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koordinates/python-client | koordinates/sets.py | SetManager.set_metadata | def set_metadata(self, set_id, fp):
"""
Set the XML metadata on a set.
:param file fp: file-like object to read the XML metadata from.
"""
base_url = self.client.get_url('SET', 'GET', 'single', {'id': set_id})
self._metadata.set(base_url, fp) | python | def set_metadata(self, set_id, fp):
"""
Set the XML metadata on a set.
:param file fp: file-like object to read the XML metadata from.
"""
base_url = self.client.get_url('SET', 'GET', 'single', {'id': set_id})
self._metadata.set(base_url, fp) | [
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koordinates/python-client | koordinates/sets.py | Set.set_metadata | def set_metadata(self, fp):
"""
Set the XML metadata on a set.
:param file fp: file-like object to read the XML metadata from.
"""
base_url = self._client.get_url('SET', 'GET', 'single', {'id': self.id})
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Set the XML metadata on a set.
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koordinates/python-client | koordinates/metadata.py | MetadataManager.set | def set(self, parent_url, fp):
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Returns the XML metadata for this source, converted to the requested format.
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koordinates/python-client | koordinates/metadata.py | Metadata.get_formats | def get_formats(self):
""" Return the available format names for this metadata """
formats = []
for key in (self.FORMAT_DC, self.FORMAT_FGDC, self.FORMAT_ISO):
if hasattr(self, key):
formats.append(key)
return formats | python | def get_formats(self):
""" Return the available format names for this metadata """
formats = []
for key in (self.FORMAT_DC, self.FORMAT_FGDC, self.FORMAT_ISO):
if hasattr(self, key):
formats.append(key)
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koordinates/python-client | koordinates/utils.py | is_bound | def is_bound(method):
"""
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2. a ``url`` attribute
2. a manager set
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michaelaye/pyciss | pyciss/opusapi.py | OPUS.query_image_id | def query_image_id(self, image_id):
"""Query OPUS via the image_id.
This is a query using the 'primaryfilespec' field of the OPUS database.
It returns a list of URLS into the `obsids` attribute.
This example queries for an image of Titan:
>>> opus = opusapi.OPUS()
>>> ... | python | def query_image_id(self, image_id):
"""Query OPUS via the image_id.
This is a query using the 'primaryfilespec' field of the OPUS database.
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michaelaye/pyciss | pyciss/opusapi.py | OPUS.create_request_with_query | def create_request_with_query(self, kind, query, size="thumb", fmt="json"):
"""api/data.[fmt], api/images/[size].[fmt] api/files.[fmt]
kind = ['data', 'images', 'files']
"""
if kind == "data" or kind == "files":
url = "{}/{}.{}".format(base_url, kind, fmt)
elif kin... | python | def create_request_with_query(self, kind, query, size="thumb", fmt="json"):
"""api/data.[fmt], api/images/[size].[fmt] api/files.[fmt]
kind = ['data', 'images', 'files']
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michaelaye/pyciss | pyciss/opusapi.py | OPUS.get_between_times | def get_between_times(self, t1, t2, target=None):
"""
Query for OPUS data between times t1 and t2.
Parameters
----------
t1, t2 : datetime.datetime, strings
Start and end time for the query. If type is datetime, will be
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Query for OPUS data between times t1 and t2.
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t1, t2 : datetime.datetime, strings
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michaelaye/pyciss | pyciss/opusapi.py | OPUS.show_images | def show_images(self, size="small"):
"""Shows preview images using the Jupyter notebook HTML display.
Parameters
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size : {'small', 'med', 'thumb', 'full'}
Determines the size of the preview image to be shown.
"""
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michaelaye/pyciss | pyciss/opusapi.py | OPUS.download_results | def download_results(self, savedir=None, raw=True, calib=False, index=None):
"""Download the previously found and stored Opus obsids.
Parameters
==========
savedir: str or pathlib.Path, optional
If the database root folder as defined by the config.ini should not be used,
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michaelaye/pyciss | pyciss/opusapi.py | OPUS.download_previews | def download_previews(self, savedir=None):
"""Download preview files for the previously found and stored Opus obsids.
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==========
savedir: str or pathlib.Path, optional
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michaelaye/pyciss | pyciss/_utils.py | which_epi_janus_resonance | def which_epi_janus_resonance(name, time):
"""Find which swap situtation we are in by time.
Starting from 2006-01-21 where a Janus-Epimetheus swap occured, and
defining the next 4 years until the next swap as `scenario1, and the 4
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Calculate in units of 4 years, in whic... | python | def which_epi_janus_resonance(name, time):
"""Find which swap situtation we are in by time.
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koordinates/python-client | koordinates/layers.py | LayerManager.list_drafts | def list_drafts(self):
"""
A filterable list views of layers, returning the draft version of each layer.
If the most recent version of a layer or table has been published already,
it won’t be returned here.
"""
target_url = self.client.get_url('LAYER', 'GET', 'multidraft'... | python | def list_drafts(self):
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koordinates/python-client | koordinates/layers.py | LayerManager.list_versions | def list_versions(self, layer_id):
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Filterable list of versions of a layer, always ordered newest to oldest.
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koordinates/python-client | koordinates/layers.py | LayerManager.get_version | def get_version(self, layer_id, version_id, expand=[]):
"""
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"""
target_url = self.client.get_url('VERSION', 'GET', 'single', {'layer_id': layer_id, 'version_id': version_id})
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target_url = self.client.get_url('VERSION', 'GET', 'single', {'layer_id': layer_id, 'version_id': version_id})
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koordinates/python-client | koordinates/layers.py | LayerManager.get_published | def get_published(self, layer_id, expand=[]):
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koordinates/python-client | koordinates/layers.py | LayerManager.create_draft | def create_draft(self, layer_id):
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"""
Creates a new draft version.
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koordinates/python-client | koordinates/layers.py | LayerManager.start_import | def start_import(self, layer_id, version_id):
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koordinates/python-client | koordinates/layers.py | LayerManager.start_update | def start_update(self, layer_id):
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koordinates/python-client | koordinates/layers.py | LayerManager.set_metadata | def set_metadata(self, layer_id, version_id, fp):
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Set the XML metadata on a layer draft version.
:param file fp: file-like object to read the XML metadata from.
:raises NotAllowed: if the version is already published.
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koordinates/python-client | koordinates/layers.py | Layer.is_published_version | def is_published_version(self):
""" Return if this version is the published version of a layer """
pub_ver = getattr(self, 'published_version', None)
this_ver = getattr(self, 'this_version', None)
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""" Return if this version is the published version of a layer """
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koordinates/python-client | koordinates/layers.py | Layer.is_draft_version | def is_draft_version(self):
""" Return if this version is the draft version of a layer """
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koordinates/python-client | koordinates/layers.py | Layer.list_versions | def list_versions(self):
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koordinates/python-client | koordinates/layers.py | Layer.get_version | def get_version(self, version_id, expand=[]):
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koordinates/python-client | koordinates/layers.py | Layer.get_draft_version | def get_draft_version(self, expand=[]):
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koordinates/python-client | koordinates/layers.py | Layer.start_import | def start_import(self, version_id=None):
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koordinates/python-client | koordinates/layers.py | Layer.publish | def publish(self, version_id=None):
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koordinates/python-client | koordinates/layers.py | Layer.delete_version | def delete_version(self, version_id=None):
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koordinates/python-client | koordinates/catalog.py | CatalogManager._get_item_class | def _get_item_class(self, url):
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elif '/tables/' in url:
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elif '/sets/' in url:
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# return Document
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michaelaye/pyciss | pyciss/solitons.py | get_year_since_resonance | def get_year_since_resonance(ringcube):
"Calculate the fraction of the year since moon swap."
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td = ringcube.imagetime - t0
return td.days / 365.25 | python | def get_year_since_resonance(ringcube):
"Calculate the fraction of the year since moon swap."
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michaelaye/pyciss | pyciss/solitons.py | create_polynoms | def create_polynoms():
"""Create and return poly1d objects.
Uses the parameters from Morgan to create poly1d objects for
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"""
fname = pr.resource_filename('pyciss', 'data/soliton_prediction_parameters.csv')
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"""Create and return poly1d objects.
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fname = pr.resource_filename('pyciss', 'data/soliton_prediction_parameters.csv')
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michaelaye/pyciss | pyciss/solitons.py | check_for_soliton | def check_for_soliton(img_id):
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ringcube : pyciss.ringcube.RingCube
A containter class for a ring-projected ISS image file.
Returns
-------
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koordinates/python-client | koordinates/client.py | Client.get_manager | def get_manager(self, model):
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koordinates/python-client | koordinates/client.py | Client.reverse_url | def reverse_url(self, datatype, url, verb='GET', urltype='single', api_version=None):
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Unidata/siphon | siphon/cdmr/xarray_support.py | CDMRemoteStore.open_store_variable | def open_store_variable(self, name, var):
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data = indexing.LazilyOuterIndexedArray(CDMArrayWrapper(name, self))
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Unidata/siphon | siphon/catalog.py | _find_base_tds_url | def _find_base_tds_url(catalog_url):
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Unidata/siphon | siphon/catalog.py | DatasetCollection.filter_time_range | def filter_time_range(self, start, end, regex=None):
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"""Filter keys for all items within the desired time range.
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Unidata/siphon | siphon/catalog.py | CaseInsensitiveDict.pop | def pop(self, key, *args, **kwargs):
"""Remove and return the value associated with case-insensitive ``key``."""
return super(CaseInsensitiveDict, self).pop(CaseInsensitiveStr(key)) | python | def pop(self, key, *args, **kwargs):
"""Remove and return the value associated with case-insensitive ``key``."""
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Unidata/siphon | siphon/catalog.py | CaseInsensitiveDict._keys_to_lower | def _keys_to_lower(self):
"""Convert key set to lowercase."""
for k in list(self.keys()):
val = super(CaseInsensitiveDict, self).__getitem__(k)
super(CaseInsensitiveDict, self).__delitem__(k)
self.__setitem__(CaseInsensitiveStr(k), val) | python | def _keys_to_lower(self):
"""Convert key set to lowercase."""
for k in list(self.keys()):
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Unidata/siphon | siphon/catalog.py | Dataset.resolve_url | def resolve_url(self, catalog_url):
"""Resolve the url of the dataset when reading latest.xml.
Parameters
----------
catalog_url : str
The catalog url to be resolved
"""
if catalog_url != '':
resolver_base = catalog_url.split('catalog.xml')[0]
... | python | def resolve_url(self, catalog_url):
"""Resolve the url of the dataset when reading latest.xml.
Parameters
----------
catalog_url : str
The catalog url to be resolved
"""
if catalog_url != '':
resolver_base = catalog_url.split('catalog.xml')[0]
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Unidata/siphon | siphon/catalog.py | Dataset.make_access_urls | def make_access_urls(self, catalog_url, all_services, metadata=None):
"""Make fully qualified urls for the access methods enabled on the dataset.
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catalog_url : str
The top level server url
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catalog_url : str
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Unidata/siphon | siphon/catalog.py | Dataset.add_access_element_info | def add_access_element_info(self, access_element):
"""Create an access method from a catalog element."""
service_name = access_element.attrib['serviceName']
url_path = access_element.attrib['urlPath']
self.access_element_info[service_name] = url_path | python | def add_access_element_info(self, access_element):
"""Create an access method from a catalog element."""
service_name = access_element.attrib['serviceName']
url_path = access_element.attrib['urlPath']
self.access_element_info[service_name] = url_path | [
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Unidata/siphon | siphon/catalog.py | Dataset.download | def download(self, filename=None):
"""Download the dataset to a local file.
Parameters
----------
filename : str, optional
The full path to which the dataset will be saved
"""
if filename is None:
filename = self.name
with self.remote_ope... | python | def download(self, filename=None):
"""Download the dataset to a local file.
Parameters
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filename : str, optional
The full path to which the dataset will be saved
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if filename is None:
filename = self.name
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Unidata/siphon | siphon/catalog.py | Dataset.remote_access | def remote_access(self, service=None, use_xarray=None):
"""Access the remote dataset.
Open the remote dataset and get a netCDF4-compatible `Dataset` object providing
index-based subsetting capabilities.
Parameters
----------
service : str, optional
The name ... | python | def remote_access(self, service=None, use_xarray=None):
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Unidata/siphon | siphon/catalog.py | Dataset.subset | def subset(self, service=None):
"""Subset the dataset.
Open the remote dataset and get a client for talking to ``service``.
Parameters
----------
service : str, optional
The name of the service for subsetting the dataset. Defaults to 'NetcdfSubset'
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Open the remote dataset and get a client for talking to ``service``.
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Unidata/siphon | siphon/catalog.py | Dataset.access_with_service | def access_with_service(self, service, use_xarray=None):
"""Access the dataset using a particular service.
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service. For instance, for 'HTTPServer' this is a file-like object capable of
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Unidata/siphon | siphon/_tools.py | get_wind_components | def get_wind_components(speed, wdir):
r"""Calculate the U, V wind vector components from the speed and direction.
Parameters
----------
speed : array_like
The wind speed (magnitude)
wdir : array_like
The wind direction, specified as the direction from which the wind is
blowi... | python | def get_wind_components(speed, wdir):
r"""Calculate the U, V wind vector components from the speed and direction.
Parameters
----------
speed : array_like
The wind speed (magnitude)
wdir : array_like
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Unidata/siphon | siphon/cdmr/cdmremotefeature.py | CDMRemoteFeature._get_metadata | def _get_metadata(self):
"""Get header information and store as metadata for the endpoint."""
self.metadata = self.fetch_header()
self.variables = {g.name for g in self.metadata.grids} | python | def _get_metadata(self):
"""Get header information and store as metadata for the endpoint."""
self.metadata = self.fetch_header()
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Unidata/siphon | siphon/cdmr/cdmremotefeature.py | CDMRemoteFeature.fetch_header | def fetch_header(self):
"""Make a header request to the endpoint."""
query = self.query().add_query_parameter(req='header')
return self._parse_messages(self.get_query(query).content)[0] | python | def fetch_header(self):
"""Make a header request to the endpoint."""
query = self.query().add_query_parameter(req='header')
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Unidata/siphon | siphon/cdmr/cdmremotefeature.py | CDMRemoteFeature.fetch_feature_type | def fetch_feature_type(self):
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query = self.query().add_query_parameter(req='featureType')
return self.get_query(query).content | python | def fetch_feature_type(self):
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query = self.query().add_query_parameter(req='featureType')
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Unidata/siphon | siphon/cdmr/cdmremotefeature.py | CDMRemoteFeature.fetch_coords | def fetch_coords(self, query):
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return self._parse_messages(self.get_query(q).content) | python | def fetch_coords(self, query):
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Unidata/siphon | siphon/simplewebservice/igra2.py | IGRAUpperAir.request_data | def request_data(cls, time, site_id, derived=False):
"""Retreive IGRA version 2 data for one station.
Parameters
--------
site_id : str
11-character IGRA2 station identifier.
time : datetime
The date and time of the desired observation. If list of two tim... | python | def request_data(cls, time, site_id, derived=False):
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site_id : str
11-character IGRA2 station identifier.
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Unidata/siphon | siphon/simplewebservice/igra2.py | IGRAUpperAir._get_data | def _get_data(self):
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Unidata/siphon | siphon/simplewebservice/igra2.py | IGRAUpperAir._get_data_raw | def _get_data_raw(self):
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Returns a tuple with a string for the body, string for the headers,
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Unidata/siphon | siphon/simplewebservice/igra2.py | IGRAUpperAir._select_date_range | def _select_date_range(self, lines):
"""Identify lines containing headers within the range begin_date to end_date.
Parameters
-----
lines: list
list of lines from the IGRA2 data file.
"""
headers = []
num_lev = []
dates = []
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Parameters
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list of lines from the IGRA2 data file.
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Unidata/siphon | siphon/simplewebservice/igra2.py | IGRAUpperAir._get_fwf_params | def _get_fwf_params(self):
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Returns a dict with entries 'body' and 'header'.
"""
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Unidata/siphon | siphon/simplewebservice/igra2.py | IGRAUpperAir._clean_body_df | def _clean_body_df(self, df):
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if self.suffix == '-drvd.txt':
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... | python | def _clean_body_df(self, df):
"""Format the dataframe, remove empty rows, and add units attribute."""
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Unidata/siphon | siphon/simplewebservice/igra2.py | IGRAUpperAir._clean_header_df | def _clean_header_df(self, df):
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Unidata/siphon | siphon/simplewebservice/ndbc.py | NDBC.realtime_observations | def realtime_observations(cls, buoy, data_type='txt'):
"""Retrieve the realtime buoy data from NDBC.
Parameters
----------
buoy : str
Name of buoy
data_type : str
Type of data requested, must be one of
'txt' standard meteorological data
... | python | def realtime_observations(cls, buoy, data_type='txt'):
"""Retrieve the realtime buoy data from NDBC.
Parameters
----------
buoy : str
Name of buoy
data_type : str
Type of data requested, must be one of
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Unidata/siphon | siphon/simplewebservice/ndbc.py | NDBC._parse_met | def _parse_met(content):
"""Parse standard meteorological data from NDBC buoys.
Parameters
----------
content : str
Data to parse
Returns
-------
:class:`pandas.DataFrame` containing the data
"""
col_names = ['year', 'month', 'da... | python | def _parse_met(content):
"""Parse standard meteorological data from NDBC buoys.
Parameters
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content : str
Data to parse
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:class:`pandas.DataFrame` containing the data
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Unidata/siphon | siphon/simplewebservice/ndbc.py | NDBC._parse_supl | def _parse_supl(content):
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Parameters
----------
content : str
Data to parse
Returns
-------
:class:`pandas.DataFrame` containing the data
"""
col_names = ['year', 'month', 'day', 'hour', '... | python | def _parse_supl(content):
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Unidata/siphon | siphon/simplewebservice/ndbc.py | NDBC._check_if_url_valid | def _check_if_url_valid(url):
"""Check if a url is valid (returns 200) or not.
Parameters
----------
url : str
URL to check
Returns
-------
bool if url is valid
"""
r = requests.head(url)
if r.status_code == 200:
... | python | def _check_if_url_valid(url):
"""Check if a url is valid (returns 200) or not.
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url : str
URL to check
Returns
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bool if url is valid
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Unidata/siphon | siphon/simplewebservice/ndbc.py | NDBC.buoy_data_types | def buoy_data_types(cls, buoy):
"""Determine which types of data are available for a given buoy.
Parameters
----------
buoy : str
Buoy name
Returns
-------
dict of valid file extensions and their descriptions
"""
endpoint = cls()... | python | def buoy_data_types(cls, buoy):
"""Determine which types of data are available for a given buoy.
Parameters
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buoy : str
Buoy name
Returns
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dict of valid file extensions and their descriptions
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Unidata/siphon | siphon/simplewebservice/ndbc.py | NDBC.raw_buoy_data | def raw_buoy_data(cls, buoy, data_type='txt'):
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Parameters
----------
buoy : str
Name of buoy
data_type : str
Type of data requested, must be one of
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Unidata/siphon | siphon/http_util.py | HTTPSessionManager.create_session | def create_session(self):
"""Create a new HTTP session with our user-agent set.
Returns
-------
session : requests.Session
The created session
See Also
--------
urlopen, set_session_options
"""
ret = requests.Session()
ret.he... | python | def create_session(self):
"""Create a new HTTP session with our user-agent set.
Returns
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session : requests.Session
The created session
See Also
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Unidata/siphon | siphon/http_util.py | DataQuery.lonlat_box | def lonlat_box(self, west, east, south, north):
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This adds a request for a spatial bounding box, bounded by ('north', 'south')
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in-place, but returns `self` ... | python | def lonlat_box(self, west, east, south, north):
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Unidata/siphon | siphon/http_util.py | DataQuery.lonlat_point | def lonlat_point(self, lon, lat):
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Unidata/siphon | siphon/http_util.py | DataQuery.time | def time(self, time):
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"""Add a request for a specific time to the query.
This modifies the query in-place, but returns `self` so that multiple queries
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Unidata/siphon | siphon/simplewebservice/iastate.py | IAStateUpperAir.request_data | def request_data(cls, time, site_id, **kwargs):
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The date and time of the desired observation.
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Unidata/siphon | siphon/simplewebservice/iastate.py | IAStateUpperAir.request_all_data | def request_all_data(cls, time, pressure=None, **kwargs):
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return Station(id=stid, ele... | [
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Unidata/siphon | siphon/radarserver.py | RadarQuery.stations | def stations(self, *stns):
"""Specify one or more stations for the query.
This modifies the query in-place, but returns `self` so that multiple
queries can be chained together on one line.
This replaces any existing spatial queries that have been set.
Parameters
------... | python | def stations(self, *stns):
"""Specify one or more stations for the query.
This modifies the query in-place, but returns `self` so that multiple
queries can be chained together on one line.
This replaces any existing spatial queries that have been set.
Parameters
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Unidata/siphon | siphon/radarserver.py | RadarServer.validate_query | def validate_query(self, query):
"""Validate a query.
Determines whether `query` is well-formed. This includes checking for all
required parameters, as well as checking parameters for valid values.
Parameters
----------
query : RadarQuery
The query to valida... | python | def validate_query(self, query):
"""Validate a query.
Determines whether `query` is well-formed. This includes checking for all
required parameters, as well as checking parameters for valid values.
Parameters
----------
query : RadarQuery
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Unidata/siphon | siphon/radarserver.py | RadarServer.get_catalog | def get_catalog(self, query):
"""Fetch a parsed THREDDS catalog from the radar server.
Requests a catalog of radar data files data from the radar server given the
parameters in `query` and returns a :class:`~siphon.catalog.TDSCatalog` instance.
Parameters
----------
que... | python | def get_catalog(self, query):
"""Fetch a parsed THREDDS catalog from the radar server.
Requests a catalog of radar data files data from the radar server given the
parameters in `query` and returns a :class:`~siphon.catalog.TDSCatalog` instance.
Parameters
----------
que... | [
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Requests a catalog of radar data files data from the radar server given the
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Unidata/siphon | siphon/simplewebservice/acis.py | acis_request | def acis_request(method, params):
"""Request data from the ACIS Web Services API.
Makes a request from the ACIS Web Services API for data
based on a given method (StnMeta,StnData,MultiStnData,GridData,General)
and parameters string. Information about the parameters can be obtained at:
http://www.rc... | python | def acis_request(method, params):
"""Request data from the ACIS Web Services API.
Makes a request from the ACIS Web Services API for data
based on a given method (StnMeta,StnData,MultiStnData,GridData,General)
and parameters string. Information about the parameters can be obtained at:
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Unidata/siphon | siphon/ncss.py | parse_xml | def parse_xml(data, handle_units):
"""Parse XML data returned by NCSS."""
root = ET.fromstring(data)
return squish(parse_xml_dataset(root, handle_units)) | python | def parse_xml(data, handle_units):
"""Parse XML data returned by NCSS."""
root = ET.fromstring(data)
return squish(parse_xml_dataset(root, handle_units)) | [
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Unidata/siphon | siphon/ncss.py | parse_xml_point | def parse_xml_point(elem):
"""Parse an XML point tag."""
point = {}
units = {}
for data in elem.findall('data'):
name = data.get('name')
unit = data.get('units')
point[name] = float(data.text) if name != 'date' else parse_iso_date(data.text)
if unit:
units[nam... | python | def parse_xml_point(elem):
"""Parse an XML point tag."""
point = {}
units = {}
for data in elem.findall('data'):
name = data.get('name')
unit = data.get('units')
point[name] = float(data.text) if name != 'date' else parse_iso_date(data.text)
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units[nam... | [
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