Hugging Face's logo

Datasets:
pytc
/
NucWorm

Dataset card Data Studio Files
xet
Community
Dataset Preview
Duplicate
The full dataset viewer is not available (click to read why). Only showing a preview of the rows.
The dataset generation failed because of a cast error
Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 1 new columns ({'0 7 160 43'}) and 1 missing columns ({'0 0 28 48'}).

This happened while the csv dataset builder was generating data using

hf://datasets/pytc/NucWorm/calcium/nejatbakhsh20/000541_sub-20190924-02_ses-20190924_ophys_center.csv (at revision c8330dffa68adfbabf5c59411d1dd0380016cf80)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1831, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 644, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              0 7 160 43: string
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 383
              to
              {'0 0 28 48': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1456, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1055, in convert_to_parquet
                  builder.download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 894, in download_and_prepare
                  self._download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 970, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1702, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1833, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 1 new columns ({'0 7 160 43'}) and 1 missing columns ({'0 0 28 48'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/pytc/NucWorm/calcium/nejatbakhsh20/000541_sub-20190924-02_ses-20190924_ophys_center.csv (at revision c8330dffa68adfbabf5c59411d1dd0380016cf80)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)

Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.

0 0 28 48
string
0 2 40 51
0 3 20 61
0 3 26 62
0 3 77 62
0 4 23 57
0 4 41 56
0 4 45 59
0 4 49 47
0 4 49 52
0 4 63 53
0 4 85 68
0 4 87 57
0 4 93 50
0 4 100 56
0 4 101 52
0 4 129 70
0 4 133 73
0 4 136 53
0 4 147 80
0 4 148 79
0 4 161 82
0 5 6 25
0 5 49 40
0 5 53 39
0 5 59 59
0 5 83 75
0 5 89 61
0 5 92 65
0 5 92 71
0 5 92 79
0 5 98 64
0 5 98 69
0 5 105 65
0 5 108 58
0 5 116 59
0 5 118 69
0 5 120 71
0 5 123 67
0 5 127 72
0 5 148 32
0 5 166 84
0 5 175 88
0 5 207 116
0 5 213 112
0 5 220 108
0 5 221 109
0 6 22 83
0 6 50 37
0 6 60 66
0 6 69 67
0 6 91 39
0 6 101 76
0 6 105 75
0 6 107 83
0 6 113 83
0 6 117 79
0 6 139 74
0 6 209 113
0 6 212 110
0 6 231 114
0 7 29 29
0 7 39 70
0 7 40 37
0 7 53 71
0 7 61 37
0 7 73 71
0 7 92 39
0 7 94 72
0 7 103 76
0 7 111 71
0 7 113 68
0 7 115 88
0 7 124 92
0 7 132 93
0 7 144 113
0 7 165 113
0 7 191 118
0 7 194 117
0 7 234 116
0 8 31 32
0 8 63 36
0 8 83 77
0 8 86 34
0 8 97 36
0 8 103 82
0 8 106 87
0 8 112 83
0 8 116 87
0 8 119 94
0 8 121 98
0 8 125 88
0 8 129 92
0 8 130 81
0 8 132 96
0 8 136 94
0 8 140 101
0 8 163 112
0 8 165 92
0 8 187 117
0 8 242 119
End of preview.
YAML Metadata Warning: empty or missing yaml metadata in repo card (https://huggingface.co/docs/hub/datasets-cards)

nucWorm

Imaging Microscope Dataset Age Avg Shape (xyczt) Resolution (μm) Avg # Nuclei Notes
Confocal Long'09 L1 (1157,140,1,140)x28 0.12x0.12x0.12 63x oil lens
ExM Confocal in-house Adult (12800,1000,1,320)x2 0.16x0.16x0.4 40x lens, 3.3x expansion
NeuroPAL Confocal Yemini'21 Adult (243,879,3,39)x10 0.21x0.21x0.75
NeuroPAL Confocal Nejatbakhsh'20 Adult (256,512,3,21)x21 0.21x0.21x1.5
NeuroPAL Confocal Wen'20 Adult (221,461,3,28)x9 0.32x0.32x1.5
NeuroPAL Confocal Seyedolmohadesin'25 L4 (815,1023,3,23)x47 0.4x0.4x1.5
Calcium Confocal Nejatbakhsh'20 Adult (128,256,1,21,960)x21 0.27x0.27x1.5
Calcium Confocal Wen'20 Adult (?,?,1,?,?)x9 0.32x0.32x1.5
Calcium Lightsheet in-house Adult (?,?,1,?,6)x1 0.32x0.32x1.5

Acknowledgement

Downloads last month
24