repo stringlengths 2 99 | file stringlengths 13 225 | code stringlengths 0 18.3M | file_length int64 0 18.3M | avg_line_length float64 0 1.36M | max_line_length int64 0 4.26M | extension_type stringclasses 1
value |
|---|---|---|---|---|---|---|
gwsky | gwsky-master/gwsky/para_sampler/__init__.py | from .para_sampler import ParameterSampler
from .prior_dict import PriorDictSampler
from .mass import O3aMassSampler
from .sky import uniform_sky_sampler, SHSkySampler, DipoleSkySampler | 185 | 45.5 | 68 | py |
gwsky | gwsky-master/gwsky/para_sampler/sky.py | import numpy as np
from scipy.special import lpmv, eval_legendre
from healpy.rotator import rotateDirection, dir2vec
from bilby.core.prior import Prior, Uniform, Sine, Cosine, Interped, PriorDict
from .para_sampler import ParameterSampler
from .prior_dict import PriorDictSampler
from ..utils import sh_normal_coeff, r... | 6,291 | 34.954286 | 110 | py |
wgenpatex | wgenpatex-main/model.py | import numpy as np
import torch
import torch.nn as nn
import torch.nn.functional as F
from torch.autograd import Variable
DEVICE = torch.device("cuda" if torch.cuda.is_available() else "cpu")
# Generator's convolutional blocks 2D
class Conv_block2D(nn.Module):
def __init__(self, n_ch_in, n_ch_out, m=0.1):
... | 3,143 | 33.173913 | 160 | py |
wgenpatex | wgenpatex-main/run_optim_synthesis.py | import argparse
import wgenpatex
parser = argparse.ArgumentParser()
parser.add_argument('target_image_path', help='paths of target texture image')
parser.add_argument('-s', '--size', default=None, help="size of synthetized texture [nrow, ncol] (default: target texture size)")
parser.add_argument('-w', '--patch_size', ... | 1,523 | 68.272727 | 188 | py |
wgenpatex | wgenpatex-main/wgenpatex.py | import torch
from torch import nn
from torch.autograd.variable import Variable
import matplotlib.pyplot as plt
import numpy as np
import math
import time
import model
from os import mkdir
from os.path import isdir
DEVICE = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
print(DEVICE)
def imread(img_name)... | 14,073 | 34.185 | 157 | py |
wgenpatex | wgenpatex-main/run_cnn_synthesis.py | import argparse
import wgenpatex
import model
import torch
parser = argparse.ArgumentParser()
parser.add_argument('target_image_path', help='paths of target texture image')
parser.add_argument('-w', '--patch_size', type=int,default=4, help="patch size (default: 4)")
parser.add_argument('-nmax', '--n_iter_max', type=in... | 1,562 | 54.821429 | 188 | py |
descqa | descqa-master/setup.py | #!/usr/bin/env python
"""
DESCQA: LSST DESC QA Framework for mock galaxy catalogs
Copyright (c) 2018 LSST DESC
http://opensource.org/licenses/MIT
"""
import os
from setuptools import setup
with open(os.path.join(os.path.dirname(__file__), 'descqa', 'version.py')) as f:
exec(f.read()) #pylint: disable=W0122
setup... | 1,291 | 33 | 145 | py |
descqa | descqa-master/descqa/base.py | from __future__ import division, unicode_literals, absolute_import
import os
__all__ = ['BaseValidationTest', 'TestResult']
class TestResult(object):
"""
class for passing back test result
"""
def __init__(self, score=None, summary=None, passed=False, skipped=False, inspect_only=False):
"""
... | 3,403 | 27.366667 | 105 | py |
descqa | descqa-master/descqa/readiness_test.py | from __future__ import print_function, division, unicode_literals, absolute_import
import os
import re
import fnmatch
from itertools import cycle
from collections import defaultdict, OrderedDict
import numpy as np
import numexpr as ne
from scipy.stats import norm
from .base import BaseValidationTest, TestResult
from .... | 17,354 | 40.92029 | 252 | py |
descqa | descqa-master/descqa/DensityVersusSkyPosition.py | from __future__ import unicode_literals, absolute_import, division
import os
import numpy as np
from scipy.stats import binned_statistic
from .base import BaseValidationTest, TestResult
from .plotting import plt
import healpy as hp
__all__ = ['DensityVersusSkyPosition']
def create_hp_map(ra, dec, nside):
"""
... | 2,990 | 46.47619 | 125 | py |
descqa | descqa-master/descqa/SizeDistribution.py | import os
import numpy as np
from itertools import count
import re
from .base import BaseValidationTest, TestResult
from .plotting import plt
from .utils import get_opt_binpoints
__all__ = ['SizeDistribution']
class SizeDistribution(BaseValidationTest):
"""
validation test to check the slope of the size distr... | 6,607 | 48.313433 | 107 | py |
descqa | descqa-master/descqa/basic_test.py | from __future__ import division, unicode_literals, absolute_import
import os
from builtins import str #pylint: disable=W0622
import yaml
import numpy as np
import healpy as hp
from .base import BaseValidationTest, TestResult
from .plotting import plt
__all__ = ['ListAvailableQuantities', 'SkyArea']
class ListAvailabl... | 4,516 | 39.693694 | 148 | py |
descqa | descqa-master/descqa/plotting.py | import matplotlib
mpl = matplotlib
mpl.use('Agg') # Must be before importing matplotlib.pyplot
mpl.rcParams['font.size'] = 13.0
mpl.rcParams['font.family'] = 'serif'
mpl.rcParams['mathtext.fontset'] = 'stix'
mpl.rcParams['legend.frameon'] = False
mpl.rcParams['legend.fontsize'] = 'small'
mpl.rcParams['figure.dpi'] = 2... | 696 | 29.304348 | 59 | py |
descqa | descqa-master/descqa/truth_galaxy_verification.py | from __future__ import unicode_literals, absolute_import, division
import os
import re
import numpy as np
from .base import BaseValidationTest, TestResult
from .plotting import plt
__all__ = ['TruthGalaxyVerification']
class TruthGalaxyVerification(BaseValidationTest):
"""
Verify the galaxy components of the ... | 4,557 | 41.598131 | 161 | py |
descqa | descqa-master/descqa/clf_test.py | from __future__ import unicode_literals, absolute_import, division
import os
import numpy as np
from GCR import GCRQuery
from .base import BaseValidationTest, TestResult
from .plotting import plt
__all__ = ['ConditionalLuminosityFunction']
class ConditionalLuminosityFunction(BaseValidationTest):
def __init__(sel... | 6,179 | 42.216783 | 115 | py |
descqa | descqa-master/descqa/stats.py | from __future__ import division
from builtins import range # pylint: disable=W0622
import numpy as np
from scipy.stats import chi2
def get_subvolume_indices(x, y, z, box_size, n_side):
side_size = box_size/n_side
return np.ravel_multi_index(np.floor(np.vstack((x, y, z))/side_size).astype(int), (n_side,)*3, 'w... | 2,681 | 30.928571 | 132 | py |
descqa | descqa-master/descqa/SizeStellarMassLuminosity.py | from __future__ import print_function, division, unicode_literals, absolute_import
import os
import numpy as np
import re
from GCR import GCRQuery
from scipy import interpolate
from scipy.stats import binned_statistic
try:
from itertools import zip_longest
except ImportError:
from itertools import izip_longest ... | 16,283 | 56.744681 | 166 | py |
descqa | descqa-master/descqa/shear_test.py | from __future__ import unicode_literals, absolute_import, division
import os
import time
import numpy as np
from scipy.interpolate import interp1d
from scipy.integrate import quad
from sklearn.cluster import k_means
import treecorr
import pyccl as ccl
import camb
import camb.correlations
import astropy.units as u
imp... | 17,211 | 42.574684 | 163 | py |
descqa | descqa-master/descqa/ColorDistribution.py | from __future__ import unicode_literals, absolute_import, division
import os
import re
import numpy as np
import numexpr as ne
from astropy.table import Table
from scipy.ndimage.filters import uniform_filter1d
from GCR import GCRQuery
from .base import BaseValidationTest, TestResult
from .plotting import plt
from .sta... | 22,014 | 48.250559 | 127 | py |
descqa | descqa-master/descqa/BiasVersusRedshift.py | from __future__ import print_function, division, unicode_literals, absolute_import
import os
import numpy as np
import scipy.optimize as op
import re
from GCR import GCRQuery
import pyccl as ccl
from .base import TestResult
from .CorrelationsTwoPoint import CorrelationsAngularTwoPoint
from .plotting import plt
from ... | 13,544 | 48.615385 | 128 | py |
descqa | descqa-master/descqa/EllipticityDistribution.py | from __future__ import print_function, division, unicode_literals, absolute_import
import os
try:
from itertools import zip_longest
except ImportError:
from itertools import izip_longest as zip_longest
from itertools import count
import re
import numpy as np
from scipy.interpolate import interp1d
from GCR impo... | 24,835 | 49.997947 | 192 | py |
descqa | descqa-master/descqa/utils.py | """
utility functions for descqa
"""
from __future__ import unicode_literals, division, print_function, absolute_import
import numpy as np
import healpy as hp
__all__ = [
'get_sky_volume',
'get_opt_binpoints',
'get_healpixel_footprint',
'generate_uniform_random_ra_dec',
'generate_uniform_random_ra... | 7,981 | 27.609319 | 152 | py |
descqa | descqa-master/descqa/DeltaSigmaTest.py | import os
import numpy as np
import treecorr
from scipy.interpolate import interp1d
from astropy import units as u
from astropy.coordinates import SkyCoord, search_around_sky
import astropy.constants as cst
from astropy.cosmology import WMAP7 # pylint: disable=no-name-in-module
from .base import BaseValidationTest, Tes... | 14,192 | 47.773196 | 248 | py |
descqa | descqa-master/descqa/CheckColors.py | from __future__ import print_function, unicode_literals, absolute_import, division
import os
import sys
import re
import numpy as np
import numexpr as ne
from .base import BaseValidationTest, TestResult
from .plotting import plt
from astropy.table import Table
from scipy.spatial import distance_matrix
import ot
from nu... | 19,030 | 45.079903 | 157 | py |
descqa | descqa-master/descqa/EmlineRatioTest.py | # pylint: disable=E1101,E0611,W0231,W0201
# E1101 throws errors on my setattr() stuff and astropy.units.W and astropy.units.Hz
# E0611 throws an error when importing astropy.cosmology.Planck15
# W0231 gives a warning because __init__() is not called for BaseValidationTest
# W0201 gives a warning when defining attribute... | 23,850 | 41.139576 | 221 | py |
descqa | descqa-master/descqa/version.py | __version__ = '2.0.0-0.7.0'
| 28 | 13.5 | 27 | py |
descqa | descqa-master/descqa/QuickBkgTest.py | from __future__ import unicode_literals, absolute_import, division
import os
import sqlite3
import numpy as np
from .base import BaseValidationTest, TestResult
from .plotting import plt
__all__ = ['QuickBkgTest']
def compute_bkg(image):
"""
Routine to give an estimate of the mean, median and std
of the b... | 5,339 | 34.131579 | 131 | py |
descqa | descqa-master/descqa/CorrelationsTwoPoint.py | from __future__ import print_function, division, unicode_literals, absolute_import
import os
from collections import defaultdict
import re
import numpy as np
import scipy.special as scsp
import treecorr
import healpy as hp
from sklearn.cluster import k_means
from GCR import GCRQuery
from .base import BaseValidationTes... | 37,232 | 41.796552 | 145 | py |
descqa | descqa-master/descqa/ImgPkTest.py | from __future__ import unicode_literals, absolute_import, division
import os
import numpy as np
from scipy.stats import binned_statistic, chi2
from astropy.table import Table
from .base import BaseValidationTest, TestResult
from .plotting import plt
from .utils import first, is_string_like
__all__ = ['ImgPkTest']
cla... | 5,597 | 39.273381 | 134 | py |
descqa | descqa-master/descqa/NumberDensityVersusRedshift.py | from __future__ import print_function, division, unicode_literals, absolute_import
import os
import math
import re
try:
from itertools import zip_longest
except ImportError:
from itertools import izip_longest as zip_longest
import numpy as np
from GCR import GCRQuery
from sklearn.cluster import k_means
from .... | 24,043 | 44.973231 | 145 | py |
descqa | descqa-master/descqa/StellarMassFunction.py |
from __future__ import print_function, division, unicode_literals, absolute_import
import os
try:
from itertools import zip_longest
except ImportError:
from itertools import izip_longest as zip_longest
from itertools import count
import numpy as np
from GCR import GCRQuery
from .base import BaseValidationTest,... | 15,804 | 46.893939 | 133 | py |
descqa | descqa-master/descqa/__init__.py | """
DESCQA Validation Tests
"""
from .register import *
from .base import *
from .version import __version__
| 109 | 14.714286 | 32 | py |
descqa | descqa-master/descqa/register.py | import os
import importlib
import yaml
from .base import BaseValidationTest
__all__ = ['available_validations', 'load_validation', 'load_validation_from_config_dict']
def load_yaml(yaml_file):
"""
Load *yaml_file*. Ruturn a dictionary.
"""
with open(yaml_file) as f:
config = yaml.safe_load(f... | 3,051 | 28.066667 | 126 | py |
descqa | descqa-master/descqa/ColorRedshiftTest.py | from __future__ import unicode_literals, absolute_import, division
import os
import re
import numpy as np
from scipy.stats import binned_statistic as bs
import matplotlib.colors as clr
from .base import BaseValidationTest, TestResult
from .plotting import plt
__all__ = ['ColorRedshiftTest']
class _CatalogDoesNotHaveQ... | 16,610 | 50.747664 | 175 | py |
descqa | descqa-master/descqa/StellarMassDistribution.py | import os
import numpy as np
from GCR import GCRQuery
from .base import BaseValidationTest, TestResult
from .plotting import plt
__all__ = ["StellarMassTest"]
class StellarMassTest(BaseValidationTest):
"""
This validation test looks at stellar mass distribution
of DC2 catalogs to make sure it matches... | 4,241 | 36.539823 | 120 | py |
descqa | descqa-master/descqa/CheckAstroPhoto.py | from __future__ import print_function, division
import os
import numpy as np
from scipy.stats import binned_statistic
from CatalogMatcher.match import spatial_closest # https://github.com/LSSTDESC/CatalogMatcher
from GCR import GCRQuery
from .base import BaseValidationTest, TestResult
from .plotting import plt
from ma... | 6,989 | 48.928571 | 142 | py |
descqa | descqa-master/descqa/apparent_mag_func_test.py | from __future__ import unicode_literals, absolute_import, division
import os
import re
import numpy as np
from scipy.interpolate import interp1d
from .utils import get_sky_area
from .base import BaseValidationTest, TestResult
from .plotting import plt
possible_observations = {
'HSC': {
'filename_template'... | 11,963 | 41.728571 | 131 | py |
descqa | descqa-master/descqa/example_test.py | from __future__ import unicode_literals, absolute_import, division
import os
import numpy as np
from .base import BaseValidationTest, TestResult
from .plotting import plt
__all__ = ['ExampleTest']
class ExampleTest(BaseValidationTest):
"""
An example validation test
"""
def __init__(self, **kwargs):
... | 1,841 | 29.7 | 84 | py |
descqa | descqa-master/descqa/PositionAngle.py | import os
from itertools import count
import numpy as np
import scipy.stats
from .base import BaseValidationTest, TestResult
from .plotting import plt
__all__ = ['PositionAngle']
class PositionAngle(BaseValidationTest):
"""
validation test to check that the distribution of galaxy position sizes is random.
... | 3,335 | 40.7 | 102 | py |
descqa | descqa-master/descqa/virialscale_test.py | from __future__ import unicode_literals, absolute_import, division
from .plotting import plt
from .base import BaseValidationTest, TestResult
import numpy as np
import matplotlib
from matplotlib.colors import LogNorm
from astropy.cosmology import WMAP7 as cosmo # pylint: disable=E0611
import astropy.stats as stat
im... | 11,227 | 51.223256 | 259 | py |
descqa | descqa-master/v1/descqa/base.py | import os
__all__ = ['BaseValidationTest']
class BaseValidationTest(object):
"""
very abstract class for validation test class
"""
def run_validation_test(self, catalog_instance, catalog_name, output_dir):
raise NotImplementedError
def plot_summary(self, output_file, catalog_list):
... | 1,830 | 30.568966 | 85 | py |
descqa | descqa-master/v1/descqa/ValidationTest.py | from __future__ import division, print_function
import os
from warnings import warn
import itertools
zip = itertools.izip
import numpy as np
import matplotlib
mpl = matplotlib
mpl.use('Agg') # Must be before importing matplotlib.pyplot
mpl.rcParams['font.size'] = 13.0
mpl.rcParams['font.family'] = 'serif'
mpl.rcParam... | 15,735 | 36.466667 | 164 | py |
descqa | descqa-master/v1/descqa/HaloMassFunctionTest.py | from __future__ import division, print_function
import os
import subprocess
import numpy as np
from .BinnedStellarMassFunctionTest import BinnedStellarMassFunctionTest
class HaloMassFunctionTest(BinnedStellarMassFunctionTest):
"""
validation test class object to compute halo mass function bins
"""
_p... | 5,114 | 39.595238 | 121 | py |
descqa | descqa-master/v1/descqa/CalcStats.py | from __future__ import division, print_function
import numpy as np
from scipy.stats import chi2
def get_subvolume_indices(x, y, z, box_size, n_side):
side_size = box_size/n_side
return np.ravel_multi_index(np.floor(np.vstack((x, y, z))/side_size).astype(int), (n_side,)*3, 'wrap')
def jackknife(data, jack_in... | 2,561 | 29.5 | 108 | py |
descqa | descqa-master/v1/descqa/WprpTest.py | from __future__ import division, print_function
import os
import numpy as np
from warnings import warn
from .ValidationTest import *
from helpers.CorrelationFunction import projected_correlation
class WprpTest(ValidationTest):
"""
validation test class object to compute project 2-point correlation function w... | 2,671 | 31.585366 | 107 | py |
descqa | descqa-master/v1/descqa/ColorDistributionTest.py | from __future__ import division, print_function
import os
from warnings import warn
import numpy as np
from scipy.ndimage.filters import uniform_filter1d
from .ValidationTest import TestResult, plt
from .base import BaseValidationTest
from .CalcStats import CvM_statistic
from .ComputeColorDistribution import load_SDS... | 21,099 | 43.514768 | 195 | py |
descqa | descqa-master/v1/descqa/ComputeColorDistribution.py | from __future__ import division, print_function
import numpy as np
from astropy.io import fits
from astropy.table import Table
import os
import kcorrect
from astropy.cosmology import FlatLambdaCDM
def load_SDSS(filename, colors, SDSS_kcorrection_z):
"""
Compute the CDF of SDS... | 3,610 | 32.435185 | 182 | py |
descqa | descqa-master/v1/descqa/__init__.py | # This is an empty file to make this directory a python package
"""
DESCQA Validation Tests
"""
from .register import *
__version__ = '1.1.0'
| 142 | 19.428571 | 63 | py |
descqa | descqa-master/v1/descqa/StellarMassHaloMassTest.py | from __future__ import division, print_function
import os
import subprocess
import numpy as np
from .ValidationTest import *
def mean_y_in_x_bins(y, x, bins, sorter=None):
y = np.asanyarray(y)
k = np.searchsorted(x, bins, sorter=sorter)
res = []
for i, j in zip(k[:-1], k[1:]):
if j == i:
... | 4,421 | 33.015385 | 116 | py |
descqa | descqa-master/v1/descqa/register.py | import os
import importlib
import yaml
from .base import BaseValidationTest
__all__ = ['available_validations', 'load_validation', 'load_validation_from_config_dict']
def load_yaml(yaml_file):
"""
Load *yaml_file*. Ruturn a dictionary.
"""
with open(yaml_file) as f:
config = yaml.safe_load(f... | 2,922 | 27.656863 | 126 | py |
descqa | descqa-master/v1/descqa/BinnedStellarMassFunctionTest.py | from __future__ import division, print_function
import os
import numpy as np
from .ValidationTest import *
class BinnedStellarMassFunctionTest(ValidationTest):
"""
validation test class object to compute stellar mass function bins
"""
_plot_config = dict(\
xlabel=r'$M_* \; [{\rm M}_\odot]$',... | 5,060 | 37.930769 | 125 | py |
descqa | descqa-master/v1/GCRCatalogs/YaleCAMGalaxyCatalog.py | # Yale CAM galaxy catalogue class
# Duncan Campbell
# Yale University
# February, 2016
# load modules
import os
import re
import numpy as np
import h5py
from astropy.cosmology import FlatLambdaCDM
import astropy.units as u
from .GalaxyCatalogInterface import GalaxyCatalog
__all__ = ['YaleCAMGalaxyCatalog']
class Yal... | 7,150 | 36.835979 | 100 | py |
descqa | descqa-master/v1/GCRCatalogs/MB2GalaxyCatalog.py | # Massive Black 2 galaxy catalog class
import numpy as np
from astropy.table import Table
import astropy.units as u
import astropy.cosmology
from .GalaxyCatalogInterface import GalaxyCatalog
class MB2GalaxyCatalog(GalaxyCatalog):
"""
Massive Black 2 galaxy catalog class.
"""
def __init__(self, **kwar... | 7,881 | 51.198675 | 134 | py |
descqa | descqa-master/v1/GCRCatalogs/GalaxyCatalogInterface.py | # DESCQA galaxy catalog interface. This defines the GalaxyCatalog base class
# and, on import, registers all of the available catalog readers. Convenience
# functions are defined that enable automatic detection of the appropriate
# catalog type.
# Note: right now we are working with galaxy properties as floats, with
#... | 6,439 | 38.268293 | 90 | py |
descqa | descqa-master/v1/GCRCatalogs/config.py | __all__ = ['base_catalog_dir']
base_catalog_dir = '/global/cfs/cdirs/lsst/groups/CS/descqa/catalog'
| 100 | 32.666667 | 68 | py |
descqa | descqa-master/v1/GCRCatalogs/GalacticusGalaxyCatalog.py | # Argonne galaxy catalog class.
import os
import re
import numpy as np
import h5py
import astropy.cosmology
import astropy.units as u
from .GalaxyCatalogInterface import GalaxyCatalog
class GalacticusGalaxyCatalog(GalaxyCatalog):
"""
Argonne galaxy catalog class. Uses generic quantity and filter mechanisms
... | 19,154 | 44.176887 | 113 | py |
descqa | descqa-master/v1/GCRCatalogs/SHAMGalaxyCatalog.py | # SHAM galaxy catalog class
# Contact: Yao-Yuan Mao <[email protected]>
import os
import numpy as np
from astropy.cosmology import FlatLambdaCDM
#from GalaxyCatalogInterface import GalaxyCatalog
GalaxyCatalog = object
class SHAMGalaxyCatalog(GalaxyCatalog):
"""
SHAM galaxy catalog class.
"""
def ... | 3,934 | 44.755814 | 115 | py |
descqa | descqa-master/v1/GCRCatalogs/SAGGalaxyCatalog.py | #! /usr/bin/env python
import os
import h5py
import numpy as np
import astropy.cosmology
import astropy.units as u
from .GalaxyCatalogInterface import GalaxyCatalog
class SAGGalaxyCatalog(GalaxyCatalog):
"""
Semi-Analytic Galaxies (SAG) model galaxy catalog class. Uses generic
quantity and filter mechanis... | 22,166 | 37.753497 | 120 | py |
descqa | descqa-master/v1/GCRCatalogs/__init__.py | """
DESCQA v1 reader interface
"""
from .register import *
__version__ = '1.1.1'
| 81 | 12.666667 | 26 | py |
descqa | descqa-master/v1/GCRCatalogs/iHODGalaxyCatalog.py | # Massive Black 2 galaxy catalog class
import numpy as np
import astropy.cosmology
import h5py
import astropy.units as u
from .GalaxyCatalogInterface import GalaxyCatalog
class iHODGalaxyCatalog(GalaxyCatalog):
"""
iHOD galaxy catalog class.
"""
def __init__(self, **kwargs):
fn = kwargs.get('... | 5,592 | 39.528986 | 90 | py |
descqa | descqa-master/v1/GCRCatalogs/register.py | import os
import importlib
import yaml
from .config import base_catalog_dir
__all__ = ['available_catalogs', 'get_catalog_config', 'get_available_catalogs', 'load_catalog']
def load_yaml(yaml_file):
"""
Load *yaml_file*. Ruturn a dictionary.
"""
with open(yaml_file) as f:
config = yaml.safe_... | 3,261 | 26.644068 | 117 | py |
descqa | descqa-master/descqarun/master.py | from __future__ import print_function, unicode_literals, absolute_import
import os
import sys
import shutil
import time
import json
import logging
import traceback
import importlib
import argparse
import collections
import fnmatch
import subprocess
try:
from StringIO import StringIO
except ImportError:
from io... | 18,221 | 36.64876 | 145 | py |
descqa | descqa-master/descqarun/config.py | __all__ = ['base_url']
base_url = 'https://portal.nersc.gov/cfs/lsst/descqa/v2/'
| 81 | 26.333333 | 57 | py |
descqa | descqa-master/descqarun/__init__.py | """
DESCQA Execution Script
"""
from .master import main
__version__ = '2.1.1'
| 79 | 12.333333 | 24 | py |
descqa | descqa-master/descqaweb/twopanels.py | from __future__ import unicode_literals, print_function
import os
import sys
from . import config
from .interface import DescqaRun, b64encode
__all__ = ['prepare_leftpanel', 'print_file']
def prepare_leftpanel(run, test=None, catalog=None, right=None):
try:
descqa_run = DescqaRun(run, config.root_dir)
... | 3,473 | 34.814433 | 102 | py |
descqa | descqa-master/descqaweb/main.py | from __future__ import print_function, unicode_literals
import sys
import cgi
from jinja2 import Environment, PackageLoader
from . import config
from .bigtable import prepare_bigtable
from .twopanels import prepare_leftpanel, print_file
from .matrix import prepare_matrix
__all__ = ['run']
env = Environment(loader=Pa... | 2,516 | 33.958333 | 132 | py |
descqa | descqa-master/descqaweb/config.py | from __future__ import unicode_literals
__all__ = ['site_title', 'root_dir', 'general_info', 'static_dir', 'run_per_page', 'logo_filename', 'github_url', 'months_to_search']
root_dir = '/global/cfs/cdirs/lsst/groups/CS/descqa/run/v2'
site_title = 'DESCQA (v2): LSST DESC Quality Assurance for Galaxy Catalogs'
run_per... | 1,232 | 46.423077 | 182 | py |
descqa | descqa-master/descqaweb/bigtable.py | from __future__ import unicode_literals
import html
from .interface import iter_all_runs, DescqaRun
from . import config
__all__ = ['prepare_bigtable']
try:
unicode # pylint: disable=used-before-assignment
except NameError:
unicode = str # pylint: disable=redefined-builtin
def format_status_count(status_c... | 3,735 | 40.054945 | 140 | py |
descqa | descqa-master/descqaweb/__init__.py | """
DESCQA Web Interface
"""
from .main import run
__version__ = '2.1.0'
| 73 | 11.333333 | 21 | py |
descqa | descqa-master/descqaweb/interface.py | from __future__ import unicode_literals
import os
import re
import json
import datetime
import base64
__all__ = ['b64encode', 'iter_all_runs', 'DescqaRun']
ALLOWED_EXT = {'txt', 'dat', 'csv', 'log', 'json', 'yaml', 'pdf', 'png', 'html'}
STATUS_COLORS = {'PASSED': 'green', 'SKIPPED': 'gold', 'INSPECT': 'blue', 'FAILED... | 8,045 | 31.443548 | 181 | py |
descqa | descqa-master/descqaweb/matrix.py | from __future__ import unicode_literals
import time
import html
from . import config
from .interface import iter_all_runs, DescqaRun
__all__ = ['prepare_matrix']
def find_last_descqa_run():
last_run = None
for run in iter_all_runs(config.root_dir):
descqa_run = DescqaRun(run, config.root_dir, validat... | 4,624 | 40.294643 | 148 | py |
descqa | descqa-master/tests/test_descqa_subclasses.py | import descqa
def test_subclass_name_in_config():
for validation_name, validation_config in descqa.available_validations.items():
assert 'subclass_name' in validation_config, "{}.yaml has no `subclass_name`".format(validation_name)
def test_subclass_importable():
validations = set(v['subclass_name'] f... | 491 | 43.727273 | 109 | py |
descqa | descqa-master/tests/test_descqa_utils.py | from __future__ import division
import numpy as np
from scipy.stats import chi2
import healpy as hp
from descqa.utils import *
def check_ra_dec_basic(ra, dec, n):
assert ra.size == n
assert dec.size == n
assert (ra <= 360.0).all()
assert (ra >= 0.0).all()
assert (dec <= 90.0).all()
assert (dec... | 1,327 | 29.181818 | 77 | py |
descqa | descqa-master/descqagen/app_mag_func_test/data/__init__.py | 0 | 0 | 0 | py | |
Transformers-From-Optimization | Transformers-From-Optimization-main/combination_energy.py | import torch as tc
import torch.nn as nn
import matplotlib.pyplot as plt
from tqdm import tqdm
from utils import set_random_seed
import pdb
import sklearn
import sklearn.decomposition
from matplotlib.patches import ConnectionPatch
set_random_seed(233)
def F_norm(Y):
return (Y ** 2).sum()
n = 500
d = 128
W1 = tc.... | 3,850 | 24.335526 | 125 | py |
Transformers-From-Optimization | Transformers-From-Optimization-main/divergence.py | import torch as tc
import torch.nn as nn
import matplotlib.pyplot as plt
from tqdm import tqdm
from utils import set_random_seed
import pdb
import sklearn
import sklearn.decomposition
import scipy.spatial as spt
import itertools
set_random_seed(23333)
def norm(x):
return (x ** 2).sum(-1) ** 0.5
W = tc.randn(2,2)... | 1,504 | 19.902778 | 67 | py |
Transformers-From-Optimization | Transformers-From-Optimization-main/utils.py | import random
import torch as tc
import numpy as np
def set_random_seed(seed):
random.seed(seed)
np.random.seed(seed)
tc.manual_seed(seed)
tc.cuda.manual_seed_all(seed)
tc.backends.cudnn.deterministic = True
tc.backends.cudnn.benchmark = False
| 269 | 21.5 | 42 | py |
Transformers-From-Optimization | Transformers-From-Optimization-main/apollo_circle.py | import torch as tc
import torch.nn as nn
import matplotlib.pyplot as plt
from tqdm import tqdm
from utils import set_random_seed
import pdb
import sklearn
import sklearn.decomposition
import scipy.spatial as spt
import itertools
set_random_seed(23333)
def norm(x):
return (x ** 2).sum(-1) ** 0.5
def paint(xf,xh,C... | 1,370 | 25.365385 | 81 | py |
Transformers-From-Optimization | Transformers-From-Optimization-main/energy_curve/main.py | from model import Transformer
import torch as tc
import torch.nn as nn
import torch.nn.functional as F
from fastNLP.io import IMDBLoader
from fastNLP.io import IMDBPipe
from fastNLP.embeddings import StaticEmbedding
import pdb
import pickle
from pathlib import Path
import matplotlib.pyplot as plt
from load_data import ... | 1,428 | 24.517857 | 64 | py |
Transformers-From-Optimization | Transformers-From-Optimization-main/energy_curve/paint.py | from model import Transformer
import torch as tc
import torch.nn as nn
import torch.nn.functional as F
from fastNLP.io import IMDBLoader
from fastNLP.io import IMDBPipe
from fastNLP.embeddings import StaticEmbedding
import pdb
import pickle
from pathlib import Path
import matplotlib.pyplot as plt
from load_data import ... | 2,092 | 28.069444 | 85 | py |
Transformers-From-Optimization | Transformers-From-Optimization-main/energy_curve/model.py | import torch as tc
import torch.nn as nn
import torch.nn.functional as F
import pdb
alpha_1 = 1
alpha_2 = 1
def norm2(X):
return (X ** 2).sum()
def inner(x,y):
return (x.view(-1) * y.view(-1)).sum()
idxs_cache = {}
class Attention(nn.Module):
def __init__(self , d):
super().__init__()
... | 4,459 | 21.989691 | 90 | py |
Transformers-From-Optimization | Transformers-From-Optimization-main/energy_curve/load_data.py | from model import Transformer
import torch as tc
import torch.nn as nn
import torch.nn.functional as F
from fastNLP.io import IMDBLoader , SST2Loader
from fastNLP.io import IMDBPipe , SST2Pipe
from fastNLP.embeddings import StaticEmbedding
import pdb
import pickle
from pathlib import Path
import matplotlib.pyplot as pl... | 1,638 | 29.351852 | 82 | py |
pybullet-gym | pybullet-gym-master/setup.py | from setuptools import setup, find_packages
import sys, os.path
# Don't import gym module here, since deps may not be installed
sys.path.insert(0, os.path.join(os.path.dirname(__file__), 'pybulletgym'))
VERSION = 0.1
setup_py_dir = os.path.dirname(os.path.realpath(__file__))
need_files = []
datadir = "pybulletgym/e... | 1,288 | 32.921053 | 202 | py |
pybullet-gym | pybullet-gym-master/__init__.py | 0 | 0 | 0 | py | |
pybullet-gym | pybullet-gym-master/pybulletgym/__init__.py | from pybulletgym.envs import register # this is included to trigger env loading | 80 | 80 | 80 | py |
pybullet-gym | pybullet-gym-master/pybulletgym/envs/gym_utils.py | import inspect
import os
from pybulletgym.envs.roboschool.robots.robot_bases import BodyPart
currentdir = os.path.dirname(os.path.abspath(inspect.getfile(inspect.currentframe())))
parentdir = os.path.dirname(currentdir)
os.sys.path.insert(0, parentdir)
import pybullet_data
def get_cube(p, x, y, z):
body = p.loa... | 889 | 31.962963 | 100 | py |
pybullet-gym | pybullet-gym-master/pybulletgym/envs/__init__.py | from gym.envs.registration import register
# roboschool envs
## pendula
register(
id='InvertedPendulumPyBulletEnv-v0',
entry_point='pybulletgym.envs.roboschool.envs.pendulum.inverted_pendulum_env:InvertedPendulumBulletEnv',
max_episode_steps=1000,
reward_threshold=950.0,
)
register(
id='InvertedDoublePendulumPy... | 4,367 | 26.130435 | 127 | py |
pybullet-gym | pybullet-gym-master/pybulletgym/envs/assets/__init__.py | 0 | 0 | 0 | py | |
pybullet-gym | pybullet-gym-master/pybulletgym/envs/mujoco/__init__.py | 0 | 0 | 0 | py | |
pybullet-gym | pybullet-gym-master/pybulletgym/envs/mujoco/envs/env_bases.py | import gym, gym.spaces, gym.utils, gym.utils.seeding
import numpy as np
import pybullet
from pybullet_utils import bullet_client
from pkg_resources import parse_version
class BaseBulletEnv(gym.Env):
"""
Base class for Bullet physics simulation environments in a Scene.
These environments create single-player scene... | 3,411 | 24.654135 | 91 | py |
pybullet-gym | pybullet-gym-master/pybulletgym/envs/mujoco/envs/__init__.py | 0 | 0 | 0 | py | |
pybullet-gym | pybullet-gym-master/pybulletgym/envs/mujoco/envs/manipulation/pusher_env.py | from pybulletgym.envs.mujoco.envs.env_bases import BaseBulletEnv
from pybulletgym.envs.mujoco.robots.manipulators.pusher import Pusher
from pybulletgym.envs.mujoco.scenes.scene_bases import SingleRobotEmptyScene
class PusherBulletEnv(BaseBulletEnv):
def __init__(self):
self.robot = Pusher()
BaseBu... | 2,136 | 35.844828 | 112 | py |
pybullet-gym | pybullet-gym-master/pybulletgym/envs/mujoco/envs/manipulation/reacher_env.py | from pybulletgym.envs.mujoco.envs.env_bases import BaseBulletEnv
from pybulletgym.envs.mujoco.robots.manipulators.reacher import Reacher
from pybulletgym.envs.mujoco.scenes.scene_bases import SingleRobotEmptyScene
import numpy as np
class ReacherBulletEnv(BaseBulletEnv):
def __init__(self):
self.robot = R... | 1,556 | 38.923077 | 131 | py |
pybullet-gym | pybullet-gym-master/pybulletgym/envs/mujoco/envs/manipulation/striker_env.py | from pybulletgym.envs.mujoco.envs.env_bases import BaseBulletEnv
from pybulletgym.envs.mujoco.robots.manipulators.striker import Striker
from pybulletgym.envs.mujoco.scenes.scene_bases import SingleRobotEmptyScene
import numpy as np
class StrikerBulletEnv(BaseBulletEnv):
def __init__(self):
self.robot = S... | 3,262 | 39.283951 | 176 | py |
pybullet-gym | pybullet-gym-master/pybulletgym/envs/mujoco/envs/manipulation/__init__.py | 0 | 0 | 0 | py | |
pybullet-gym | pybullet-gym-master/pybulletgym/envs/mujoco/envs/manipulation/thrower_env.py | from pybulletgym.envs.mujoco.envs.env_bases import BaseBulletEnv
from pybulletgym.envs.mujoco.robots.manipulators.thrower import Thrower
from pybulletgym.envs.mujoco.scenes.scene_bases import SingleRobotEmptyScene
import numpy as np
class ThrowerBulletEnv(BaseBulletEnv):
def __init__(self):
self.robot = T... | 2,849 | 39.140845 | 182 | py |
pybullet-gym | pybullet-gym-master/pybulletgym/envs/mujoco/envs/locomotion/ant_env.py | from pybulletgym.envs.mujoco.envs.locomotion.walker_base_env import WalkerBaseMuJoCoEnv
from pybulletgym.envs.mujoco.robots.locomotors.ant import Ant
class AntMuJoCoEnv(WalkerBaseMuJoCoEnv):
def __init__(self):
self.robot = Ant()
WalkerBaseMuJoCoEnv.__init__(self, self.robot)
| 299 | 32.333333 | 87 | py |
pybullet-gym | pybullet-gym-master/pybulletgym/envs/mujoco/envs/locomotion/walker_base_env.py | from pybulletgym.envs.mujoco.envs.env_bases import BaseBulletEnv
from pybulletgym.envs.roboschool.scenes import StadiumScene
import pybullet as p
import numpy as np
class WalkerBaseMuJoCoEnv(BaseBulletEnv):
def __init__(self, robot, render=False):
print("WalkerBase::__init__")
BaseBulletEnv.__init... | 5,349 | 44.338983 | 179 | py |
pybullet-gym | pybullet-gym-master/pybulletgym/envs/mujoco/envs/locomotion/half_cheetah_env.py | from pybulletgym.envs.mujoco.envs.locomotion.walker_base_env import WalkerBaseMuJoCoEnv
from pybulletgym.envs.mujoco.robots.locomotors.half_cheetah import HalfCheetah
import numpy as np
class HalfCheetahMuJoCoEnv(WalkerBaseMuJoCoEnv):
def __init__(self):
self.robot = HalfCheetah()
WalkerBaseMuJoCo... | 1,316 | 30.357143 | 170 | py |
pybullet-gym | pybullet-gym-master/pybulletgym/envs/mujoco/envs/locomotion/hopper_env.py | from pybulletgym.envs.mujoco.envs.locomotion.walker_base_env import WalkerBaseMuJoCoEnv
from pybulletgym.envs.mujoco.robots.locomotors.hopper import Hopper
import numpy as np
class HopperMuJoCoEnv(WalkerBaseMuJoCoEnv):
def __init__(self):
self.robot = Hopper()
WalkerBaseMuJoCoEnv.__init__(self, se... | 1,583 | 31.326531 | 170 | py |
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