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hydraplatform/hydra-base | hydra_base/lib/attributes.py | get_attribute_item_groups | def get_attribute_item_groups(network_id, attr_id, **kwargs):
"""
Get all the group items in a network with a given attribute_id
"""
user_id=kwargs.get('user_id')
network_i = _get_network(network_id)
network_i.check_read_permission(user_id)
group_items_i = db.DBSession.query(AttrGroup... | python | def get_attribute_item_groups(network_id, attr_id, **kwargs):
"""
Get all the group items in a network with a given attribute_id
"""
user_id=kwargs.get('user_id')
network_i = _get_network(network_id)
network_i.check_read_permission(user_id)
group_items_i = db.DBSession.query(AttrGroup... | [
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hydraplatform/hydra-base | hydra_base/lib/attributes.py | add_attribute_group_items | def add_attribute_group_items(attributegroupitems, **kwargs):
"""
Populate attribute groups with items.
** attributegroupitems : a list of items, of the form:
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'group_id' : Y,
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hydraplatform/hydra-base | hydra_base/lib/attributes.py | delete_attribute_group_items | def delete_attribute_group_items(attributegroupitems, **kwargs):
"""
remove attribute groups items .
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```{
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'group_id' : Y,
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... | python | def delete_attribute_group_items(attributegroupitems, **kwargs):
"""
remove attribute groups items .
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hydraplatform/hydra-base | hydra_base/lib/sharing.py | share_network | def share_network(network_id, usernames, read_only, share,**kwargs):
"""
Share a network with a list of users, identified by their usernames.
The read_only flag ('Y' or 'N') must be set
to 'Y' to allow write access or sharing.
The share flat ('Y' or 'N') must be set to 'Y' to allow... | python | def share_network(network_id, usernames, read_only, share,**kwargs):
"""
Share a network with a list of users, identified by their usernames.
The read_only flag ('Y' or 'N') must be set
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hydraplatform/hydra-base | hydra_base/lib/sharing.py | unshare_network | def unshare_network(network_id, usernames,**kwargs):
"""
Un-Share a network with a list of users, identified by their usernames.
"""
user_id = kwargs.get('user_id')
net_i = _get_network(network_id)
net_i.check_share_permission(user_id)
for username in usernames:
user_i = _get_u... | python | def unshare_network(network_id, usernames,**kwargs):
"""
Un-Share a network with a list of users, identified by their usernames.
"""
user_id = kwargs.get('user_id')
net_i = _get_network(network_id)
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hydraplatform/hydra-base | hydra_base/lib/sharing.py | share_project | def share_project(project_id, usernames, read_only, share,**kwargs):
"""
Share an entire project with a list of users, identifed by
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The read_only flag ('Y' or 'N') must be set
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"""
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hydraplatform/hydra-base | hydra_base/lib/sharing.py | unshare_project | def unshare_project(project_id, usernames,**kwargs):
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Un-share a project with a list of users, identified by their usernames.
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"""
Un-share a project with a list of users, identified by their usernames.
"""
user_id = kwargs.get('user_id')
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hydraplatform/hydra-base | hydra_base/lib/sharing.py | set_project_permission | def set_project_permission(project_id, usernames, read, write, share,**kwargs):
"""
Set permissions on a project to a list of users, identifed by
their usernames.
The read flag ('Y' or 'N') sets read access, the write
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"""
Set permissions on a project to a list of users, identifed by
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hydraplatform/hydra-base | hydra_base/lib/sharing.py | set_network_permission | def set_network_permission(network_id, usernames, read, write, share,**kwargs):
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hydraplatform/hydra-base | hydra_base/lib/sharing.py | hide_dataset | def hide_dataset(dataset_id, exceptions, read, write, share,**kwargs):
"""
Hide a particular piece of data so it can only be seen by its owner.
Only an owner can hide (and unhide) data.
Data with no owner cannot be hidden.
The exceptions paramater lists the usernames of those with p... | python | def hide_dataset(dataset_id, exceptions, read, write, share,**kwargs):
"""
Hide a particular piece of data so it can only be seen by its owner.
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hydraplatform/hydra-base | hydra_base/lib/sharing.py | unhide_dataset | def unhide_dataset(dataset_id,**kwargs):
"""
Hide a particular piece of data so it can only be seen by its owner.
Only an owner can hide (and unhide) data.
Data with no owner cannot be hidden.
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"""
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hydraplatform/hydra-base | hydra_base/lib/sharing.py | get_all_project_owners | def get_all_project_owners(project_ids=None, **kwargs):
"""
Get the project owner entries for all the requested projects.
If the project_ids argument is None, return all the owner entries
for ALL projects
"""
projowner_qry = db.DBSession.query(ProjectOwner)
if project_ids is n... | python | def get_all_project_owners(project_ids=None, **kwargs):
"""
Get the project owner entries for all the requested projects.
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"""
projowner_qry = db.DBSession.query(ProjectOwner)
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hydraplatform/hydra-base | hydra_base/lib/sharing.py | get_all_network_owners | def get_all_network_owners(network_ids=None, **kwargs):
"""
Get the network owner entries for all the requested networks.
If the network_ids argument is None, return all the owner entries
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Get the network owner entries for all the requested networks.
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hydraplatform/hydra-base | hydra_base/lib/sharing.py | bulk_set_project_owners | def bulk_set_project_owners(project_owners, **kwargs):
"""
Set the project owner of multiple projects at once.
Accepts a list of JSONObjects which look like:
{
'project_id': XX,
'user_id' : YY,
'view' : 'Y'/ 'N'
'edit' : 'Y'... | python | def bulk_set_project_owners(project_owners, **kwargs):
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Set the project owner of multiple projects at once.
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hydraplatform/hydra-base | hydra_base/lib/sharing.py | bulk_set_network_owners | def bulk_set_network_owners(network_owners, **kwargs):
"""
Set the network owner of multiple networks at once.
Accepts a list of JSONObjects which look like:
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"""
Set the network owner of multiple networks at once.
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hydraplatform/hydra-base | hydra_base/lib/data.py | get_dataset | def get_dataset(dataset_id,**kwargs):
"""
Get a single dataset, by ID
"""
user_id = int(kwargs.get('user_id'))
if dataset_id is None:
return None
try:
dataset_rs = db.DBSession.query(Dataset.id,
Dataset.type,
Dataset.unit_id,
... | python | def get_dataset(dataset_id,**kwargs):
"""
Get a single dataset, by ID
"""
user_id = int(kwargs.get('user_id'))
if dataset_id is None:
return None
try:
dataset_rs = db.DBSession.query(Dataset.id,
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hydraplatform/hydra-base | hydra_base/lib/data.py | clone_dataset | def clone_dataset(dataset_id,**kwargs):
"""
Get a single dataset, by ID
"""
user_id = int(kwargs.get('user_id'))
if dataset_id is None:
return None
dataset = db.DBSession.query(Dataset).filter(
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"""
Get a single dataset, by ID
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user_id = int(kwargs.get('user_id'))
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return None
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hydraplatform/hydra-base | hydra_base/lib/data.py | get_datasets | def get_datasets(dataset_ids,**kwargs):
"""
Get a single dataset, by ID
"""
user_id = int(kwargs.get('user_id'))
datasets = []
if len(dataset_ids) == 0:
return []
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dataset_rs = db.DBSession.query(Dataset.id,
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"""
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user_id = int(kwargs.get('user_id'))
datasets = []
if len(dataset_ids) == 0:
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hydraplatform/hydra-base | hydra_base/lib/data.py | search_datasets | def search_datasets(dataset_id=None,
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unit_id=None,
scenario_id=None,
metadata_key=None,
metadata_val=None,
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metadata_key=None,
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hydraplatform/hydra-base | hydra_base/lib/data.py | update_dataset | def update_dataset(dataset_id, name, data_type, val, unit_id, metadata={}, flush=True, **kwargs):
"""
Update an existing dataset
"""
if dataset_id is None:
raise HydraError("Dataset must have an ID to be updated.")
user_id = kwargs.get('user_id')
dataset = db.DBSession.query(Datas... | python | def update_dataset(dataset_id, name, data_type, val, unit_id, metadata={}, flush=True, **kwargs):
"""
Update an existing dataset
"""
if dataset_id is None:
raise HydraError("Dataset must have an ID to be updated.")
user_id = kwargs.get('user_id')
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hydraplatform/hydra-base | hydra_base/lib/data.py | add_dataset | def add_dataset(data_type, val, unit_id=None, metadata={}, name="", user_id=None, flush=False):
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hydraplatform/hydra-base | hydra_base/lib/data.py | _bulk_insert_data | def _bulk_insert_data(bulk_data, user_id=None, source=None):
"""
Insert lots of datasets at once to reduce the number of DB interactions.
user_id indicates the user adding the data
source indicates the name of the app adding the data
both user_id and source are added as metadata
... | python | def _bulk_insert_data(bulk_data, user_id=None, source=None):
"""
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hydraplatform/hydra-base | hydra_base/lib/data.py | _get_metadata | def _get_metadata(dataset_ids):
"""
Get all the metadata for a given list of datasets
"""
metadata = []
if len(dataset_ids) == 0:
return []
if len(dataset_ids) > qry_in_threshold:
idx = 0
extent = qry_in_threshold
while idx < len(dataset_ids):
log.... | python | def _get_metadata(dataset_ids):
"""
Get all the metadata for a given list of datasets
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hydraplatform/hydra-base | hydra_base/lib/data.py | _get_datasets | def _get_datasets(dataset_ids):
"""
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"""
dataset_dict = {}
datasets = []
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idx = 0
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hydraplatform/hydra-base | hydra_base/lib/data.py | _get_collection | def _get_collection(collection_id):
"""
Get a dataset collection by ID
:param collection ID
"""
try:
collection = db.DBSession.query(DatasetCollection).filter(DatasetCollection.id==collection_id).one()
return collection
except NoResultFound:
raise ResourceNotFound... | python | def _get_collection(collection_id):
"""
Get a dataset collection by ID
:param collection ID
"""
try:
collection = db.DBSession.query(DatasetCollection).filter(DatasetCollection.id==collection_id).one()
return collection
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hydraplatform/hydra-base | hydra_base/lib/data.py | _get_collection_item | def _get_collection_item(collection_id, dataset_id):
"""
Get a single dataset collection entry by collection ID and dataset ID
:param collection ID
:param dataset ID
"""
collection_item = db.DBSession.query(DatasetCollectionItem).\
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hydraplatform/hydra-base | hydra_base/lib/data.py | add_dataset_to_collection | def add_dataset_to_collection(dataset_id, collection_id, **kwargs):
"""
Add a single dataset to a dataset collection.
"""
collection_i = _get_collection(collection_id)
collection_item = _get_collection_item(collection_id, dataset_id)
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"""
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collection_item = _get_collection_item(collection_id, dataset_id)
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hydraplatform/hydra-base | hydra_base/lib/data.py | remove_dataset_from_collection | def remove_dataset_from_collection(dataset_id, collection_id, **kwargs):
"""
Add a single dataset to a dataset collection.
"""
collection_i = _get_collection(collection_id)
collection_item = _get_collection_item(collection_id, dataset_id)
if collection_item is None:
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"""
Add a single dataset to a dataset collection.
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collection_i = _get_collection(collection_id)
collection_item = _get_collection_item(collection_id, dataset_id)
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hydraplatform/hydra-base | hydra_base/lib/data.py | check_dataset_in_collection | def check_dataset_in_collection(dataset_id, collection_id, **kwargs):
"""
Check whether a dataset is contained inside a collection
:param dataset ID
:param collection ID
:returns 'Y' or 'N'
"""
_get_collection(collection_id)
collection_item = _get_collection_item(collect... | python | def check_dataset_in_collection(dataset_id, collection_id, **kwargs):
"""
Check whether a dataset is contained inside a collection
:param dataset ID
:param collection ID
:returns 'Y' or 'N'
"""
_get_collection(collection_id)
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hydraplatform/hydra-base | hydra_base/lib/data.py | get_collections_like_name | def get_collections_like_name(collection_name,**kwargs):
"""
Get all the datasets from the collection with the specified name
"""
try:
collections = db.DBSession.query(DatasetCollection).filter(DatasetCollection.name.like("%%%s%%"%collection_name.lower())).all()
except NoResultFound:
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"""
Get all the datasets from the collection with the specified name
"""
try:
collections = db.DBSession.query(DatasetCollection).filter(DatasetCollection.name.like("%%%s%%"%collection_name.lower())).all()
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hydraplatform/hydra-base | hydra_base/lib/data.py | get_collection_datasets | def get_collection_datasets(collection_id,**kwargs):
"""
Get all the datasets from the collection with the specified name
"""
collection_datasets = db.DBSession.query(Dataset).filter(Dataset.id==DatasetCollectionItem.dataset_id,
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"""
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hydraplatform/hydra-base | hydra_base/lib/data.py | get_val_at_time | def get_val_at_time(dataset_id, timestamps,**kwargs):
"""
Given a timestamp (or list of timestamps) and some timeseries data,
return the values appropriate to the requested times.
If the timestamp is before the start of the timeseries data, return
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"""
Given a timestamp (or list of timestamps) and some timeseries data,
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hydraplatform/hydra-base | hydra_base/lib/data.py | get_multiple_vals_at_time | def get_multiple_vals_at_time(dataset_ids, timestamps,**kwargs):
"""
Given a timestamp (or list of timestamps) and a list of timeseries datasets,
return the values appropriate to the requested times.
If the timestamp is before the start of the timeseries data, return
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hydraplatform/hydra-base | hydra_base/lib/data.py | get_vals_between_times | def get_vals_between_times(dataset_id, start_time, end_time, timestep,increment,**kwargs):
"""
Retrive data between two specified times within a timeseries. The times
need not be specified in the timeseries. This function will 'fill in the blanks'.
Two types of data retrieval can be done.
... | python | def get_vals_between_times(dataset_id, start_time, end_time, timestep,increment,**kwargs):
"""
Retrive data between two specified times within a timeseries. The times
need not be specified in the timeseries. This function will 'fill in the blanks'.
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hydraplatform/hydra-base | hydra_base/lib/data.py | delete_dataset | def delete_dataset(dataset_id,**kwargs):
"""
Removes a piece of data from the DB.
CAUTION! Use with care, as this cannot be undone easily.
"""
try:
d = db.DBSession.query(Dataset).filter(Dataset.id==dataset_id).one()
except NoResultFound:
raise HydraError("Dataset %s does... | python | def delete_dataset(dataset_id,**kwargs):
"""
Removes a piece of data from the DB.
CAUTION! Use with care, as this cannot be undone easily.
"""
try:
d = db.DBSession.query(Dataset).filter(Dataset.id==dataset_id).one()
except NoResultFound:
raise HydraError("Dataset %s does... | [
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hydraplatform/hydra-base | hydra_base/lib/notes.py | get_notes | def get_notes(ref_key, ref_id, **kwargs):
"""
Get all the notes for a resource, identifed by ref_key and ref_ido.
Returns [] if no notes are found or if the resource doesn't exist.
"""
notes = db.DBSession.query(Note).filter(Note.ref_key==ref_key)
if ref_key == 'NETWORK':
notes =... | python | def get_notes(ref_key, ref_id, **kwargs):
"""
Get all the notes for a resource, identifed by ref_key and ref_ido.
Returns [] if no notes are found or if the resource doesn't exist.
"""
notes = db.DBSession.query(Note).filter(Note.ref_key==ref_key)
if ref_key == 'NETWORK':
notes =... | [
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hydraplatform/hydra-base | hydra_base/lib/notes.py | add_note | def add_note(note, **kwargs):
"""
Add a new note
"""
note_i = Note()
note_i.ref_key = note.ref_key
note_i.set_ref(note.ref_key, note.ref_id)
note_i.value = note.value
note_i.created_by = kwargs.get('user_id')
db.DBSession.add(note_i)
db.DBSession.flush()
return note_i | python | def add_note(note, **kwargs):
"""
Add a new note
"""
note_i = Note()
note_i.ref_key = note.ref_key
note_i.set_ref(note.ref_key, note.ref_id)
note_i.value = note.value
note_i.created_by = kwargs.get('user_id')
db.DBSession.add(note_i)
db.DBSession.flush()
return note_i | [
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hydraplatform/hydra-base | hydra_base/lib/notes.py | update_note | def update_note(note, **kwargs):
"""
Update a note
"""
note_i = _get_note(note.id)
if note.ref_key != note_i.ref_key:
raise HydraError("Cannot convert a %s note to a %s note. Please create a new note instead."%(note_i.ref_key, note.ref_key))
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"""
Update a note
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note_i = _get_note(note.id)
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raise HydraError("Cannot convert a %s note to a %s note. Please create a new note instead."%(note_i.ref_key, note.ref_key))
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hydraplatform/hydra-base | hydra_base/lib/notes.py | purge_note | def purge_note(note_id, **kwargs):
"""
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note_i = _get_note(note_id)
db.DBSession.delete(note_i)
db.DBSession.flush() | python | def purge_note(note_id, **kwargs):
"""
Remove a note from the DB permenantly
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note_i = _get_note(note_id)
db.DBSession.delete(note_i)
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hydraplatform/hydra-base | hydra_base/lib/service.py | login | def login(username, password, **kwargs):
"""
Login a user, returning a dict containing their user_id and session_id
This does the DB login to check the credentials, and then creates a session
so that requests from apps do not need to perform a login
args:
username (stri... | python | def login(username, password, **kwargs):
"""
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hydraplatform/hydra-base | hydra_base/lib/service.py | logout | def logout(session_id, **kwargs):
"""
Logout a user, removing their cookie if it exists and returning 'OK'
args:
session_id (string): The session ID to identify the cookie to remove
returns:
'OK'
raises:
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"""
... | python | def logout(session_id, **kwargs):
"""
Logout a user, removing their cookie if it exists and returning 'OK'
args:
session_id (string): The session ID to identify the cookie to remove
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hydraplatform/hydra-base | hydra_base/lib/service.py | get_session_user | def get_session_user(session_id, **kwargs):
"""
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args:
session_id (string): The user's ID to identify the cookie to remove
returns:
user_id (string) or None if the session does not exist
"""
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"""
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session_id (string): The user's ID to identify the cookie to remove
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hydraplatform/hydra-base | hydra_base/util/dataset_util.py | array_dim | def array_dim(arr):
"""Return the size of a multidimansional array.
"""
dim = []
while True:
try:
dim.append(len(arr))
arr = arr[0]
except TypeError:
return dim | python | def array_dim(arr):
"""Return the size of a multidimansional array.
"""
dim = []
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hydraplatform/hydra-base | hydra_base/util/dataset_util.py | check_array_struct | def check_array_struct(array):
"""
Check to ensure arrays are symmetrical, for example:
[[1, 2, 3], [1, 2]] is invalid
"""
#If a list is transformed into a numpy array and the sub elements
#of this array are still lists, then numpy failed to fully convert
#the list, meaning it is no... | python | def check_array_struct(array):
"""
Check to ensure arrays are symmetrical, for example:
[[1, 2, 3], [1, 2]] is invalid
"""
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hydraplatform/hydra-base | hydra_base/util/dataset_util.py | arr_to_vector | def arr_to_vector(arr):
"""Reshape a multidimensional array to a vector.
"""
dim = array_dim(arr)
tmp_arr = []
for n in range(len(dim) - 1):
for inner in arr:
for i in inner:
tmp_arr.append(i)
arr = tmp_arr
tmp_arr = []
return arr | python | def arr_to_vector(arr):
"""Reshape a multidimensional array to a vector.
"""
dim = array_dim(arr)
tmp_arr = []
for n in range(len(dim) - 1):
for inner in arr:
for i in inner:
tmp_arr.append(i)
arr = tmp_arr
tmp_arr = []
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hydraplatform/hydra-base | hydra_base/util/dataset_util.py | vector_to_arr | def vector_to_arr(vec, dim):
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hydraplatform/hydra-base | hydra_base/util/dataset_util.py | _get_val | def _get_val(val, full=False):
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Get the value(s) of a dataset as a single value or as 1-d list of
values. In the special case of timeseries, when a check is for time-based
criteria, you can return the entire timeseries.
"""
try:
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"""
Get the value(s) of a dataset as a single value or as 1-d list of
values. In the special case of timeseries, when a check is for time-based
criteria, you can return the entire timeseries.
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hydraplatform/hydra-base | hydra_base/util/dataset_util.py | get_restriction_as_dict | def get_restriction_as_dict(restriction_xml):
"""
turn:
::
<restrictions>
<restriction>
<type>MAXLEN</type>
<value>3</value>
</restriction>
<restriction>
<type>VALUERANGE</type>
... | python | def get_restriction_as_dict(restriction_xml):
"""
turn:
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<restrictions>
<restriction>
<type>MAXLEN</type>
<value>3</value>
</restriction>
<restriction>
<type>VALUERANGE</type>
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hydraplatform/hydra-base | hydra_base/util/dataset_util.py | validate_ENUM | def validate_ENUM(in_value, restriction):
"""
Test to ensure that the given value is contained in the provided list.
the value parameter must be either a single value or a 1-dimensional list.
All the values in this list must satisfy the ENUM
"""
value = _get_val(in_value)
if type... | python | def validate_ENUM(in_value, restriction):
"""
Test to ensure that the given value is contained in the provided list.
the value parameter must be either a single value or a 1-dimensional list.
All the values in this list must satisfy the ENUM
"""
value = _get_val(in_value)
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hydraplatform/hydra-base | hydra_base/util/dataset_util.py | validate_NUMPLACES | def validate_NUMPLACES(in_value, restriction):
"""
the value parameter must be either a single value or a 1-dimensional list.
All the values in this list must satisfy the condition
"""
#Sometimes restriction values can accidentally be put in the template <item>100</items>,
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"""
the value parameter must be either a single value or a 1-dimensional list.
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hydraplatform/hydra-base | hydra_base/util/dataset_util.py | validate_VALUERANGE | def validate_VALUERANGE(in_value, restriction):
"""
Test to ensure that a value sits between a lower and upper bound.
Parameters: A Decimal value and a tuple, containing a lower and upper bound,
both as Decimal values.
"""
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raise ValidationError("Temp... | python | def validate_VALUERANGE(in_value, restriction):
"""
Test to ensure that a value sits between a lower and upper bound.
Parameters: A Decimal value and a tuple, containing a lower and upper bound,
both as Decimal values.
"""
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hydraplatform/hydra-base | hydra_base/util/dataset_util.py | validate_DATERANGE | def validate_DATERANGE(value, restriction):
"""
Test to ensure that the times in a timeseries fall between a lower and upper bound
Parameters: A timeseries in the form [(datetime, val), (datetime, val)..]
and a tuple containing the lower and upper bound as datetime objects.
"""
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"""
Test to ensure that the times in a timeseries fall between a lower and upper bound
Parameters: A timeseries in the form [(datetime, val), (datetime, val)..]
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hydraplatform/hydra-base | hydra_base/util/dataset_util.py | validate_MAXLEN | def validate_MAXLEN(value, restriction):
"""
Test to ensure that a list has the prescribed length.
Parameters: A list and an integer, which defines the required length of
the list.
"""
#Sometimes restriction values can accidentally be put in the template <item>100</items>,
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"""
Test to ensure that a list has the prescribed length.
Parameters: A list and an integer, which defines the required length of
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"""
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hydraplatform/hydra-base | hydra_base/util/dataset_util.py | validate_LESSTHAN | def validate_LESSTHAN(in_value, restriction):
"""
Test to ensure that a value is less than a prescribed value.
Parameter: Two values, which will be compared for the difference..
"""
#Sometimes restriction values can accidentally be put in the template <item>100</items>,
#Making them a li... | python | def validate_LESSTHAN(in_value, restriction):
"""
Test to ensure that a value is less than a prescribed value.
Parameter: Two values, which will be compared for the difference..
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hydraplatform/hydra-base | hydra_base/util/dataset_util.py | validate_LESSTHANEQ | def validate_LESSTHANEQ(value, restriction):
"""
Test to ensure that a value is less than or equal to a prescribed value.
Parameter: Two values, which will be compared for the difference..
"""
#Sometimes restriction values can accidentally be put in the template <item>100</items>,
#Makin... | python | def validate_LESSTHANEQ(value, restriction):
"""
Test to ensure that a value is less than or equal to a prescribed value.
Parameter: Two values, which will be compared for the difference..
"""
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hydraplatform/hydra-base | hydra_base/util/dataset_util.py | validate_SUMTO | def validate_SUMTO(in_value, restriction):
"""
Test to ensure the values of a list sum to a specified value:
Parameters: a list of numeric values and a target to which the values
in the list must sum
"""
#Sometimes restriction values can accidentally be put in the template <item>100<... | python | def validate_SUMTO(in_value, restriction):
"""
Test to ensure the values of a list sum to a specified value:
Parameters: a list of numeric values and a target to which the values
in the list must sum
"""
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hydraplatform/hydra-base | hydra_base/util/dataset_util.py | validate_INCREASING | def validate_INCREASING(in_value, restriction):
"""
Test to ensure the values in a list are increasing.
Parameters: a list of values and None. The none is there simply
to conform with the rest of the validation routines.
"""
flat_list = _flatten_value(in_value)
previous = None
... | python | def validate_INCREASING(in_value, restriction):
"""
Test to ensure the values in a list are increasing.
Parameters: a list of values and None. The none is there simply
to conform with the rest of the validation routines.
"""
flat_list = _flatten_value(in_value)
previous = None
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hydraplatform/hydra-base | hydra_base/util/dataset_util.py | validate_EQUALTIMESTEPS | def validate_EQUALTIMESTEPS(value, restriction):
"""
Ensure that the timesteps in a timeseries are equal. If a restriction
is provided, they must be equal to the specified restriction.
Value is a pandas dataframe.
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Value is a pandas dataframe.
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2: Turn a timeseries of values into a single 1-dimensional array
"""
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1: Turn a multi-dimensional array into a 1-dimensional array
2: Turn a timeseries of values into a single 1-dimensional array
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hydraplatform/hydra-base | hydra_base/util/__init__.py | count_levels | def count_levels(value):
"""
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{} = 0
{'a':1} = 1
{'a' : {'b' : 1}} = 2
etc...
"""
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Count how many levels are in a dict:
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hydraplatform/hydra-base | hydra_base/util/__init__.py | flatten_dict | def flatten_dict(value, target_depth=1, depth=None):
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Take a hashtable with multiple nested dicts and return a
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The depth of the returned array is dictated by target_depth, defaulting to 1
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hydraplatform/hydra-base | hydra_base/util/__init__.py | to_named_tuple | def to_named_tuple(keys, values):
"""
Convert a sqlalchemy object into a named tuple
"""
values = [dbobject.__dict__[key] for key in dbobject.keys()]
tuple_object = namedtuple('DBObject', dbobject.keys())
tuple_instance = tuple_object._make(values)
return tuple_instance | python | def to_named_tuple(keys, values):
"""
Convert a sqlalchemy object into a named tuple
"""
values = [dbobject.__dict__[key] for key in dbobject.keys()]
tuple_object = namedtuple('DBObject', dbobject.keys())
tuple_instance = tuple_object._make(values)
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hydraplatform/hydra-base | hydra_base/util/__init__.py | get_val | def get_val(dataset, timestamp=None):
"""
Turn the string value of a dataset into an appropriate
value, be it a decimal value, array or time series.
If a timestamp is passed to this function,
return the values appropriate to the requested times.
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Turn the string value of a dataset into an appropriate
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hydraplatform/hydra-base | hydra_base/util/__init__.py | get_layout_as_string | def get_layout_as_string(layout):
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Take a dict or string and return a string.
The dict will be json dumped.
The string will json parsed to check for json validity. In order to deal
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Take a dict or string and return a string.
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hydraplatform/hydra-base | hydra_base/util/__init__.py | get_layout_as_dict | def get_layout_as_dict(layout):
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hydraplatform/hydra-base | hydra_base/lib/users.py | get_username | def get_username(uid,**kwargs):
"""
Return the username of a given user_id
"""
rs = db.DBSession.query(User.username).filter(User.id==uid).one()
if rs is None:
raise ResourceNotFoundError("User with ID %s not found"%uid)
return rs.username | python | def get_username(uid,**kwargs):
"""
Return the username of a given user_id
"""
rs = db.DBSession.query(User.username).filter(User.id==uid).one()
if rs is None:
raise ResourceNotFoundError("User with ID %s not found"%uid)
return rs.username | [
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hydraplatform/hydra-base | hydra_base/lib/users.py | get_usernames_like | def get_usernames_like(username,**kwargs):
"""
Return a list of usernames like the given string.
"""
checkname = "%%%s%%"%username
rs = db.DBSession.query(User.username).filter(User.username.like(checkname)).all()
return [r.username for r in rs] | python | def get_usernames_like(username,**kwargs):
"""
Return a list of usernames like the given string.
"""
checkname = "%%%s%%"%username
rs = db.DBSession.query(User.username).filter(User.username.like(checkname)).all()
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hydraplatform/hydra-base | hydra_base/lib/users.py | add_user | def add_user(user, **kwargs):
"""
Add a user
"""
#check_perm(kwargs.get('user_id'), 'add_user')
u = User()
u.username = user.username
u.display_name = user.display_name
user_id = _get_user_id(u.username)
#If the user is already there, cannot add another with
#the same ... | python | def add_user(user, **kwargs):
"""
Add a user
"""
#check_perm(kwargs.get('user_id'), 'add_user')
u = User()
u.username = user.username
u.display_name = user.display_name
user_id = _get_user_id(u.username)
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hydraplatform/hydra-base | hydra_base/lib/users.py | update_user_display_name | def update_user_display_name(user,**kwargs):
"""
Update a user's display name
"""
#check_perm(kwargs.get('user_id'), 'edit_user')
try:
user_i = db.DBSession.query(User).filter(User.id==user.id).one()
user_i.display_name = user.display_name
return user_i
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"""
Update a user's display name
"""
#check_perm(kwargs.get('user_id'), 'edit_user')
try:
user_i = db.DBSession.query(User).filter(User.id==user.id).one()
user_i.display_name = user.display_name
return user_i
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hydraplatform/hydra-base | hydra_base/lib/users.py | update_user_password | def update_user_password(new_pwd_user_id, new_password,**kwargs):
"""
Update a user's password
"""
#check_perm(kwargs.get('user_id'), 'edit_user')
try:
user_i = db.DBSession.query(User).filter(User.id==new_pwd_user_id).one()
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"""
Update a user's password
"""
#check_perm(kwargs.get('user_id'), 'edit_user')
try:
user_i = db.DBSession.query(User).filter(User.id==new_pwd_user_id).one()
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hydraplatform/hydra-base | hydra_base/lib/users.py | get_user | def get_user(uid, **kwargs):
"""
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"""
user_id=kwargs.get('user_id')
if uid is None:
uid = user_id
user_i = _get_user(uid)
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"""
Get a user by ID
"""
user_id=kwargs.get('user_id')
if uid is None:
uid = user_id
user_i = _get_user(uid)
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hydraplatform/hydra-base | hydra_base/lib/users.py | get_user_by_name | def get_user_by_name(uname,**kwargs):
"""
Get a user by username
"""
try:
user_i = db.DBSession.query(User).filter(User.username==uname).one()
return user_i
except NoResultFound:
return None | python | def get_user_by_name(uname,**kwargs):
"""
Get a user by username
"""
try:
user_i = db.DBSession.query(User).filter(User.username==uname).one()
return user_i
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hydraplatform/hydra-base | hydra_base/lib/users.py | get_user_by_id | def get_user_by_id(uid,**kwargs):
"""
Get a user by username
"""
user_id = kwargs.get('user_id')
try:
user_i = _get_user(uid)
return user_i
except NoResultFound:
return None | python | def get_user_by_id(uid,**kwargs):
"""
Get a user by username
"""
user_id = kwargs.get('user_id')
try:
user_i = _get_user(uid)
return user_i
except NoResultFound:
return None | [
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hydraplatform/hydra-base | hydra_base/lib/users.py | delete_user | def delete_user(deleted_user_id,**kwargs):
"""
Delete a user
"""
#check_perm(kwargs.get('user_id'), 'edit_user')
try:
user_i = db.DBSession.query(User).filter(User.id==deleted_user_id).one()
db.DBSession.delete(user_i)
except NoResultFound:
raise ResourceNotFoundError... | python | def delete_user(deleted_user_id,**kwargs):
"""
Delete a user
"""
#check_perm(kwargs.get('user_id'), 'edit_user')
try:
user_i = db.DBSession.query(User).filter(User.id==deleted_user_id).one()
db.DBSession.delete(user_i)
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hydraplatform/hydra-base | hydra_base/lib/users.py | add_role | def add_role(role,**kwargs):
"""
Add a new role
"""
#check_perm(kwargs.get('user_id'), 'add_role')
role_i = Role(name=role.name, code=role.code)
db.DBSession.add(role_i)
db.DBSession.flush()
return role_i | python | def add_role(role,**kwargs):
"""
Add a new role
"""
#check_perm(kwargs.get('user_id'), 'add_role')
role_i = Role(name=role.name, code=role.code)
db.DBSession.add(role_i)
db.DBSession.flush()
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hydraplatform/hydra-base | hydra_base/lib/users.py | delete_role | def delete_role(role_id,**kwargs):
"""
Delete a role
"""
#check_perm(kwargs.get('user_id'), 'edit_role')
try:
role_i = db.DBSession.query(Role).filter(Role.id==role_id).one()
db.DBSession.delete(role_i)
except InvalidRequestError:
raise ResourceNotFoundError("Role (ro... | python | def delete_role(role_id,**kwargs):
"""
Delete a role
"""
#check_perm(kwargs.get('user_id'), 'edit_role')
try:
role_i = db.DBSession.query(Role).filter(Role.id==role_id).one()
db.DBSession.delete(role_i)
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hydraplatform/hydra-base | hydra_base/lib/users.py | add_perm | def add_perm(perm,**kwargs):
"""
Add a permission
"""
#check_perm(kwargs.get('user_id'), 'add_perm')
perm_i = Perm(name=perm.name, code=perm.code)
db.DBSession.add(perm_i)
db.DBSession.flush()
return perm_i | python | def add_perm(perm,**kwargs):
"""
Add a permission
"""
#check_perm(kwargs.get('user_id'), 'add_perm')
perm_i = Perm(name=perm.name, code=perm.code)
db.DBSession.add(perm_i)
db.DBSession.flush()
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hydraplatform/hydra-base | hydra_base/lib/users.py | delete_perm | def delete_perm(perm_id,**kwargs):
"""
Delete a permission
"""
#check_perm(kwargs.get('user_id'), 'edit_perm')
try:
perm_i = db.DBSession.query(Perm).filter(Perm.id==perm_id).one()
db.DBSession.delete(perm_i)
except InvalidRequestError:
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"""
Delete a permission
"""
#check_perm(kwargs.get('user_id'), 'edit_perm')
try:
perm_i = db.DBSession.query(Perm).filter(Perm.id==perm_id).one()
db.DBSession.delete(perm_i)
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hydraplatform/hydra-base | hydra_base/lib/users.py | set_user_role | def set_user_role(new_user_id, role_id, **kwargs):
"""
Apply `role_id` to `new_user_id`
Note this function returns the `Role` instance associated with `role_id`
"""
#check_perm(kwargs.get('user_id'), 'edit_role')
try:
_get_user(new_user_id)
role_i = _get_role(role_id)
... | python | def set_user_role(new_user_id, role_id, **kwargs):
"""
Apply `role_id` to `new_user_id`
Note this function returns the `Role` instance associated with `role_id`
"""
#check_perm(kwargs.get('user_id'), 'edit_role')
try:
_get_user(new_user_id)
role_i = _get_role(role_id)
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hydraplatform/hydra-base | hydra_base/lib/users.py | delete_user_role | def delete_user_role(deleted_user_id, role_id,**kwargs):
"""
Remove a user from a role
"""
#check_perm(kwargs.get('user_id'), 'edit_role')
try:
_get_user(deleted_user_id)
_get_role(role_id)
roleuser_i = db.DBSession.query(RoleUser).filter(RoleUser.user_id==deleted_user_id... | python | def delete_user_role(deleted_user_id, role_id,**kwargs):
"""
Remove a user from a role
"""
#check_perm(kwargs.get('user_id'), 'edit_role')
try:
_get_user(deleted_user_id)
_get_role(role_id)
roleuser_i = db.DBSession.query(RoleUser).filter(RoleUser.user_id==deleted_user_id... | [
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hydraplatform/hydra-base | hydra_base/lib/users.py | set_role_perm | def set_role_perm(role_id, perm_id,**kwargs):
"""
Insert a permission into a role
"""
#check_perm(kwargs.get('user_id'), 'edit_perm')
_get_perm(perm_id)
role_i = _get_role(role_id)
roleperm_i = RolePerm(role_id=role_id, perm_id=perm_id)
role_i.roleperms.append(roleperm_i)
db.D... | python | def set_role_perm(role_id, perm_id,**kwargs):
"""
Insert a permission into a role
"""
#check_perm(kwargs.get('user_id'), 'edit_perm')
_get_perm(perm_id)
role_i = _get_role(role_id)
roleperm_i = RolePerm(role_id=role_id, perm_id=perm_id)
role_i.roleperms.append(roleperm_i)
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hydraplatform/hydra-base | hydra_base/lib/users.py | delete_role_perm | def delete_role_perm(role_id, perm_id,**kwargs):
"""
Remove a permission from a role
"""
#check_perm(kwargs.get('user_id'), 'edit_perm')
_get_perm(perm_id)
_get_role(role_id)
try:
roleperm_i = db.DBSession.query(RolePerm).filter(RolePerm.role_id==role_id, RolePerm.perm_id==perm_... | python | def delete_role_perm(role_id, perm_id,**kwargs):
"""
Remove a permission from a role
"""
#check_perm(kwargs.get('user_id'), 'edit_perm')
_get_perm(perm_id)
_get_role(role_id)
try:
roleperm_i = db.DBSession.query(RolePerm).filter(RolePerm.role_id==role_id, RolePerm.perm_id==perm_... | [
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hydraplatform/hydra-base | hydra_base/lib/users.py | update_role | def update_role(role,**kwargs):
"""
Update the role.
Used to add permissions and users to a role.
"""
#check_perm(kwargs.get('user_id'), 'edit_role')
try:
role_i = db.DBSession.query(Role).filter(Role.id==role.id).one()
role_i.name = role.name
role_i.code = role.c... | python | def update_role(role,**kwargs):
"""
Update the role.
Used to add permissions and users to a role.
"""
#check_perm(kwargs.get('user_id'), 'edit_role')
try:
role_i = db.DBSession.query(Role).filter(Role.id==role.id).one()
role_i.name = role.name
role_i.code = role.c... | [
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hydraplatform/hydra-base | hydra_base/lib/users.py | get_all_users | def get_all_users(**kwargs):
"""
Get the username & ID of all users.
Use the the filter if it has been provided
The filter has to be a list of values
"""
users_qry = db.DBSession.query(User)
filter_type = kwargs.get('filter_type')
filter_value = kwargs.get('filter_value')
... | python | def get_all_users(**kwargs):
"""
Get the username & ID of all users.
Use the the filter if it has been provided
The filter has to be a list of values
"""
users_qry = db.DBSession.query(User)
filter_type = kwargs.get('filter_type')
filter_value = kwargs.get('filter_value')
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hydraplatform/hydra-base | hydra_base/lib/users.py | get_role | def get_role(role_id,**kwargs):
"""
Get a role by its ID.
"""
try:
role = db.DBSession.query(Role).filter(Role.id==role_id).one()
return role
except NoResultFound:
raise HydraError("Role not found (role_id={})".format(role_id)) | python | def get_role(role_id,**kwargs):
"""
Get a role by its ID.
"""
try:
role = db.DBSession.query(Role).filter(Role.id==role_id).one()
return role
except NoResultFound:
raise HydraError("Role not found (role_id={})".format(role_id)) | [
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hydraplatform/hydra-base | hydra_base/lib/users.py | get_user_roles | def get_user_roles(uid,**kwargs):
"""
Get the roles for a user.
@param user_id
"""
try:
user_roles = db.DBSession.query(Role).filter(Role.id==RoleUser.role_id,
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return user_roles
except NoResult... | python | def get_user_roles(uid,**kwargs):
"""
Get the roles for a user.
@param user_id
"""
try:
user_roles = db.DBSession.query(Role).filter(Role.id==RoleUser.role_id,
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return user_roles
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hydraplatform/hydra-base | hydra_base/lib/users.py | get_user_permissions | def get_user_permissions(uid, **kwargs):
"""
Get the roles for a user.
@param user_id
"""
try:
_get_user(uid)
user_perms = db.DBSession.query(Perm).filter(Perm.id==RolePerm.perm_id,
RolePerm.role_id==Role.id,
... | python | def get_user_permissions(uid, **kwargs):
"""
Get the roles for a user.
@param user_id
"""
try:
_get_user(uid)
user_perms = db.DBSession.query(Perm).filter(Perm.id==RolePerm.perm_id,
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hydraplatform/hydra-base | hydra_base/lib/users.py | get_role_by_code | def get_role_by_code(role_code,**kwargs):
"""
Get a role by its code
"""
try:
role = db.DBSession.query(Role).filter(Role.code==role_code).one()
return role
except NoResultFound:
raise ResourceNotFoundError("Role not found (role_code={})".format(role_code)) | python | def get_role_by_code(role_code,**kwargs):
"""
Get a role by its code
"""
try:
role = db.DBSession.query(Role).filter(Role.code==role_code).one()
return role
except NoResultFound:
raise ResourceNotFoundError("Role not found (role_code={})".format(role_code)) | [
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... | Get a role by its code | [
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] | train | https://github.com/hydraplatform/hydra-base/blob/9251ff7946505f7a272c87837390acd1c435bc6e/hydra_base/lib/users.py#L425-L433 |
hydraplatform/hydra-base | hydra_base/lib/users.py | get_perm | def get_perm(perm_id,**kwargs):
"""
Get all permissions
"""
try:
perm = db.DBSession.query(Perm).filter(Perm.id==perm_id).one()
return perm
except NoResultFound:
raise ResourceNotFoundError("Permission not found (perm_id={})".format(perm_id)) | python | def get_perm(perm_id,**kwargs):
"""
Get all permissions
"""
try:
perm = db.DBSession.query(Perm).filter(Perm.id==perm_id).one()
return perm
except NoResultFound:
raise ResourceNotFoundError("Permission not found (perm_id={})".format(perm_id)) | [
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hydraplatform/hydra-base | hydra_base/lib/users.py | get_perm_by_code | def get_perm_by_code(perm_code,**kwargs):
"""
Get a permission by its code
"""
try:
perm = db.DBSession.query(Perm).filter(Perm.code==perm_code).one()
return perm
except NoResultFound:
raise ResourceNotFoundError("Permission not found (perm_code={})".format(perm_code)) | python | def get_perm_by_code(perm_code,**kwargs):
"""
Get a permission by its code
"""
try:
perm = db.DBSession.query(Perm).filter(Perm.code==perm_code).one()
return perm
except NoResultFound:
raise ResourceNotFoundError("Permission not found (perm_code={})".format(perm_code)) | [
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hydraplatform/hydra-base | hydra_base/lib/HydraTypes/Types.py | Dataframe._create_dataframe | def _create_dataframe(cls, value):
"""
Builds a dataframe from the value
"""
try:
ordered_jo = json.loads(six.text_type(value), object_pairs_hook=collections.OrderedDict)
#Pandas does not maintain the order of dicts, so we must break the dict
#up... | python | def _create_dataframe(cls, value):
"""
Builds a dataframe from the value
"""
try:
ordered_jo = json.loads(six.text_type(value), object_pairs_hook=collections.OrderedDict)
#Pandas does not maintain the order of dicts, so we must break the dict
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hydraplatform/hydra-base | hydra_base/lib/objects.py | Dataset.parse_value | def parse_value(self):
"""
Turn the value of an incoming dataset into a hydra-friendly value.
"""
try:
if self.value is None:
log.warning("Cannot parse dataset. No value specified.")
return None
# attr_data.value is a dictionar... | python | def parse_value(self):
"""
Turn the value of an incoming dataset into a hydra-friendly value.
"""
try:
if self.value is None:
log.warning("Cannot parse dataset. No value specified.")
return None
# attr_data.value is a dictionar... | [
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hydraplatform/hydra-base | hydra_base/lib/objects.py | Dataset.get_metadata_as_dict | def get_metadata_as_dict(self, user_id=None, source=None):
"""
Convert a metadata json string into a dictionary.
Args:
user_id (int): Optional: Insert user_id into the metadata if specified
source (string): Optional: Insert source (the name of the app typically) into the... | python | def get_metadata_as_dict(self, user_id=None, source=None):
"""
Convert a metadata json string into a dictionary.
Args:
user_id (int): Optional: Insert user_id into the metadata if specified
source (string): Optional: Insert source (the name of the app typically) into the... | [
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Args:
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Returns:
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hydraplatform/hydra-base | hydra_base/lib/groups.py | add_resourcegroup | def add_resourcegroup(group, network_id,**kwargs):
"""
Add a new group to a network.
"""
group_i = ResourceGroup()
group_i.name = group.name
group_i.description = group.description
group_i.status = group.status
group_i.network_id ... | python | def add_resourcegroup(group, network_id,**kwargs):
"""
Add a new group to a network.
"""
group_i = ResourceGroup()
group_i.name = group.name
group_i.description = group.description
group_i.status = group.status
group_i.network_id ... | [
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hydraplatform/hydra-base | hydra_base/lib/groups.py | delete_resourcegroup | def delete_resourcegroup(group_id,**kwargs):
"""
Add a new group to a scenario.
"""
group_i = _get_group(group_id)
#This should cascaded to delete all the group items.
db.DBSession.delete(group_i)
db.DBSession.flush()
return 'OK' | python | def delete_resourcegroup(group_id,**kwargs):
"""
Add a new group to a scenario.
"""
group_i = _get_group(group_id)
#This should cascaded to delete all the group items.
db.DBSession.delete(group_i)
db.DBSession.flush()
return 'OK' | [
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hydraplatform/hydra-base | hydra_base/lib/groups.py | update_resourcegroup | def update_resourcegroup(group,**kwargs):
"""
Add a new group to a network.
"""
group_i = _get_group(group.id)
group_i.name = group.name
group_i.description = group.description
group_i.status = group.status
db.DBSession.flush()
return gr... | python | def update_resourcegroup(group,**kwargs):
"""
Add a new group to a network.
"""
group_i = _get_group(group.id)
group_i.name = group.name
group_i.description = group.description
group_i.status = group.status
db.DBSession.flush()
return gr... | [
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hydraplatform/hydra-base | hydra_base/db/audit.py | create_sqlite_backup_db | def create_sqlite_backup_db(audit_tables):
"""
return an inspector object
"""
#we always want to create a whole new DB, so delete the old one first
#if it exists.
try:
Popen("rm %s"%(config.get('sqlite', 'backup_url')), shell=True)
logging.warn("Old sqlite backup DB removed")... | python | def create_sqlite_backup_db(audit_tables):
"""
return an inspector object
"""
#we always want to create a whole new DB, so delete the old one first
#if it exists.
try:
Popen("rm %s"%(config.get('sqlite', 'backup_url')), shell=True)
logging.warn("Old sqlite backup DB removed")... | [
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hydraplatform/hydra-base | hydra_base/db/model.py | _is_admin | def _is_admin(user_id):
"""
Is the specified user an admin
"""
user = get_session().query(User).filter(User.id==user_id).one()
if user.is_admin():
return True
else:
return False | python | def _is_admin(user_id):
"""
Is the specified user an admin
"""
user = get_session().query(User).filter(User.id==user_id).one()
if user.is_admin():
return True
else:
return False | [
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hydraplatform/hydra-base | hydra_base/db/model.py | Dataset.set_metadata | def set_metadata(self, metadata_dict):
"""
Set the metadata on a dataset
**metadata_dict**: A dictionary of metadata key-vals.
Transforms this dict into an array of metadata objects for
storage in the DB.
"""
if metadata_dict is None:
... | python | def set_metadata(self, metadata_dict):
"""
Set the metadata on a dataset
**metadata_dict**: A dictionary of metadata key-vals.
Transforms this dict into an array of metadata objects for
storage in the DB.
"""
if metadata_dict is None:
... | [
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Transforms this dict into an array of metadata objects for
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hydraplatform/hydra-base | hydra_base/db/model.py | Dataset.check_user | def check_user(self, user_id):
"""
Check whether this user can read this dataset
"""
if self.hidden == 'N':
return True
for owner in self.owners:
if int(owner.user_id) == int(user_id):
if owner.view == 'Y':
return ... | python | def check_user(self, user_id):
"""
Check whether this user can read this dataset
"""
if self.hidden == 'N':
return True
for owner in self.owners:
if int(owner.user_id) == int(user_id):
if owner.view == 'Y':
return ... | [
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