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def validate_dtype(dtype_in): """ Input is an argument represention one, or more datatypes. Per column, number of columns have to match number of columns in csv file: dtype = [pa.int32(), pa.int32(), pa.int32(), pa.int32()] dtype = {'__columns__': [pa.int32(), pa.int32(), pa.int32(), pa.int32()]} ...
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def get_secret(name): """Load a secret from file or env Either provide ``{name}_FILE`` or ``{name}`` in the environment to configure the value for ``{name}``. """ try: with open(os.environ[name + "_FILE"]) as secret_file: return secret_file.read().strip() except (FileNotFoun...
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def cache( cache_class: Callable[[], base_cache.BaseCache[T]], serializer: Callable[[], cache_serializer.CacheSerializer], conditional: Callable[[List[Any], Dict[str, Any]], bool] = _always_true): """ cache ===== parameters: cache_class (base_cache.BaseCache) con...
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def words2chars(images, labels, gaplines): """ Transform word images with gaplines into individual chars """ # Total number of chars length = sum([len(l) for l in labels]) imgs = np.empty(length, dtype=object) newLabels = [] height = images[0].shape[0] idx = 0; for i, gaps...
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def general_barplot_with_error(means, stds): """ Barplot, meant for fixation position and entropy. x: fixation position. y: mean (and stdev) means: dictionary, with x labels as keys stds: dictionary, with x labels as keys """ fig,ax = plt.subplots() plt.errorbar(means.keys(), means.values(),...
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def show_all_archives(): """Displays meta data for all archives.""" archives = Archive.select() template = "{: <32} {: <64} {: <64} {: <32} {: <32}" header = [ "Name", "Source Path", "Destination Path", "Key Pair Name", "Timestamp", ] print(template.form...
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def add_custom_subparser(subparsers): """ Add subparser for customized stock picks """ custom = subparsers.add_parser( "custom", help="Analyze set of user defined pages" ) custom.add_argument( "pages", nargs="*", help="Symbol:Wikipage to analyze, eg: AAPL:Apple_...
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def create_spark_session(spark_jars: str) -> SparkSession: """ Create Spark session :param spark_jars: Hadoop-AWS JARs :return: SparkSession """ spark = SparkSession \ .builder \ .config("spark.jars.packages", spark_jars) \ .appName("Sparkify ETL") \ .getOrCreate(...
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def make_expired(request, pk): """ 将号码状态改为过号 """ try: reg = Registration.objects.get(pk=pk) except Registration.DoesNotExist: return Response('registration not found', status=status.HTTP_404_NOT_FOUND) data = { 'status': REGISTRATION_STATUS_EXPIRED } serializer = ...
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def run_optimization(mesh, target_evals, out_path, params=OptimizationParams()): """Run the optimization.""" # Create the output directories os.makedirs(f"{out_path}/ply", exist_ok=True) os.makedirs(f"{out_path}/txt", exist_ok=True) # Unpack the mesh [ Xopt, TRIV, n, ...
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def register(): """Registers all signature key managers in the Python registry.""" tink_bindings.register() for key_type_identifier in ('EcdsaPrivateKey', 'Ed25519PrivateKey', 'RsaSsaPssPrivateKey', 'RsaSsaPkcs1PrivateKey',): type_url = 'type.googleapis.com/google.crypto.tink.' ...
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def cmd_add(opts): """Add one or more existing Docker containers to a Blockade group """ config = load_config(opts.config) b = get_blockade(config, opts) b.add_container(opts.containers)
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def word2vec_similarity(segmented_topics, accumulator, with_std=False, with_support=False): """For each topic segmentation, compute average cosine similarity using a :class:`~gensim.topic_coherence.text_analysis.WordVectorsAccumulator`. Parameters ---------- segmented_topics : list of lists o...
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def remote(self, privilege, grant_target_name, user_name, node=None): """Check that user is only able to to create a table from a remote source when they have the necessary privilege. """ exitcode, message = errors.not_enough_privileges(name=user_name) if node is None: node = self.context.node ...
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def test_vecenv_terminal_obs(vec_env_class, vec_env_wrapper): """Test that 'terminal_observation' gets added to info dict upon termination.""" step_nums = [i + 5 for i in range(N_ENVS)] vec_env = vec_env_class([functools.partial(StepEnv, n) for n in step_nums]) if vec_env_wrapper is not None: ...
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def addGroupsToKey(server, activation_key, groups): """ Add server groups to a activation key CLI Example: .. code-block:: bash salt-run spacewalk.addGroupsToKey spacewalk01.domain.com 1-my-key '[group1, group2]' """ try: client, key = _get_session(server) except Exceptio...
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def get_user_for_delete(): """Query for Users table.""" delete_user = Users.query \ .get(DELETE_USER_ID) return delete_user
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def station_code_from_duids(duids: List[str]) -> Optional[str]: """ Derives a station code from a list of duids ex. BARRON1,BARRON2 => BARRON OSBAG,OSBAG => OSBAG """ if type(duids) is not list: return None if not duids: return None if len(duids) ...
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def act_mmp_3d(out_mmps, target_id): """Function to attribute 3D coordinates to the activity only molecule. Uses MMFF and maximises shape overlap with existing fragment. Takes a list of mmps and a Target Returns None""" print "Generating 3D conformations" # First of all make sure the protein ex...
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async def count_to(number): """ counts to n in async manner""" async for i in some_iter_func(number): print(i)
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def erosion(image, selem, out=None, shift_x=False, shift_y=False): """Return greyscale morphological erosion of an image. Morphological erosion sets a pixel at (i,j) to the minimum over all pixels in the neighborhood centered at (i,j). Erosion shrinks bright regions and enlarges dark regions. Para...
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def NE(x=None, y=None): """ Compares two values and returns: true when the values are not equivalent. false when the values are equivalent. See https://docs.mongodb.com/manual/reference/operator/aggregation/ne/ for more details :param x: first value or expression :param y: second...
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def TCPs_from_tc(type_constraint): """ Take type_constraint(type_param_str, allowed_type_strs) and return list of TypeConstraintParam """ tys = type_constraint.allowed_type_strs # Get all ONNX types tys = set( [onnxType_to_Type_with_mangler(ty) for ty in tys] ) # Convert to Knossos and...
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def test_phone_search(yelp_fusion, kwargs, exception_raised): """ test GET /businesses/search/phone Args: yelp_fusion (yelp.YelpFusion): a YelpFusion object """ if exception_raised: with pytest.raises(RuntimeError): yelp_fusion.phone_search(**kwargs) else: as...
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def builtin_unshelve(self, context, looping=False): """Modify the stack: ( a ... -- ... a ).""" a = context.dequeue() context.push(a)
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def invoke_windowsError(): """ Raised when a Windows-specific error occurs or when the error number does not correspond to an errno value. (Only available on Windows systems) """ try: a = open("unexistant.txt", 'r') except WindowsError as e: print("WindowsError encountered") ...
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def writeJavascriptLibrary(html): """Write a block of Javascript code.""" html.write("""<!-- Javascript functions to hide/display folder content --> <script type="text/javascript"> <!-- to hide script contents from old browsers // Pick loggraph // Hides all loggraphs and then shows just the one of // interest fu...
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def _randomde(allgenes, allfolds, size): """Randomly select genes from the allgenes array and fold changes from the allfolds array. Size argument indicates how many to draw. Parameters ---------- allgenes : numpy array numpy array with all the genes expressed in ...
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def add_disc_rew(seg, gamma): """ Discount the reward of the generated batch of trajectories. """ new = np.append(seg['new'], 1) rew = seg['rew'] n_ep = len(seg['ep_rets']) n_samp = len(rew) seg['ep_disc_ret'] = ep_disc_ret = np.empty(n_ep, 'float32') seg['disc_rew'] = disc_rew...
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def test_md041_good_heading_top_level_setext(): """ Test to make sure we get the expected behavior after scanning a good file from the test/resources/rules/md004 directory that has consistent asterisk usage on a single level list. """ # Arrange scanner = MarkdownScanner() supplied_argum...
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def retrieve(resource_url, filename=None, verbose=True): """ Copy the given resource to a local file. If no filename is specified, then use the URL's filename. If there is already a file named C{filename}, then raise a C{ValueError}. @type resource_url: C{str} @param resource_url: A URL s...
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def XCor(spectra, mask_l, mask_h, mask_w, vel, lbary_ltopo, vel_width=30,\ vel_step=0.3, start_order=0, spec_order=9,iv_order=10,sn_order=8,max_vel_rough=300.): """ Calculates the cross-correlation function for a Coralie Spectra """ # speed of light, km/s c = 2.99792458E5 # loop over orders norder...
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def marks_details(request, pk): """ Display details for a given Mark """ # Check permission if not has_access(request): raise PermissionDenied # Get context context = get_base_context(request) # Get object mark = get_object_or_404(Mark, pk=pk) mark.category_clean = mar...
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def clean_text(text): """ text: a string return: modified initial string """ text = BeautifulSoup(text, "lxml").text # HTML decoding text = text.lower() # lowercase text # replace REPLACE_BY_SPACE_RE symbols by space in text text = REPLACE_BY_SPACE_RE.sub(' ', text) # dele...
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def get_input_device(config): """ Create the InputDevice instance and handle errors """ dev_path = config['flirc_device_path'] logging.debug('get_input_device() dev_path: %s', dev_path) try: input_device = InputDevice(dev_path) return input_device except FileNotFoundError as excepti...
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def _simpsons_interaction(data, groups): """ Calculation of Simpson's Interaction index Parameters ---------- data : a pandas DataFrame groups : list of strings. The variables names in data of the groups of interest of the analysis. Returns ------- statistic ...
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def find_includes(armnn_include_env: str = INCLUDE_ENV_NAME): """Searches for ArmNN includes. Args: armnn_include_env(str): Environmental variable to use as path. Returns: list: A list of paths to include. """ armnn_include_path = os.getenv(armnn_include_env) if armnn_include_p...
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def read_missing_oids(oid_lines): """ Parse lines into oids. >>> list(read_missing_oids([ ... "!!! Users 0 ?", "POSKeyError: foo", ... "!!! Users 0 ?", ... "!!! Users 1 ?", ... "bad xref name, 1", "bad db", ])) [0, 1] """ result = OidSet() for line in oid_lines: ...
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def run(target='192.168.1.1', ports=[21,22,23,25,80,110,111,135,139,443,445,554,993,995,1433,1434,3306,3389,8000,8008,8080,8888]): """ Run a portscan against a target hostname/IP address `Optional` :param str target: Valid IPv4 address :param list ports: Port numbers to scan on target host :ret...
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def go(): """サンプルを実行します.""" obj = Sample() obj.exec()
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def check_factorial_validity(token, value): """ Checks whether the factorial call is in limit. Parameters ---------- token : ``Token`` The parent token. value : `int` or `float` The value to use factorial on. Raises ------ EvaluationError - Factorial...
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def subsequent_mask(size: int): """ Mask out subsequent positions (to prevent attending to future positions) Transformer helper function. :param size: size of mask (2nd and 3rd dim) :return: Tensor with 0s and 1s of shape (1, size, size) """ mask = np.triu(np.ones((1, size, size)), k=1).ast...
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def _get_dist_class( policy: Policy, config: TrainerConfigDict, action_space: gym.spaces.Space ) -> Type[TorchDistributionWrapper]: """Helper function to return a dist class based on config and action space. Args: policy (Policy): The policy for which to return the action dist class. ...
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def timeexec(fct, number, repeat): """ Measures the time for a given expression. :param fct: function to measure (as a string) :param number: number of time to run the expression (and then divide by this number to get an average) :param repeat: number of times to repeat the computation ...
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def is_bst(root): """ checks if binary tree is binary search tree """ def is_bst_util(root, min_value, max_value): """ binary search tree check utility function """ if root is None: return True if (root.data >= min_value and root.data < max_value and is_bst_u...
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def regexify(w, tags): """Convert a single component of a decomposition rule from Weizenbaum notation to regex. Parameters ---------- w : str Component of a decomposition rule. tags : dict Tags to consider when converting to regex. Returns ------- w : str Co...
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def test_handling_unexpected_exception(testdata_dir: pathlib.Path, monkeypatch: MonkeyPatch) -> None: """Test whether a bad element string correctly errors.""" element_str = 'catalog' full_path = testdata_dir / 'json/minimal_catalog.json' command_str = f'trestle partial-object-validate -f {str(full_path...
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def test_subgrid_error(): """Capture errors in the subgrid specification""" with pytest.raises(SystemExit): # j0 outside grid g = Grid(filename=grid_file, subgrid=(20, 150, 30, 222)) with pytest.raises(SystemExit): # i0 > i1, i0 g = Grid(filename=grid_file, subgrid=(50, 20, 30, 170))
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def row_dot_product(a: np.ndarray, b: np.ndarray) -> np.ndarray: """ Returns a vectorized dot product between the rows of a and b :param a: An array of shape (N, M) or (M, ) (or a shape that can be broadcast to (N, M)) :param b: An array of shape (N, M) or (M, ) (or a shape that can be broadcas...
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def pmg_pickle_dump(obj, filobj, **kwargs): """ Dump an object to a pickle file using PmgPickler. Args: obj : Object to dump. fileobj: File-like object \\*\\*kwargs: Any of the keyword arguments supported by PmgPickler """ return PmgPickler(filobj, **kwargs).dump(obj)
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def condition_header(header, needed_keys=None): """Return a dictionary of all `needed_keys` from `header` after passing their values through the CRDS value conditioner. """ header = { key.upper():val for (key, val) in header.items() } if not needed_keys: needed_keys = header.keys() else:...
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def check_is_proba(entry: Union[float, int], name: str = None): """Check whether the number is non-negative and less than or equal to 1.""" if name is None: name = 'Probabilities' if type(entry) not in [float, int]: raise TypeError('{} must be floats (or ints if 0 or 1).'.format(name)) i...
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def get_generic_path_information(paths, stat_prefix=""): """ Get an OrderedDict with a bunch of statistic names and values. """ statistics = OrderedDict() returns = [sum(path["rewards"]) for path in paths] # rewards = np.vstack([path["rewards"] for path in paths]) rewards = np.concatenate([p...
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def pad_images(images, nlayers): """ In Unet, every layer the dimension gets divided by 2 in the encoder path. Therefore the image size should be divisible by 2^nlayers. """ import math import numpy as np divisor = 2**nlayers nlayers, x, y = images.shape # essentially setting nlayers to ...
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def remove_measurements(measurements, model_dict, params=None): """Remove measurements from a model specification. If provided, a params DataFrame is also reduced correspondingly. Args: measurements (str or list): Name(s) of the measurement(s) to remove. model_dict (dict): The model specif...
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def make_output(platform, output): """Return libraries list""" libraries = parse_libs() # OS libs separate _ = {"win32": ";", "linux": ":", "darwin": ":"} out_lib = str() # Generate libraries list for lib in libraries: out_lib = out_lib + "$MC_DIR/libraries/{0}".format(lib) + _[p...
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def _output(command: Sequence[str]) -> None: """Helper function. Prints start/finish and runs the command inbetween.""" print(f'========== {command[0]} starting ==========') subprocess.run(command) print(f'========== {command[0]} finished ==========')
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def good2Go(SC, L, CC, STR): """ Check, if all input is correct and runnable """ if SC == 1 and L == 1 and CC == 1 and STR == 1: return True else: print(SC, L, CC, STR) return False
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def __validate_tweet_name(tweet_name: str, error_msg: str) -> str: """Validate the tweet's name. Parameters ---------- tweet_name : str Tweet's name. error_msg : str Error message to display for an invalid name. Returns ------- str Validated tweet name. Rai...
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def convert_event(obj): """ :type obj: :class:`sir.schema.modelext.CustomEvent` """ event = models.event(id=obj.gid, name=obj.name) if obj.comment: event.set_disambiguation(obj.comment) if obj.type is not None: event.set_type(obj.type.name) event.set_type_id(obj.type.gi...
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def get_pr_review_status(pr: PullRequestDetails, per_page: int = 100) -> Any: """ References: https://developer.github.com/v3/pulls/reviews/#list-reviews-on-a-pull-request """ url = (f"https://api.github.com/repos/{pr.repo.organization}/{pr.repo.name}" f"/pulls/{pr.pull_id}/reviews" ...
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def make_sph_model(filename): """reads a spherical model file text file and generates interpolated values Args: filename: Returns: model: """ M = np.loadtxt(filename, dtype={'names': ('rcurve', 'potcurve', 'dpotcurve'),'formats': ('f4', 'f4', 'f4')},skiprows=1) model = ...
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def list_dir(filepath): """List the files in the directory""" return sorted(list(map(lambda x: os.path.join(filepath, x), os.listdir(filepath))))
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def minimum(x, y): """ Returns the min of x and y (i.e. x < y ? x : y) element-wise. Parameters ---------- x : tensor. Must be one of the following types: bfloat16, half, float32, float64, int32, int64. y : A Tensor. Must have the same type as x. name : str A name fo...
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def seconds_to_timestamp(seconds): """ Convert from seconds to a timestamp """ minutes, seconds = divmod(float(seconds), 60) hours, minutes = divmod(minutes, 60) return "%02d:%02d:%06.3f" % (hours, minutes, seconds)
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def query(querystring: str, db: tsdb.Database, **kwargs): """ Perform query *querystring* on the testsuite *ts*. Note: currently only 'select' queries are supported. Args: querystring (str): TSQL query string ts (:class:`delphin.itsdb.TestSuite`): testsuite to query...
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def rename_SI_cols(dataset, removenans=True): """ names columns of Spectro Inlets data like EC-Lab and PyExpLabSys+cinfdata name them. """ if isinstance(dataset, dict): print("WARNGING!!! The use of dataset dictionaries is no longer suported!!!") data = dataset else: data = d...
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def TTF_SizeUTF8(font, text, w, h): """Calculates the size of a UTF8-encoded string rendered with a given font. See :func:`TTF_SizeText` for more info. Args: font (:obj:`TTF_Font`): The font object to use. text (bytes): A UTF8-encoded bytestring of text for which the rendered s...
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def get_mse(y_true, y_hat): """ Return the mean squared error between the ground truth and the prediction :param y_true: ground truth :param y_hat: prediction :return: mean squared error """ return np.mean(np.square(y_true - y_hat))
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def generate_v2_token(username, version, client_ip, issued_at_timestamp, email=''): """Creates the JSON Web Token with a new schema :Returns: String :param username: The name of person who the token identifies :type username: String :param version: The version number for the token :type versi...
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def choose(n, k): """return n choose k resilient (though not immune) to integer overflow""" if n == 1: # optimize by far most-common case return 1 return fact_div(n, max(k, n - k)) / math.factorial(min(k, n - k))
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def part_one(puzzle_input: List[str]) -> int: """Find the highest seat ID on the plane""" return max(boarding_pass_to_seat_id(line) for line in puzzle_input)
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def readbit(val, bitidx): """ Direct word value """ return int((val & (1<<bitidx))!=0)
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def main(): """ pred_dict : dict. {'img1.png': [array, array], ...} array: [x1, y1, x2, y2, conf] bordered, borderless 순 gt_dict: dict. {{'img1.png': [array, array], ...}} array: [x1, y1, x2, y2] """ with open(pred_pickle, 'rb') as f: pred_dict = pickle.load(f) with open(gt_pickle, 'rb') as f: gt...
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def mdtf_rename_img(varlist,conv,img_dir): """Rename figure files to use variable names from settings file, not conventions.""" for f in img_dir.iterdir(): f_name = str(f.name) if not f_name.startswith("."): for pod_var in varlist: standard_name = varlist[pod_var]...
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def test_immediate_datafuture(): """Test DataFuture string representation, for AppFutures launched with parent """ import time fu = echo_slow_message("Hello world", sleep=1, outputs=["hello.1.txt"]) d_fu = fu.outputs[0] time.sleep(0.1) state_2 = d_fu.__str__() print("State_2 : ", state...
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def matrix_bombing_plan(m): """ This method calculates sum of the matrix by trying every possible position of the bomb and returns a dictionary. Dictionary's keys are the positions of the bomb and values are the sums of the matrix after the damage """ matrix = deepcopy(m) rows = len(m) ...
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def coord_to_gtp(coord, board_size): """ From 1d coord (0 for position 0,0 on the board) to A1 """ if coord == board_size ** 2: return "pass" return "{}{}".format("ABCDEFGHJKLMNOPQRSTYVWYZ"[int(coord % board_size)],\ int(board_size - coord // board_size))
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def test_alternative_clusting_method(ClusterModel): """ Test that users can supply alternative clustering method as dep injection """ def clusterer(X: np.ndarray, k: int, another_test_arg): """ Function to wrap a sklearn model as a clusterer for OptimalK First two arguments are ...
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def load_dataset(spfile, twfile): """Loads dataset given the span file and the tweets file Arguments: spfile {string} -- path to span file twfile {string} -- path to tweets file Returns: dict -- dictionary of tweet-id to Tweet object """ tw_int_map = {} # for filen in os....
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def nameof(var, *more_vars, # *, keyword only argument, supported with python3.8+ frame: int = 1, vars_only: bool = True) -> Union[str, Tuple[str]]: """Get the names of the variables passed in Examples: >>> a = 1 >>> nameof(a) # 'a' >>> b = 2 >>...
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def ui_save_newspaper_text_to_disk(dir_name, newspaper_text_by_date): """Saves data to disk at current working directory and prints UI messages. Makes new directory named by the `dir_name` parameter, adding a suffix to avoid naming collisions. Does not merge issues from current call into an equally nam...
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def cache_get_filepath(key): """Returns cache path.""" return os.path.join(settings.CACHE_PATH, key)
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def scorer(func): """This function is a decorator for a scoring function. This is hack a to get around self being passed as the first argument to the scoring function.""" def wrapped(a, b=None): if b is not None: return func(b) return func(a) return wrapped
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def print_stats(yards): """ This function prints the final stats after a skier has crashed. """ print print "You skied a total of", yards, "yards!" #print "Want to take another shot?" print return 0
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def _calculate_risk_reduction(module): """ Function to calculate the risk reduction due to testing. The algorithms used are based on the methodology presented in RL-TR-92-52, "SOFTWARE RELIABILITY, MEASUREMENT, AND TESTING Guidebook for Software Reliability Measurement and Testing." Rather than at...
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def run_metarl(env, test_env, seed, log_dir): """Create metarl model and training.""" deterministic.set_seed(seed) snapshot_config = SnapshotConfig(snapshot_dir=log_dir, snapshot_mode='gap', snapshot_gap=10) runner = LocalRunner(...
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def get_default_mutation_op(dom): """ Returns the default mutation operator for the domain. """ if dom.get_type() == 'euclidean': return lambda x: euclidean_gauss_mutation(x, dom.bounds) elif dom.get_type() == 'integral': return lambda x: integral_gauss_mutation(x, dom.bounds) elif dom.get_type() == 'di...
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def chunked(src, size, count=None, **kw): """Returns a list of *count* chunks, each with *size* elements, generated from iterable *src*. If *src* is not evenly divisible by *size*, the final chunk will have fewer than *size* elements. Provide the *fill* keyword argument to provide a pad value and en...
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def doc_to_schema_fields(doc, schema_file_name='_schema.yaml'): """Parse a doc to retrieve the schema file.""" return doc_to_schema(doc, schema_file_name=schema_file_name)[ 'schema_fields']
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def cluster(df: pd.DataFrame, k: int, knn: int = 10, m: int = 30, alpha: float = 2.0, verbose0: bool = False, verbose1: bool = False, verbose2: bool = True, plot: bool = True) -> Tuple[pd.DataFrame, OrderedDict]: """ Chameleon clustering: build the K-NN graph, partition it into m clusters :para...
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def get_CIFAR10_data(num_training=49000, num_validation=1000, num_test=1000): """ Load the CIFAR-10 dataset from disk and perform preprocessing to prepare it for the two-layer neural net classifier. These are the same steps as we used for the SVM, but condensed to a single function. """ ...
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def test_operation_populated(petstore_expanded_spec): """ Tests that operations are populated as expected """ op = petstore_expanded_spec.paths["/pets"].get # check description and metadata populated correctly assert op.operationId == "findPets" assert op.description.startswith("Returns all...
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def timeframe_int_to_str(timeframe: int) -> str: """ Convert timeframe from integer to string :param timeframe: minutes per candle (240) :return: string representation for API (4h) """ if timeframe < 60: return f"{timeframe}m" elif timeframe < 1440: return f"{int(timeframe / ...
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def FIT(individual): """Sphere test objective function. F(x) = sum_{i=1}^d xi^2 d=1,2,3,... Range: [-100,100] Minima: 0 """ y=sum(x**2 for x in individual) return y
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def update_range(value): """ For user selections, return the relevant range """ global df min, max = df.timestamp.iloc[value[0]], df.timestamp.iloc[value[-1]] return 'timestamp slider: {} | {}'.format(min, max)
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def project_users_add(ctx, user, **kwargs): """ Adds new user to the project. """ client = api.ProjectUser( project=ctx.obj['project'], config=ctx.obj['config'], user=user, **kwargs ) client.save() click.echo("User '{}' added to the project.".format(user.emai...
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def wrapper_func_easy(quantity = None, food = None, express = None, is_awesome = None): """ wrapper_func_easy: Sample wrapper function. """ dict_args = {} dict_args['quantity'] = 42 if quantity is None else quantity if food is not None: dict_args['food'] = food ...
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def simplify(tile): """ :param tile: 34 tile format :return: tile: 0-8 presentation """ return tile - 9 * (tile // 9)
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def vep(dataset, config, block_size=1000, name='vep', csq=False) -> MatrixTable: """Annotate variants with VEP. .. include:: ../_templates/req_tvariant.rst :func:`.vep` runs `Variant Effect Predictor <http://www.ensembl.org/info/docs/tools/vep/index.html>`__ with the `LOFTEE plugin <https://github...
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