
3,646,755
def tfidfvec(): """ 中文特征值化 :return: None """ c1, c2, c3 = cutword() print(c1, c2, c3) tf = TfidfVectorizer() data = tf.fit_transform([c1, c2, c3]) print(tf.get_feature_names()) print(data.toarray()) return None
1a0fe0e4a28e6d963f49156476ed720df492718b
3,646,756
import http def resolve_guid(guid, suffix=None): """Resolve GUID to corresponding URL and return result of appropriate view function. This effectively yields a redirect without changing the displayed URL of the page. :param guid: GUID value (not the object) :param suffix: String to append to GUID...
85a422f1c5709a44050595be4bf91ce1b937c0ef
3,646,757
from typing import Any def _is_array(obj: Any) -> bool: """Whether the object is a numpy array.""" return isinstance(obj, np.ndarray)
4852e045fcef142c23a9370efbe3b5ffe7a9f8a3
3,646,758
def has_ao_1e_int_overlap(trexio_file) -> bool: """Check that ao_1e_int_overlap variable exists in the TREXIO file. Parameter is a ~TREXIO File~ object that has been created by a call to ~open~ function. Returns: True if the variable exists, False otherwise Raises: - Exception from ...
53b5ec13ff7c32af5692972d586921a4d5bc07ef
3,646,759
from typing import Sequence from typing import Set async def get_non_existent_ids(collection, id_list: Sequence[str]) -> Set[str]: """ Return the IDs that are in `id_list`, but don't exist in the specified `collection`. :param collection: the database collection to check :param id_list: a list of doc...
b13c61f4528c36a9d78a3687ce84c39158399142
3,646,760
def create_source_fc(header): """ Creates :class:`parser.file_configuration_t` instance, configured to contain path to C++ source file :param header: path to C++ source file :type header: str :rtype: :class:`parser.file_configuration_t` """ return file_configuration_t( data=he...
29cd1112b9f59091b286f5222e62e9bec309bd36
3,646,761
def StorageFlatten(cache_line_size, create_bound_attribute=False): """Flatten the multi-dimensional read/write to 1D. Parameters ---------- cache_line_size: int The size of CPU cache line. create_bound_attribute: Whether to create bound attributes. Returns ------- fp...
cb535450d3a503632f66e015555148d211f3e6f9
3,646,762
def wrap(node): """Stringify the parse tree node and wrap it in parentheses if it might be ambiguous. """ if isinstance(node, (IntNode, CallNode, SymbolNode)): return str(node) else: return "(" + str(node) + ")"
9ac5d9a7d5e6d6539231ba6897a44e2787d92809
3,646,763
def _ParseProjectNameMatch(project_name): """Process the passed project name and determine the best representation. Args: project_name: a string with the project name matched in a regex Returns: A minimal representation of the project name, None if no valid content. """ if not project_name: retu...
cb9f92a26c7157a5125fbdb5dd8badd7ffd23055
3,646,764
from typing import OrderedDict def assign_variables(assignment_expressions, df, locals_dict, df_alias=None, trace_rows=None): """ Evaluate a set of variable expressions from a spec in the context of a given data table. Expressions are evaluated using Python's eval function. Python expressions hav...
b8e28bae70eaa56b49537011d3fd3079f640ab76
3,646,765
import io import zipfile def getCharts(dmldata: bytearray) -> list: """Get DrawingML object from clipboard""" stream = io.BytesIO(dmldata) with zipfile.ZipFile(stream, "r") as z: with z.open("[Content_Types].xml") as f: tree = ET.fromstring(f.read()) part_names = [] for...
402bf7e45be03ccda31563c2fc10afe2d4d09077
3,646,766
def explore_validation_time_gap_threshold_segments(participant_list, time_gap_list = [100, 200, 300, 400, 500, 1000, 2000], prune_length = None, auto_partition_low_quality_segments = False): """Explores different threshiold values for the invalid time gaps in the Segments ...
bd88f292a00986212ae36e383c4bb4e3cd94067c
3,646,767
def convolve_design(X, hrf, opt=None): """convolve each column of a 2d design matrix with hrf Args: X ([2D design matrix]): time by cond, or list of onsets hrf ([1D hrf function]): hrf opt: if onset case, provides n_times and tr for interpolation Returns: [conv...
02f2473ff18a78759c87884cd0f7fc94db6e0e2d
3,646,768
from typing import List def relax_incr_dimensions(iet, **kwargs): """ Recast Iterations over IncrDimensions as ElementalFunctions; insert ElementalCalls to iterate over the "main" and "remainder" regions induced by the IncrDimensions. """ sregistry = kwargs['sregistry'] efuncs = [] ma...
0d7af62309d427c6477329ed6b7a5dccab390a51
3,646,769
def _get_lspci_name(line): """Reads and returns a 'name' from a line of `lspci` output.""" hush = line.split('[') return '['.join(hush[0:-1]).strip()
92910d0f4d9dce1689ed22a963932fb85d8e2677
3,646,770
def dumps_bytes(obj): """ Serialize ``obj`` to JSON formatted ``bytes``. """ b = dumps(obj) if isinstance(b, unicode): b = b.encode("ascii") return b
5ee94b2bd5a8bcd2f8586578e6d86084a030d93a
3,646,771
def get_child_right_position(position: int) -> int: """ heap helper function get the position of the right child of the current node >>> get_child_right_position(0) 2 """ return (2 * position) + 2
2a5128a89ac35fe846d296d6b92c608e50b80a45
3,646,772
from typing import List from typing import Dict def convert_paragraphs_to_s2orc(paragraphs: List, old_to_new: Dict) -> List[Dict]: """ Convert paragraphs into S2ORC format """ # TODO: temp code to process body text into S2ORC format. this includes getting rid of sub/superscript spans. # als...
922f6a238f63039e68b1a14342974d6b3d47ba8f
3,646,773
def get_feature_set_details(shape_file_path): """ This function gets the shape type of the shapefile and make a list of fields to be added to output summary table based on that shape type """ try: # Checking for geometry type feat_desc = arcpy.Describe(shape_file_path) arcpy.AddMes...
9c4eddd9963751d195f4165ecc862d2753bb2067
3,646,774
def get_label_parts(label): """returns the parts of an absolute label as a list""" return label[2:].replace(":", "/").split("/")
44998aad262f04fdb4da9e7d96d2a2b3afb27502
3,646,775
import argparse def get_args(): """get command-line arguments""" parser = argparse.ArgumentParser( description='Argparse Python script', formatter_class=argparse.ArgumentDefaultsHelpFormatter) parser.add_argument( '-c', '--cdhit', help='Output file from CD-HIT (clu...
d961b0a81bd0e6db9687927c8b23f8cba5a3cfce
3,646,776
import pandas import numpy def combined_spID(*species_identifiers): """Return a single column unique species identifier Creates a unique species identifier based on one or more columns of a data frame that represent the unique species ID. Args: species_identifiers: A tuple containing one or ...
d50abeccc6fb0235fd8a58dfadbd7c6bdb72825d
3,646,777
import copy def qr(A, prec=1e-10): """ computes a faster and economic qr decomposition similar to: http://www.iaa.ncku.edu.tw/~dychiang/lab/program/mohr3d/source/Jama%5CQRDecomposition.html """ m = len(A) if m <= 0: return [], A n = len(A[0]) Rdiag = [0] * n; QR = copy.deep...
fe1ffa20b5ad44a76837bd816ca07c3388ebcb4d
3,646,778
def split_range(r, n): """ Computes the indices of segments after splitting a range of r values into n segments. Parameters ---------- r : int Size of the range vector. n : int The number of splits. Returns ------- segments : list The list of lists of fi...
34f570933a5eb8772dc4b2e80936887280ff47a4
3,646,779
def is_connected_to_mongo(): """ Make sure user is connected to mongo; returns True if connected, False otherwise. Check below url to make sure you are looking for the right port. """ maxSevSelDelay = 1 # how long to spend looking for mongo try: # make sure this address is running ...
2bf28835ae192d41836f2335ce5c1e152b0e0838
3,646,780
def _fill_three_digit_hex_color_code(*, hex_color_code: str) -> str: """ Fill 3 digits hexadecimal color code until it becomes 6 digits. Parameters ---------- hex_color_code : str One digit hexadecimal color code (not including '#'). e.g., 'aaa', 'fff' Returns ------- f...
d91df947fcc5f0718bbd9b3b4f69f1ad68ebeff4
3,646,781
import re def normalize(text: str, convert_digits=True) -> str: """ Summary: Arguments: text [type:string] Returns: normalized text [type:string] """ # replacing all spaces,hyphens,... with white space space_pattern = ( r"[\xad\ufeff\u200e\u200d\u200b\x7f\u202a\...
43bddc9c78615ab4cc58a732c164ad81b6848dc1
3,646,782
def register_name_for(entity): """ gets the admin page register name for given entity class. it raises an error if the given entity does not have an admin page. :param type[pyrin.database.model.base.BaseEntity] entity: the entity class of a...
c43ab1a1e08058435c6680886d0e7c1dd81b1bef
3,646,783
def index(): """Show all the posts, most recent first.""" db = get_db() posts = db.execute( # "SELECT p.id, title, body, created, author_id, username" # " FROM post p" # " JOIN user u ON p.author_id = u.id" # " ORDER BY created DESC" "SELECT *, l.author_id as love_a...
b40a302ef1278f3fb0227c40db4764c22f5f0cb8
3,646,784
import requests def get_user_information(fbid, extra_fields=[]): """ Gets user basic information: first_name, last_name, gender, profile_pic, locale, timezone :usage: >>> # Set the user fbid you want the information >>> fbid = "<user fbid>" >>> # Call the function passing the fbid...
7765fec33fc70a67c3249e6417d0f75acba0ba2e
3,646,785
import re def parseTeam(teamString): """Parse strings for data from official Pokemon Showdown format. Keyword arguemnts:\n teamString -- a team string, copied from pokepaste or pokemon showdown """ pokemonList = teamString.split('\n\n') teamList = [] #print(pokemonList) for pokemon i...
70680cf1eca50a4738b8afc7ab12fcd86b48d01d
3,646,786
import os def url_scheme(url, path): """Treat local URLs as 'file://'.""" if not urlparse(url).scheme: url = "file://" + os.path.join(path, url) return url
dba51b0c0a3fbbbf32186a8820cfbd762485a3af
3,646,787
def mix_style(style_codes, content_codes, num_layers=1, mix_layers=None, is_style_layerwise=True, is_content_layerwise=True): """Mixes styles from style codes to those of content codes. Each style code or content code consists of `num_layers` co...
377a0638d84ed084a91eb6dfb20302e56ab85647
3,646,788
import logging def train_many_models(extractor, param_grid, data_dir, output_dir=None, **kwargs): """ Train many extractor models, then for the best-scoring model, write train/test block-level classification performance as well as the model itself to disk in ``output_dir``. ...
783cb5a524a58023d79e88eff4b46a0e713ca8cc
3,646,789
from datetime import datetime import sys import os def analyze_iw(aoi, doi, dictionary, size, aoiId): """ Function that pre-processes sentinel-2 imagery and runs the LCC change detection algorithm Parameters: aoi(ee.Feature): area of interest with property 'landcover' doi(ee.Date): da...
4883daea5b3e05d4af5dafcb257c8555ae361a9a
3,646,790
import collections def _build_client_update(model: model_lib.Model, use_experimental_simulation_loop: bool = False): """Creates client update logic for FedSGD. Args: model: A `tff.learning.Model` used to compute gradients. use_experimental_simulation_loop: Controls the reduce loo...
8ba68ebba2c6520e9c7a89975d16dc20debf52eb
3,646,791
import ipaddress def ipv4_addr_check(): """Prompt user for IPv4 address, then validate. Re-prompt if invalid.""" while True: try: return ipaddress.IPv4Address(input('Enter valid IPv4 address: ')) except ValueError: print('Bad value, try again.') raise
e85681cdcedb605f47240b27e8e2bce077a39273
3,646,792
import os import imp def getPlugins(): """ List the plugins located in the plugins folder. """ plugins = [] pluginList = os.listdir(PluginFolder) for pluginName in pluginList: location = os.path.join(PluginFolder, pluginName) if not os.path.isdir(location) or not MainModule + ...
d88ca8c19a35ddf49fda37e41e1f8f3b01cf9974
3,646,793
def energybalance_erg(ratio,crew,erg,w0=4.3801,dt=0.03,doplot=1,doprint=0,theconst=1.0): """ calculates one stroke with ratio as input, using force profile in time domain """ # w0 = initial flywheel angular velo # initialising output values dv = 100. vavg = 0.0 vend = 0.0 power = 0.0 #...
a742b88394f194afee3ef89bc4e878027fcac8b5
3,646,794
import os import subprocess def get_gpu_count(): """get avaliable gpu count Returns: gpu_count: int """ gpu_count = 0 env_cuda_devices = os.environ.get('CUDA_VISIBLE_DEVICES', None) if env_cuda_devices is not None: assert isinstance(env_cuda_devices, str) try: ...
fad511d32419daa1f2d9ac569ebd9201a9aa1de9
3,646,795
def get_EXP3_policy(Q, eta, G_previous): """ Obtain EXP-3 policy based on a given Q-function. Also, return updated values of G, to be used in future calls to this function. Inputs: 1) Q: a num_states x num_actions matrix, in which Q[s][a] specifies the Q-function in state s...
80e886142fff398801e4f767ed09392d7f8b398c
3,646,796
def table_content(db, table): """ return a 2 dimentioanl array cont-aining all table values ======================================================== >>> table_content("sys", "host_ip") [[1, 2, 3], [2, 3, 4], [3, 4, 5]] ======================================================== """ ...
51b973f442131a157aa13ae0c0ed9f1d07a4115d
3,646,797
def process_sort_params(sort_keys, sort_dirs, default_keys=None, default_dir='asc'): """Process the sort parameters to include default keys. Creates a list of sort keys and a list of sort directions. Adds the default keys to the end of the list if they are not already included. ...
1f11f5d7d4fbe5c1864ace120c1dbde7b6023acb
3,646,798
def namify(idx): """ Helper function that pads a given file number and return it as per the dataset image name format. """ len_data = 6 #Ilsvr images are in the form of 000000.JPEG len_ = len(str(idx)) need = len_data - len_ assert len_data >= len_, "Error! Image idx being fetched is incorr...
069ff7a297f944e9e0e51e5e100276a54fa51618
3,646,799