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genialis/resolwe | resolwe/flow/utils/stats.py | SimpleLoadAvg.add | def add(self, count, timestamp=None):
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:param timestamp: The timestamp to add. Defaults to None,
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"""Add a value at the specified time to the series.
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genialis/resolwe | resolwe/flow/utils/stats.py | SimpleLoadAvg.to_dict | def to_dict(self):
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result[meta.display] = meta.value
return result | python | def to_dict(self):
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result = {}
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.listFormats | def listFormats(self, vendorSpecific=None):
"""See Also: listFormatsResponse()
Args:
vendorSpecific:
Returns:
"""
response = self.listFormatsResponse(vendorSpecific)
return self._read_dataone_type_response(response, 'ObjectFormatList') | python | def listFormats(self, vendorSpecific=None):
"""See Also: listFormatsResponse()
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response = self.listFormatsResponse(vendorSpecific)
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.getFormat | def getFormat(self, formatId, vendorSpecific=None):
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response = self.getFormatResponse(formatId, vendorSpecific)
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.reserveIdentifierResponse | def reserveIdentifierResponse(self, pid, vendorSpecific=None):
"""CNCore.getLogRecords(session[, fromDate][, toDate][, event][, start][,
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d1_client.baseclient.... | python | def reserveIdentifierResponse(self, pid, vendorSpecific=None):
"""CNCore.getLogRecords(session[, fromDate][, toDate][, event][, start][,
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.reserveIdentifier | def reserveIdentifier(self, pid, vendorSpecific=None):
"""See Also: reserveIdentifierResponse()
Args:
pid:
vendorSpecific:
Returns:
"""
response = self.reserveIdentifierResponse(pid, vendorSpecific)
return self._read_dataone_type_response(response, ... | python | def reserveIdentifier(self, pid, vendorSpecific=None):
"""See Also: reserveIdentifierResponse()
Args:
pid:
vendorSpecific:
Returns:
"""
response = self.reserveIdentifierResponse(pid, vendorSpecific)
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.listChecksumAlgorithms | def listChecksumAlgorithms(self, vendorSpecific=None):
"""See Also: listChecksumAlgorithmsResponse()
Args:
vendorSpecific:
Returns:
"""
response = self.listChecksumAlgorithmsResponse(vendorSpecific)
return self._read_dataone_type_response(response, 'ChecksumA... | python | def listChecksumAlgorithms(self, vendorSpecific=None):
"""See Also: listChecksumAlgorithmsResponse()
Args:
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response = self.listChecksumAlgorithmsResponse(vendorSpecific)
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.setObsoletedByResponse | def setObsoletedByResponse(
self, pid, obsoletedByPid, serialVersion, vendorSpecific=None
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"""CNCore.setObsoletedBy(session, pid, obsoletedByPid, serialVersion) → boolean
https://releases.dataone.org/online/api-
documentation-v2.0.1/apis/CN_APIs.html#CNCore.setObsoletedBy.
... | python | def setObsoletedByResponse(
self, pid, obsoletedByPid, serialVersion, vendorSpecific=None
):
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https://releases.dataone.org/online/api-
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obsoletedByPid:
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.listNodes | def listNodes(self, vendorSpecific=None):
"""See Also: listNodesResponse()
Args:
vendorSpecific:
Returns:
"""
response = self.listNodesResponse(vendorSpecific)
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"""See Also: listNodesResponse()
Args:
vendorSpecific:
Returns:
"""
response = self.listNodesResponse(vendorSpecific)
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.hasReservationResponse | def hasReservationResponse(self, pid, subject, vendorSpecific=None):
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INTERNAL.
CNCore.hasReservation(session, pid) → boolean
https://releases.dataone.org/online/api-documentation-v2.0.1/apis/CN_APIs.html#CNCore.hasR... | python | def hasReservationResponse(self, pid, subject, vendorSpecific=None):
"""CNCore.registerSystemMetadata(session, pid, sysmeta) → Identifier CN
INTERNAL.
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.hasReservation | def hasReservation(self, pid, subject, vendorSpecific=None):
"""See Also: hasReservationResponse()
Args:
pid:
subject:
vendorSpecific:
Returns:
"""
response = self.hasReservationResponse(pid, subject, vendorSpecific)
return self._read_bool... | python | def hasReservation(self, pid, subject, vendorSpecific=None):
"""See Also: hasReservationResponse()
Args:
pid:
subject:
vendorSpecific:
Returns:
"""
response = self.hasReservationResponse(pid, subject, vendorSpecific)
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.resolve | def resolve(self, pid, vendorSpecific=None):
"""See Also: resolveResponse()
Args:
pid:
vendorSpecific:
Returns:
"""
response = self.resolveResponse(pid, vendorSpecific)
return self._read_dataone_type_response(
response, 'ObjectLocationLi... | python | def resolve(self, pid, vendorSpecific=None):
"""See Also: resolveResponse()
Args:
pid:
vendorSpecific:
Returns:
"""
response = self.resolveResponse(pid, vendorSpecific)
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.searchResponse | def searchResponse(self, queryType, query, vendorSpecific=None, **kwargs):
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https://releases.dataone.org/online/api-
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queryType:
query:
vendor... | python | def searchResponse(self, queryType, query, vendorSpecific=None, **kwargs):
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.search | def search(self, queryType, query=None, vendorSpecific=None, **kwargs):
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.queryResponse | def queryResponse(self, queryEngine, query=None, vendorSpecific=None, **kwargs):
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https://releases.dataone.org/online/api-
documentation-v2.0.1/apis/CN_APIs.html#CNRead.query.
Args:
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query:
... | python | def queryResponse(self, queryEngine, query=None, vendorSpecific=None, **kwargs):
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https://releases.dataone.org/online/api-
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.setRightsHolderResponse | def setRightsHolderResponse(self, pid, userId, serialVersion, vendorSpecific=None):
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documentation-v2.0.1/apis/CN_APIs.html#CNAuthorization.setRightsHolder.
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"""CNAuthorization.setRightsHolder(session, pid, userId, serialVersion)
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.setRightsHolder | def setRightsHolder(self, pid, userId, serialVersion, vendorSpecific=None):
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Args:
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serialVersion:
vendorSpecific:
Returns:
"""
response = self.setRightsHolderResponse(
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.setAccessPolicyResponse | def setAccessPolicyResponse(
self, pid, accessPolicy, serialVersion, vendorSpecific=None
):
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):
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.setAccessPolicy | def setAccessPolicy(self, pid, accessPolicy, serialVersion, vendorSpecific=None):
"""See Also: setAccessPolicyResponse()
Args:
pid:
accessPolicy:
serialVersion:
vendorSpecific:
Returns:
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response = self.setAccessPolicyResponse(
... | python | def setAccessPolicy(self, pid, accessPolicy, serialVersion, vendorSpecific=None):
"""See Also: setAccessPolicyResponse()
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serialVersion:
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.registerAccountResponse | def registerAccountResponse(self, person, vendorSpecific=None):
"""CNIdentity.registerAccount(session, person) → Subject
https://releases.dataone.org/online/api-
documentation-v2.0.1/apis/CN_APIs.html#CNIdentity.registerAccount.
Args:
person:
vendorSpecific:
... | python | def registerAccountResponse(self, person, vendorSpecific=None):
"""CNIdentity.registerAccount(session, person) → Subject
https://releases.dataone.org/online/api-
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.registerAccount | def registerAccount(self, person, vendorSpecific=None):
"""See Also: registerAccountResponse()
Args:
person:
vendorSpecific:
Returns:
"""
response = self.registerAccountResponse(person, vendorSpecific)
return self._read_boolean_response(response) | python | def registerAccount(self, person, vendorSpecific=None):
"""See Also: registerAccountResponse()
Args:
person:
vendorSpecific:
Returns:
"""
response = self.registerAccountResponse(person, vendorSpecific)
return self._read_boolean_response(response) | [
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.updateAccountResponse | def updateAccountResponse(self, subject, person, vendorSpecific=None):
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https://releases.dataone.org/online/api-
documentation-v2.0.1/apis/CN_APIs.html#CNIdentity.updateAccount.
Args:
subject:
person:
ve... | python | def updateAccountResponse(self, subject, person, vendorSpecific=None):
"""CNIdentity.updateAccount(session, person) → Subject
https://releases.dataone.org/online/api-
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person:
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.updateAccount | def updateAccount(self, subject, person, vendorSpecific=None):
"""See Also: updateAccountResponse()
Args:
subject:
person:
vendorSpecific:
Returns:
"""
response = self.updateAccountResponse(subject, person, vendorSpecific)
return self._rea... | python | def updateAccount(self, subject, person, vendorSpecific=None):
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person:
vendorSpecific:
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response = self.updateAccountResponse(subject, person, vendorSpecific)
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.verifyAccount | def verifyAccount(self, subject, vendorSpecific=None):
"""See Also: verifyAccountResponse()
Args:
subject:
vendorSpecific:
Returns:
"""
response = self.verifyAccountResponse(subject, vendorSpecific)
return self._read_boolean_response(response) | python | def verifyAccount(self, subject, vendorSpecific=None):
"""See Also: verifyAccountResponse()
Args:
subject:
vendorSpecific:
Returns:
"""
response = self.verifyAccountResponse(subject, vendorSpecific)
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.getSubjectInfo | def getSubjectInfo(self, subject, vendorSpecific=None):
"""See Also: getSubjectInfoResponse()
Args:
subject:
vendorSpecific:
Returns:
"""
response = self.getSubjectInfoResponse(subject, vendorSpecific)
return self._read_dataone_type_response(respons... | python | def getSubjectInfo(self, subject, vendorSpecific=None):
"""See Also: getSubjectInfoResponse()
Args:
subject:
vendorSpecific:
Returns:
"""
response = self.getSubjectInfoResponse(subject, vendorSpecific)
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.listSubjectsResponse | def listSubjectsResponse(
self, query, status=None, start=None, count=None, vendorSpecific=None
):
"""CNIdentity.listSubjects(session, query, status, start, count) → SubjectList
https://releases.dataone.org/online/api-
documentation-v2.0.1/apis/CN_APIs.html#CNIdentity.listSubjects.
... | python | def listSubjectsResponse(
self, query, status=None, start=None, count=None, vendorSpecific=None
):
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https://releases.dataone.org/online/api-
documentation-v2.0.1/apis/CN_APIs.html#CNIdentity.listSubjects.
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.listSubjects | def listSubjects(
self, query, status=None, start=None, count=None, vendorSpecific=None
):
"""See Also: listSubjectsResponse()
Args:
query:
status:
start:
count:
vendorSpecific:
Returns:
"""
response = self.listSubj... | python | def listSubjects(
self, query, status=None, start=None, count=None, vendorSpecific=None
):
"""See Also: listSubjectsResponse()
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status:
start:
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.mapIdentityResponse | def mapIdentityResponse(
self, primarySubject, secondarySubject, vendorSpecific=None
):
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https://releases.dataone.org/online/api-
documentation-v2.0.1/apis/CN_APIs.html#CNIdentity.mapIdentity.
Args:
primarySubjec... | python | def mapIdentityResponse(
self, primarySubject, secondarySubject, vendorSpecific=None
):
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https://releases.dataone.org/online/api-
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.mapIdentity | def mapIdentity(self, primarySubject, secondarySubject, vendorSpecific=None):
"""See Also: mapIdentityResponse()
Args:
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vendorSpecific:
Returns:
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.removeMapIdentity | def removeMapIdentity(self, subject, vendorSpecific=None):
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subject:
vendorSpecific:
Returns:
"""
response = self.removeMapIdentityResponse(subject, vendorSpecific)
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.denyMapIdentity | def denyMapIdentity(self, subject, vendorSpecific=None):
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response = self.denyMapIdentityResponse(subject, vendorSpecific)
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https://releases.dataone.org/online/api-
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Args:
subject:
vendorSpecif... | python | def requestMapIdentityResponse(self, subject, vendorSpecific=None):
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.requestMapIdentity | def requestMapIdentity(self, subject, vendorSpecific=None):
"""See Also: requestMapIdentityResponse()
Args:
subject:
vendorSpecific:
Returns:
"""
response = self.requestMapIdentityResponse(subject, vendorSpecific)
return self._read_boolean_response(... | python | def requestMapIdentity(self, subject, vendorSpecific=None):
"""See Also: requestMapIdentityResponse()
Args:
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.confirmMapIdentity | def confirmMapIdentity(self, subject, vendorSpecific=None):
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subject:
vendorSpecific:
Returns:
"""
response = self.confirmMapIdentityResponse(subject, vendorSpecific)
return self._read_boolean_response(... | python | def confirmMapIdentity(self, subject, vendorSpecific=None):
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response = self.confirmMapIdentityResponse(subject, vendorSpecific)
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.createGroupResponse | def createGroupResponse(self, group, vendorSpecific=None):
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https://releases.dataone.org/online/api-
documentation-v2.0.1/apis/CN_APIs.html#CNIdentity.createGroup.
Args:
group:
vendorSpecific:
Returns:
... | python | def createGroupResponse(self, group, vendorSpecific=None):
"""CNIdentity.createGroup(session, groupName) → Subject
https://releases.dataone.org/online/api-
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.createGroup | def createGroup(self, group, vendorSpecific=None):
"""See Also: createGroupResponse()
Args:
group:
vendorSpecific:
Returns:
"""
response = self.createGroupResponse(group, vendorSpecific)
return self._read_boolean_response(response) | python | def createGroup(self, group, vendorSpecific=None):
"""See Also: createGroupResponse()
Args:
group:
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Returns:
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response = self.createGroupResponse(group, vendorSpecific)
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.updateGroupResponse | def updateGroupResponse(self, group, vendorSpecific=None):
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https://releases.dataone.org/online/api-
documentation-v2.0.1/apis/CN_APIs.html#CNIdentity.addGroupMembers.
Args:
group:
vendorSpecific:
... | python | def updateGroupResponse(self, group, vendorSpecific=None):
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https://releases.dataone.org/online/api-
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.updateGroup | def updateGroup(self, group, vendorSpecific=None):
"""See Also: updateGroupResponse()
Args:
group:
vendorSpecific:
Returns:
"""
response = self.updateGroupResponse(group, vendorSpecific)
return self._read_boolean_response(response) | python | def updateGroup(self, group, vendorSpecific=None):
"""See Also: updateGroupResponse()
Args:
group:
vendorSpecific:
Returns:
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response = self.updateGroupResponse(group, vendorSpecific)
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.setReplicationStatusResponse | def setReplicationStatusResponse(
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):
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boolean https://releases.dataone.org/online/api-documentatio
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self, pid, nodeRef, status, dataoneError=None, vendorSpecific=None
):
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.setReplicationStatus | def setReplicationStatus(
self, pid, nodeRef, status, dataoneError=None, vendorSpecific=None
):
"""See Also: setReplicationStatusResponse()
Args:
pid:
nodeRef:
status:
dataoneError:
vendorSpecific:
Returns:
"""
resp... | python | def setReplicationStatus(
self, pid, nodeRef, status, dataoneError=None, vendorSpecific=None
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nodeRef:
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.updateReplicationMetadataResponse | def updateReplicationMetadataResponse(
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):
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serialVersion) → boolean https://releases.dataone.org/online/api-
documentation-v2.0.1/apis/CN_AP Is.html... | python | def updateReplicationMetadataResponse(
self, pid, replicaMetadata, serialVersion, vendorSpecific=None
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.updateReplicationMetadata | def updateReplicationMetadata(
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.setReplicationPolicyResponse | def setReplicationPolicyResponse(
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):
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.setReplicationPolicy | def setReplicationPolicy(self, pid, policy, serialVersion, vendorSpecific=None):
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Args:
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policy:
serialVersion:
vendorSpecific:
Returns:
"""
response = self.setReplicationPolicyResponse(
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serialVersion:
vendorSpecific:
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.isNodeAuthorizedResponse | def isNodeAuthorizedResponse(self, targetNodeSubject, pid, vendorSpecific=None):
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replicatePermission) → boolean() https://releases.dataone.org/online/api-
documentation-v2.0.1/apis/CN_APIs.html#CNReplication.isNodeAuthorized.
... | python | def isNodeAuthorizedResponse(self, targetNodeSubject, pid, vendorSpecific=None):
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.isNodeAuthorized | def isNodeAuthorized(self, targetNodeSubject, pid, vendorSpecific=None):
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Args:
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vendorSpecific:
Returns:
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.deleteReplicationMetadataResponse | def deleteReplicationMetadataResponse(
self, pid, nodeId, serialVersion, vendorSpecific=None
):
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→ boolean https://releases.dataone.org/online/api-docume
ntation-v2.0.1/apis/CN_APIs.html#CNReplication.del... | python | def deleteReplicationMetadataResponse(
self, pid, nodeId, serialVersion, vendorSpecific=None
):
"""CNReplication.deleteReplicationMetadata(session, pid, policy, serialVersion)
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.deleteReplicationMetadata | def deleteReplicationMetadata(
self, pid, nodeId, serialVersion, vendorSpecific=None
):
"""See Also: deleteReplicationMetadataResponse()
Args:
pid:
nodeId:
serialVersion:
vendorSpecific:
Returns:
"""
response = self.deleteRep... | python | def deleteReplicationMetadata(
self, pid, nodeId, serialVersion, vendorSpecific=None
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nodeId:
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.updateNodeCapabilitiesResponse | def updateNodeCapabilitiesResponse(self, nodeId, node, vendorSpecific=None):
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https://releases.dataone.org/online/api-documentation-v2.0.1/apis/CN_AP
Is.html#CNRegister.updateNodeCapabilities.
Args:
nodeId:
... | python | def updateNodeCapabilitiesResponse(self, nodeId, node, vendorSpecific=None):
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https://releases.dataone.org/online/api-documentation-v2.0.1/apis/CN_AP
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.updateNodeCapabilities | def updateNodeCapabilities(self, nodeId, node, vendorSpecific=None):
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Args:
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response = self.updateNodeCapabilitiesResponse(nodeId, node, vendorSpecific)
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.registerResponse | def registerResponse(self, node, vendorSpecific=None):
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https://releases.dataone.org/online/api-
documentation-v2.0.1/apis/CN_APIs.html#CNRegister.register.
Args:
node:
vendorSpecific:
Returns:
""... | python | def registerResponse(self, node, vendorSpecific=None):
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DataONEorg/d1_python | lib_client/src/d1_client/cnclient.py | CoordinatingNodeClient.register | def register(self, node, vendorSpecific=None):
"""See Also: registerResponse()
Args:
node:
vendorSpecific:
Returns:
"""
response = self.registerResponse(node, vendorSpecific)
return self._read_boolean_response(response) | python | def register(self, node, vendorSpecific=None):
"""See Also: registerResponse()
Args:
node:
vendorSpecific:
Returns:
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response = self.registerResponse(node, vendorSpecific)
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genialis/resolwe | resolwe/flow/management/commands/register.py | Command.valid | def valid(self, instance, schema):
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try:
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except jsonschema.exceptions.ValidationError as ex:
self.stderr.write(" VALIDATION ERROR: {}".format(instance['name'] if 'name' in instance else ''))
self.s... | python | def valid(self, instance, schema):
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try:
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genialis/resolwe | resolwe/flow/management/commands/register.py | Command.find_descriptor_schemas | def find_descriptor_schemas(self, schema_file):
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if not schemas:
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"""Find descriptor schemas in given path."""
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genialis/resolwe | resolwe/flow/management/commands/register.py | Command.find_schemas | def find_schemas(self, schema_path, schema_type=SCHEMA_TYPE_PROCESS, verbosity=1):
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genialis/resolwe | resolwe/flow/management/commands/register.py | Command.register_processes | def register_processes(self, process_schemas, user, force=False, verbosity=1):
"""Read and register processors."""
log_processors = []
log_templates = []
for p in process_schemas:
# TODO: Remove this when all processes are migrated to the
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... | python | def register_processes(self, process_schemas, user, force=False, verbosity=1):
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log_processors = []
log_templates = []
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# TODO: Remove this when all processes are migrated to the
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genialis/resolwe | resolwe/flow/management/commands/register.py | Command.register_descriptors | def register_descriptors(self, descriptor_schemas, user, force=False, verbosity=1):
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if ... | python | def register_descriptors(self, descriptor_schemas, user, force=False, verbosity=1):
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genialis/resolwe | resolwe/flow/management/commands/register.py | Command.retire | def retire(self, process_schemas):
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genialis/resolwe | resolwe/flow/management/commands/register.py | Command.handle | def handle(self, *args, **options):
"""Register processes."""
force = options.get('force')
retire = options.get('retire')
verbosity = int(options.get('verbosity'))
users = get_user_model().objects.filter(is_superuser=True).order_by('date_joined')
if not users.exists():
... | python | def handle(self, *args, **options):
"""Register processes."""
force = options.get('force')
retire = options.get('retire')
verbosity = int(options.get('verbosity'))
users = get_user_model().objects.filter(is_superuser=True).order_by('date_joined')
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DataONEorg/d1_python | gmn/src/d1_gmn/app/did.py | is_valid_pid_for_create | def is_valid_pid_for_create(did):
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DataONEorg/d1_python | gmn/src/d1_gmn/app/did.py | is_valid_pid_to_be_updated | def is_valid_pid_to_be_updated(did):
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return (
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"""Return True if ``did`` is the PID of an object that can be updated (obsoleted)
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return (
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DataONEorg/d1_python | gmn/src/d1_gmn/app/did.py | is_valid_sid_for_chain | def is_valid_sid_for_chain(pid, sid):
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- If the chain does not have a SID, the new SID must be previously unused.
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DataONEorg/d1_python | gmn/src/d1_gmn/app/did.py | is_existing_object | def is_existing_object(did):
"""Return True if PID is for an object for which science bytes are stored locally.
This excludes SIDs and PIDs for unprocessed replica requests, remote or non-existing
revisions of local replicas and objects aggregated in Resource Maps.
"""
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"""Return True if PID is for an object for which science bytes are stored locally.
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DataONEorg/d1_python | gmn/src/d1_gmn/app/did.py | classify_identifier | def classify_identifier(did):
"""Return a text fragment classifying the ``did``
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"""
if _is_unused_did(did):
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"""Return a text fragment classifying the ``did``
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"""
if _is_unused_did(did):
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DataONEorg/d1_python | gmn/src/d1_gmn/app/did.py | is_local_replica | def is_local_replica(pid):
"""Includes unprocessed replication requests."""
return d1_gmn.app.models.LocalReplica.objects.filter(pid__did=pid).exists() | python | def is_local_replica(pid):
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DataONEorg/d1_python | gmn/src/d1_gmn/app/did.py | is_unprocessed_local_replica | def is_unprocessed_local_replica(pid):
"""Is local replica with status "queued"."""
return d1_gmn.app.models.LocalReplica.objects.filter(
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DataONEorg/d1_python | gmn/src/d1_gmn/app/did.py | is_revision_chain_placeholder | def is_revision_chain_placeholder(pid):
"""For replicas, the PIDs referenced in revision chains are reserved for use by
other replicas."""
return d1_gmn.app.models.ReplicaRevisionChainReference.objects.filter(
pid__did=pid
).exists() | python | def is_revision_chain_placeholder(pid):
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DataONEorg/d1_python | gmn/src/d1_gmn/app/did.py | _is_did | def _is_did(did):
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"""
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genialis/resolwe | resolwe/elastic/utils/__init__.py | prepare_connection | def prepare_connection():
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.. warning::
In case of using multiprocessing/multithreading, connection will
be probably initialized in the main process/thread and the same
connection (socket) will be used in all processes/threads. This
w... | python | def prepare_connection():
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In case of using multiprocessing/multithreading, connection will
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DataONEorg/d1_python | gmn/src/d1_gmn/app/event_log.py | _log | def _log(pid, request, event, timestamp=None):
"""Log an operation that was performed on a sciobj."""
# Support logging events that are not associated with an object.
sciobj_model = None
if pid is not None:
try:
sciobj_model = d1_gmn.app.models.ScienceObject.objects.filter(pid__did=p... | python | def _log(pid, request, event, timestamp=None):
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# Support logging events that are not associated with an object.
sciobj_model = None
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DataONEorg/d1_python | gmn/src/d1_gmn/app/event_log.py | _is_ignored_read_event | def _is_ignored_read_event(request):
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See settings_site.py for description and rationale for the settings.
"""
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DataONEorg/d1_python | gmn/src/d1_gmn/app/auth.py | action_to_level | def action_to_level(action):
"""Map action name to action level."""
try:
return ACTION_LEVEL_MAP[action]
except LookupError:
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0, 'Unknown action. action="{}"'.format(action)
) | python | def action_to_level(action):
"""Map action name to action level."""
try:
return ACTION_LEVEL_MAP[action]
except LookupError:
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DataONEorg/d1_python | gmn/src/d1_gmn/app/auth.py | level_to_action | def level_to_action(level):
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try:
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except LookupError:
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"""Map action level to action name."""
try:
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DataONEorg/d1_python | gmn/src/d1_gmn/app/auth.py | get_trusted_subjects | def get_trusted_subjects():
"""Get set of subjects that have unlimited access to all SciObj and APIs on this
node."""
cert_subj = _get_client_side_certificate_subject()
return (
d1_gmn.app.node_registry.get_cn_subjects()
| django.conf.settings.DATAONE_TRUSTED_SUBJECTS
| {cert_sub... | python | def get_trusted_subjects():
"""Get set of subjects that have unlimited access to all SciObj and APIs on this
node."""
cert_subj = _get_client_side_certificate_subject()
return (
d1_gmn.app.node_registry.get_cn_subjects()
| django.conf.settings.DATAONE_TRUSTED_SUBJECTS
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DataONEorg/d1_python | gmn/src/d1_gmn/app/auth.py | is_trusted_subject | def is_trusted_subject(request):
"""Determine if calling subject is fully trusted."""
logging.debug('Active subjects: {}'.format(', '.join(request.all_subjects_set)))
logging.debug('Trusted subjects: {}'.format(', '.join(get_trusted_subjects())))
return not request.all_subjects_set.isdisjoint(get_truste... | python | def is_trusted_subject(request):
"""Determine if calling subject is fully trusted."""
logging.debug('Active subjects: {}'.format(', '.join(request.all_subjects_set)))
logging.debug('Trusted subjects: {}'.format(', '.join(get_trusted_subjects())))
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DataONEorg/d1_python | gmn/src/d1_gmn/app/auth.py | _get_client_side_certificate_subject | def _get_client_side_certificate_subject():
"""Return the DN from the client side certificate as a D1 subject if a client side
cert has been configured.
Else return None.
"""
subject = django.core.cache.cache.get('client_side_certificate_subject')
if subject is not None:
return subject... | python | def _get_client_side_certificate_subject():
"""Return the DN from the client side certificate as a D1 subject if a client side
cert has been configured.
Else return None.
"""
subject = django.core.cache.cache.get('client_side_certificate_subject')
if subject is not None:
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DataONEorg/d1_python | gmn/src/d1_gmn/app/auth.py | is_allowed | def is_allowed(request, level, pid):
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DataONEorg/d1_python | gmn/src/d1_gmn/app/auth.py | assert_create_update_delete_permission | def assert_create_update_delete_permission(request):
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infrastructure (CNs)."""
if not has_create_update_delete_permission(request):
raise d1_common.types.exceptions.NotAuthorized(
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'Access allowed... | python | def assert_create_update_delete_permission(request):
"""Access only by subjects with Create/Update/Delete permission and by trusted
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if not has_create_update_delete_permission(request):
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DataONEorg/d1_python | gmn/src/d1_gmn/app/auth.py | assert_allowed | def assert_allowed(request, level, pid):
"""Assert that one or more subjects are allowed to perform action on object.
Raise NotAuthorized if object exists and subject is not allowed. Raise NotFound if
object does not exist.
"""
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"""Assert that one or more subjects are allowed to perform action on object.
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object does not exist.
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DataONEorg/d1_python | gmn/src/d1_gmn/app/auth.py | format_active_subjects | def format_active_subjects(request):
"""Create a string listing active subjects for this connection, suitable for
appending to authentication error messages."""
decorated_subject_list = [request.primary_subject_str + ' (primary)']
for subject in request.all_subjects_set:
if subject != request.pr... | python | def format_active_subjects(request):
"""Create a string listing active subjects for this connection, suitable for
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decorated_subject_list = [request.primary_subject_str + ' (primary)']
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DataONEorg/d1_python | dev_tools/src/d1_dev/src-remove-unused-imports.py | main | def main():
"""Remove unused imports Unsafe!
Only tested on our codebase, which uses simple absolute imports on the form, "import
a.b.c".
"""
parser = argparse.ArgumentParser(
description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter
)
parser.add_argument("path", na... | python | def main():
"""Remove unused imports Unsafe!
Only tested on our codebase, which uses simple absolute imports on the form, "import
a.b.c".
"""
parser = argparse.ArgumentParser(
description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter
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DataONEorg/d1_python | dev_tools/src/d1_dev/src-remove-unused-imports.py | comment_import | def comment_import(r, unused_dot_list):
"""Comment out import for {dot_str}."""
unused_dot_str = ".".join(unused_dot_list)
for n in r("ImportNode"):
if n.names()[0] == unused_dot_str:
# The "!" is inserted so that this line doesn't show up when searching for
# the comment pat... | python | def comment_import(r, unused_dot_list):
"""Comment out import for {dot_str}."""
unused_dot_str = ".".join(unused_dot_list)
for n in r("ImportNode"):
if n.names()[0] == unused_dot_str:
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DataONEorg/d1_python | dev_tools/src/d1_dev/src-remove-unused-imports.py | get_atomtrailer_list | def get_atomtrailer_list(r):
"""Capture only the leading dotted name list.
A full sequence typically includes function calls and parameters.
pkga.pkgb.pkgc.one_call(arg1, arg2, arg3=4)
"""
dot_set = set()
for n in r.find_all(("atomtrailers",)):
name_list = []
for x in n.value:
... | python | def get_atomtrailer_list(r):
"""Capture only the leading dotted name list.
A full sequence typically includes function calls and parameters.
pkga.pkgb.pkgc.one_call(arg1, arg2, arg3=4)
"""
dot_set = set()
for n in r.find_all(("atomtrailers",)):
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genialis/resolwe | resolwe/flow/views/collection.py | CollectionViewSet.custom_filter_tags | def custom_filter_tags(self, value, search):
"""Support tags query."""
if not isinstance(value, list):
value = value.split(',')
filters = [Q('match', **{'tags': item}) for item in value]
search = search.query('bool', must=filters)
return search | python | def custom_filter_tags(self, value, search):
"""Support tags query."""
if not isinstance(value, list):
value = value.split(',')
filters = [Q('match', **{'tags': item}) for item in value]
search = search.query('bool', must=filters)
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genialis/resolwe | resolwe/flow/views/collection.py | CollectionViewSet.set_content_permissions | def set_content_permissions(self, user, obj, payload):
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"""Apply permissions to data objects and entities in ``Collection``."""
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genialis/resolwe | resolwe/flow/views/collection.py | CollectionViewSet.create | def create(self, request, *args, **kwargs):
"""Only authenticated usesr can create new collections."""
if not request.user.is_authenticated:
raise exceptions.NotFound
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genialis/resolwe | resolwe/flow/views/collection.py | CollectionViewSet.destroy | def destroy(self, request, *args, **kwargs):
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genialis/resolwe | resolwe/flow/views/collection.py | CollectionViewSet.add_data | def add_data(self, request, pk=None):
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return Response({"error": "`ids`parameter is required"}, status=status.HTTP_400_BAD_REQUEST)
missing = []
for data_id in request.data['id... | python | def add_data(self, request, pk=None):
"""Add data to collection."""
collection = self.get_object()
if 'ids' not in request.data:
return Response({"error": "`ids`parameter is required"}, status=status.HTTP_400_BAD_REQUEST)
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genialis/resolwe | resolwe/flow/views/collection.py | CollectionViewSet.remove_data | def remove_data(self, request, pk=None):
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for data_id in request.data['ids']:
... | python | def remove_data(self, request, pk=None):
"""Remove data from collection."""
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genialis/resolwe | resolwe/flow/views/collection.py | CollectionViewSet.duplicate | def duplicate(self, request, *args, **kwargs):
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queryset = get_objects_for_user(request.user, 'view_collection', Collection.o... | python | def duplicate(self, request, *args, **kwargs):
"""Duplicate (make copy of) ``Collection`` models."""
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DataONEorg/d1_python | gmn/src/d1_gmn/app/management/commands/audit-sync.py | Command.is_object_synced_to_cn | async def is_object_synced_to_cn(self, client, pid):
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genialis/resolwe | resolwe/elastic/lookup.py | Lookup.apply | def apply(self, search, field, value):
"""Apply lookup expression to search query."""
return search.query(
self.query_type( # pylint: disable=not-callable
**{
field: {
self.operator: self.get_value_query(value)
... | python | def apply(self, search, field, value):
"""Apply lookup expression to search query."""
return search.query(
self.query_type( # pylint: disable=not-callable
**{
field: {
self.operator: self.get_value_query(value)
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genialis/resolwe | resolwe/elastic/lookup.py | In.apply | def apply(self, search, field, value):
"""Apply lookup expression to search query."""
if not isinstance(value, list):
value = [x for x in value.strip().split(',') if x]
filters = [Q('match', **{field: item}) for item in value]
return search.query('bool', should=filters) | python | def apply(self, search, field, value):
"""Apply lookup expression to search query."""
if not isinstance(value, list):
value = [x for x in value.strip().split(',') if x]
filters = [Q('match', **{field: item}) for item in value]
return search.query('bool', should=filters) | [
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genialis/resolwe | resolwe/elastic/lookup.py | Exact.apply | def apply(self, search, field, value):
"""Apply lookup expression to search query."""
# We assume that the field in question has a "raw" counterpart.
return search.query('match', **{'{}.raw'.format(field): value}) | python | def apply(self, search, field, value):
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# We assume that the field in question has a "raw" counterpart.
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genialis/resolwe | resolwe/elastic/lookup.py | QueryBuilder.register_lookup | def register_lookup(self, lookup):
"""Register lookup."""
if lookup.operator in self._lookups:
raise KeyError("Lookup for operator '{}' is already registered".format(lookup.operator))
self._lookups[lookup.operator] = lookup() | python | def register_lookup(self, lookup):
"""Register lookup."""
if lookup.operator in self._lookups:
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genialis/resolwe | resolwe/elastic/lookup.py | QueryBuilder.get_lookup | def get_lookup(self, operator):
"""Look up a lookup.
:param operator: Name of the lookup operator
"""
try:
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except KeyError:
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"""Look up a lookup.
:param operator: Name of the lookup operator
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genialis/resolwe | resolwe/elastic/lookup.py | QueryBuilder.build | def build(self, search, raw_query):
"""Build query.
:param search: Search query instance
:param raw_query: Raw query arguments dictionary
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unmatched_items = {}
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to... | python | def build(self, search, raw_query):
"""Build query.
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:param raw_query: Raw query arguments dictionary
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