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grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/ReferenceSegmenterTrainer.java
package org.grobid.trainer; import org.grobid.core.GrobidModels; import org.grobid.core.exceptions.GrobidException; import org.grobid.core.features.FeaturesVectorReferenceSegmenter; import org.grobid.trainer.sax.TEIReferenceSegmenterSaxParser; import org.grobid.core.utilities.GrobidProperties; import org.grobid.core.u...
9,264
41.695853
121
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/AbstractTrainer.java
package org.grobid.trainer; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.lang3.RandomStringUtils; import org.apache.commons.lang3.StringUtils; import org.apache.commons.lang3.tuple.ImmutablePair; import org.apache.commons.text.RandomStringGenerator; import org.grobid.core.GrobidMod...
28,320
41.270149
161
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/FigureTrainer.java
package org.grobid.trainer; import org.grobid.core.GrobidModels; import org.grobid.core.exceptions.GrobidException; import org.grobid.core.utilities.GrobidProperties; import org.grobid.core.utilities.UnicodeUtil; import org.grobid.trainer.sax.TEIFigureSaxParser; import javax.xml.parsers.SAXParser; import javax.xml.pa...
8,930
40.929577
115
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/CRFPPGenericTrainer.java
package org.grobid.trainer; import org.chasen.crfpp.CRFPPTrainer; import org.grobid.core.GrobidModel; import org.grobid.core.GrobidModels; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import java.io.File; /** * Note: Usage of CRF++ in GROBID is deprecated. * * @deprecated use WapitiTrainer or DelftTra...
2,327
27.740741
131
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/GenericTrainer.java
package org.grobid.trainer; import org.grobid.core.GrobidModel; import org.grobid.core.GrobidModels; import java.io.File; public interface GenericTrainer { void train(File template, File trainingData, File outputModel, int numThreads, GrobidModel model); void train(File template, File trainingData, File outpu...
623
33.666667
123
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/MonographTrainer.java
package org.grobid.trainer; import org.grobid.core.GrobidModels; import org.grobid.core.exceptions.GrobidException; import org.grobid.core.utilities.GrobidProperties; import org.grobid.core.utilities.UnicodeUtil; import org.grobid.trainer.sax.TEIMonographSaxParser; import javax.xml.parsers.SAXParser; import javax.xml...
6,136
36.882716
115
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/NameCitationTrainer.java
package org.grobid.trainer; import org.grobid.core.GrobidModels; import org.grobid.core.exceptions.GrobidException; import org.grobid.core.features.FeaturesVectorName; import org.grobid.core.utilities.GrobidProperties; import org.grobid.core.utilities.OffsetPosition; import org.grobid.trainer.sax.TEIAuthorSaxParser; i...
5,426
30.552326
99
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/FulltextTrainer.java
package org.grobid.trainer; import org.grobid.core.GrobidModels; import org.grobid.core.exceptions.GrobidException; import org.grobid.core.utilities.GrobidProperties; import org.grobid.core.utilities.UnicodeUtil; import org.grobid.trainer.sax.TEIFulltextSaxParser; import javax.xml.parsers.SAXParser; import javax.xml....
10,534
40.972112
144
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/WapitiTrainer.java
package org.grobid.trainer; import org.grobid.core.GrobidModel; import org.grobid.core.jni.WapitiModel; import org.grobid.core.GrobidModels; import org.grobid.trainer.SegmentationTrainer; import java.math.BigDecimal; import java.io.File; public class WapitiTrainer implements GenericTrainer { public static final...
2,534
29.178571
131
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/SegmentationTrainer.java
package org.grobid.trainer; import org.grobid.core.GrobidModels; import org.grobid.core.exceptions.GrobidException; import org.grobid.core.utilities.GrobidProperties; import org.grobid.core.utilities.UnicodeUtil; import org.grobid.trainer.sax.TEISegmentationSaxParser; import javax.xml.parsers.SAXParser; import javax....
14,845
41.907514
150
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/CitationTrainer.java
package org.grobid.trainer; import org.grobid.core.GrobidModels; import org.grobid.core.exceptions.GrobidException; import org.grobid.core.features.FeaturesVectorCitation; import org.grobid.core.utilities.GrobidProperties; import org.grobid.core.utilities.OffsetPosition; import org.grobid.trainer.sax.TEICitationSaxPar...
6,667
33.020408
102
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/DateTrainer.java
package org.grobid.trainer; import org.grobid.core.GrobidModels; import org.grobid.core.exceptions.GrobidException; import org.grobid.core.features.FeaturesVectorDate; import org.grobid.core.utilities.GrobidProperties; import org.grobid.trainer.sax.TEIDateSaxParser; import javax.xml.parsers.SAXParser; import javax.xm...
4,884
28.251497
94
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/TrainerRunner.java
package org.grobid.trainer; import org.apache.commons.lang3.StringUtils; import org.grobid.core.utilities.GrobidProperties; import java.io.File; import java.nio.file.Files; import java.nio.file.Path; import java.nio.file.Paths; import java.util.Arrays; import java.util.List; /** * Training application for training ...
7,078
40.397661
250
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/TrainerFactory.java
package org.grobid.trainer; import org.grobid.core.utilities.GrobidProperties; import org.grobid.core.GrobidModel; import org.grobid.core.engines.tagging.GrobidCRFEngine; public class TrainerFactory { public static GenericTrainer getTrainer(GrobidModel model) { switch (GrobidProperties.getGrobidCRFEngine(...
790
33.391304
143
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/ShorttextTrainer.java
package org.grobid.trainer; import org.grobid.core.GrobidModels; import org.grobid.core.exceptions.GrobidException; import org.grobid.core.utilities.GrobidProperties; import org.grobid.trainer.sax.TEIFulltextSaxParser; import javax.xml.parsers.SAXParser; import javax.xml.parsers.SAXParserFactory; import java.io.*; im...
6,074
35.377246
115
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/PatentParserTrainer.java
package org.grobid.trainer; import javax.xml.parsers.SAXParser; import javax.xml.parsers.SAXParserFactory; import java.io.*; import java.util.*; import org.grobid.core.GrobidModels; import org.grobid.core.exceptions.GrobidException; import org.grobid.core.features.FeaturesVectorReference; import org.grobid.core.sax.M...
24,744
44.739372
131
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/NameHeaderTrainer.java
package org.grobid.trainer; import org.grobid.core.GrobidModels; import org.grobid.core.exceptions.GrobidException; import org.grobid.core.features.FeaturesVectorName; import org.grobid.core.utilities.GrobidProperties; import org.grobid.core.utilities.OffsetPosition; import org.grobid.trainer.sax.TEIAuthorSaxParser; i...
5,368
30.034682
99
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/TableTrainer.java
package org.grobid.trainer; import org.grobid.core.GrobidModels; import org.grobid.core.exceptions.GrobidException; import org.grobid.core.utilities.GrobidProperties; import org.grobid.core.utilities.UnicodeUtil; import org.grobid.trainer.sax.TEIFigureSaxParser; import javax.xml.parsers.SAXParser; import javax.xml.pa...
9,108
40.784404
115
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/HeaderTrainer.java
package org.grobid.trainer; import org.grobid.core.GrobidModels; import org.grobid.core.exceptions.GrobidException; import org.grobid.core.utilities.GrobidProperties; import org.grobid.core.utilities.UnicodeUtil; import org.grobid.trainer.sax.TEIHeaderSaxParser; import javax.xml.parsers.SAXParser; import javax.xml.pa...
11,304
37.452381
115
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/evaluation/LabelStat.java
package org.grobid.trainer.evaluation; /** * Model the results for each label */ public final class LabelStat { private int falsePositive = 0; private int falseNegative = 0; private int observed = 0; // this is true positives private int expected = 0; // total expected number of items with this la...
3,805
23.397436
121
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/evaluation/LabelResult.java
package org.grobid.trainer.evaluation; import org.grobid.core.utilities.TextUtilities; public class LabelResult { private final String label; private double accuracy; private double precision; private double recall; private double f1Score; private long support; public LabelResult(String ...
1,614
20.824324
68
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/evaluation/ModelStats.java
package org.grobid.trainer.evaluation; import org.apache.commons.lang3.tuple.ImmutablePair; import org.apache.commons.lang3.tuple.Pair; import org.grobid.core.utilities.OffsetPosition; import org.grobid.core.utilities.TextUtilities; import java.util.ArrayList; import java.util.List; import java.util.Map; import java....
11,850
37.477273
113
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/evaluation/EvaluationDOIMatching.java
package org.grobid.trainer.evaluation; import com.fasterxml.jackson.core.io.JsonStringEncoder; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; import org.apache.commons.io.FileUtils; import org.grobid.core.data.BibDataSet; import org.grobid.core.data.BiblioItem; impo...
33,928
42.057107
116
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/evaluation/Stats.java
package org.grobid.trainer.evaluation; import java.util.Set; import java.util.TreeMap; import org.grobid.core.exceptions.*; import org.grobid.core.utilities.TextUtilities; /** * Contains the single statistic computation for evaluation * * This class is state full. The statistics needs to be recomputed every time ...
13,178
32.534351
124
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/evaluation/EndToEndEvaluation.java
package org.grobid.trainer.evaluation; import org.grobid.core.engines.config.GrobidAnalysisConfig; import org.grobid.core.exceptions.*; import org.grobid.core.engines.Engine; import org.grobid.core.factory.GrobidFactory; import org.grobid.core.utilities.GrobidProperties; import org.grobid.core.utilities.UnicodeUtil; i...
85,451
39.886124
479
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/evaluation/PatentEvaluation.java
package org.grobid.trainer.evaluation; import org.chasen.crfpp.Tagger; import org.grobid.core.GrobidModels; import org.grobid.core.engines.tagging.GenericTagger; import org.grobid.core.engines.tagging.TaggerFactory; import org.grobid.core.exceptions.GrobidException; import org.grobid.core.utilities.GrobidProperties; i...
55,458
50.782446
163
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/evaluation/EvaluationUtilities.java
package org.grobid.trainer.evaluation; import org.chasen.crfpp.Tagger; import org.grobid.core.engines.tagging.GenericTagger; import org.grobid.core.exceptions.GrobidException; import org.grobid.core.utilities.OffsetPosition; import org.grobid.core.utilities.Pair; import java.io.BufferedReader; import java.io.FileInpu...
6,803
33.190955
138
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/evaluation/utilities/FieldSpecification.java
package org.grobid.trainer.evaluation.utilities; import java.util.*; /** * Specification of field XML paths in different result documents for evaluation. * */ public class FieldSpecification { public String fieldName = null; public List<String> nlmPath = new ArrayList<String>(); public List<String> grobidPat...
17,613
37.458515
111
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/evaluation/utilities/NamespaceContextMap.java
package org.grobid.trainer.evaluation.utilities; import java.util.Collections; import java.util.HashMap; import java.util.HashSet; import java.util.Iterator; import java.util.Map; import java.util.Set; import javax.xml.XMLConstants; import javax.xml.namespace.NamespaceContext; /** * An implementation of <a * href="...
4,196
29.194245
107
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/TEIMonographSaxParser.java
package org.grobid.trainer.sax; import org.grobid.core.utilities.TextUtilities; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import java.util.ArrayList; import java.util.Stack; import java.util.StringTokenizer; /** * SAX parser for the TEI format for mon...
5,440
35.516779
112
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/TEIDateSaxParser.java
package org.grobid.trainer.sax; import org.grobid.core.utilities.TextUtilities; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import java.util.ArrayList; import java.util.List; /** * SAX parser for author sequences encoded in the TEI format data. * Segme...
6,396
34.148352
113
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/TEIReferenceSegmenterSaxParser.java
package org.grobid.trainer.sax; import org.grobid.core.lexicon.Lexicon; import org.grobid.core.utilities.TextUtilities; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import java.util.ArrayList; import java.util.List; import java.util.StringTokenizer; /** ...
7,065
33.637255
120
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/TEIEbookSaxParser.java
package org.grobid.trainer.sax; import org.grobid.core.utilities.TextUtilities; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import java.util.ArrayList; import java.util.Stack; import java.util.StringTokenizer; /** * SAX parser for the TEI format for ful...
5,431
35.456376
111
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/TEISegmentationSaxParser.java
package org.grobid.trainer.sax; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import java.util.Arrays; import java.util.List; import java.util.ArrayList; import java.util.StringTokenizer; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import sta...
11,526
37.295681
140
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/TEIHeaderSaxParserOCRTraining.java
package org.grobid.trainer.sax; import org.grobid.core.exceptions.GrobidException; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import java.io.IOException; import java.io.Writer; import java.util.StringTokenizer; /** * SAX parser for the TEI format heade...
10,885
38.299639
122
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/NLMHeaderSaxHandler.java
package org.grobid.trainer.sax; import org.grobid.core.data.Affiliation; import org.grobid.core.data.BiblioItem; import org.grobid.core.data.Person; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import java.util.ArrayList; /** * SAX parser for the NLM XML...
12,292
34.735465
122
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/ChemicalWordsSaxParser.java
package org.grobid.trainer.sax; import org.grobid.core.exceptions.GrobidException; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import java.util.ArrayList; import java.util.List; /** * This SAX parser process the list of words of a document and produce t...
4,987
35.676471
98
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/TEICitationSaxParser.java
package org.grobid.trainer.sax; import org.grobid.core.lexicon.Lexicon; import org.grobid.core.utilities.OffsetPosition; import org.grobid.core.utilities.TextUtilities; import org.grobid.core.utilities.UnicodeUtil; import org.grobid.core.lang.Language; import org.grobid.core.engines.label.TaggingLabel; import org.grob...
11,333
36.160656
116
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/TEIHeaderSaxParser.java
package org.grobid.trainer.sax; import org.grobid.core.utilities.TextUtilities; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import java.util.ArrayList; import java.util.List; import java.util.Arrays; import java.util.StringTokenizer; import static org.gr...
12,720
37.432024
150
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/ChemicalFormulasSaxParser.java
package org.grobid.trainer.sax; import org.grobid.core.exceptions.GrobidException; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import java.util.ArrayList; /** * This SAX parser simply records the chemical formula stand off annotations and their correspo...
5,014
40.106557
114
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/ChemicalLigandSaxParser.java
package org.grobid.trainer.sax; import org.grobid.core.exceptions.GrobidException; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import java.util.ArrayList; /** * This SAX parser simply records the chemical class name stand off annotations and their corre...
5,011
40.081967
114
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/TEIAuthorSaxParser.java
package org.grobid.trainer.sax; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import org.grobid.core.utilities.TextUtilities; import org.grobid.core.utilities.UnicodeUtil; import org.grobid.core.layout.LayoutToken; import org.grobid.core.analyzers.*; import...
6,476
36.439306
124
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/ChemicalClassNamesSaxParser.java
package org.grobid.trainer.sax; import org.grobid.core.exceptions.GrobidException; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import java.util.ArrayList; /** * This SAX parser simply records the chemical class name stand off annotations and their corre...
5,017
40.131148
114
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/TEICitationOpenEdition.java
package org.grobid.trainer.sax; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; /** * SAX parser for the TEI format for OpenEdition citation data. Convert the data into Grobid TEI format for inclusion * into the training set. * <p/> * * @author Patrice ...
7,072
30.29646
117
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/MPDL_METS_SaxParser.java
package org.grobid.trainer.sax; import org.grobid.core.data.Person; import org.grobid.core.exceptions.GrobidException; import org.grobid.core.lang.Language; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import java.io.*; import java.util.ArrayList; /** * ...
7,506
35.79902
241
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/ChemicalNameSaxParser.java
package org.grobid.trainer.sax; import org.grobid.core.exceptions.GrobidException; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import java.util.ArrayList; /** * This SAX parser simply records the chemical name stand off annotations and their correspondi...
5,005
39.699187
114
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/ChemicalSubstancesSaxParser.java
package org.grobid.trainer.sax; import org.grobid.core.exceptions.GrobidException; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import java.util.ArrayList; /** * This SAX parser simply records the chemical substance name stand off annotations and their c...
5,029
40.229508
114
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/WikiTextExtractSaxParser.java
package org.grobid.trainer.sax; import org.grobid.core.exceptions.GrobidException; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import java.io.*; import java.util.StringTokenizer; /** * SAX parser for XML Wikipedia page articles (file .hgw.xml). Grab a d...
6,585
35.588889
125
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/FieldExtractSaxHandler.java
package org.grobid.trainer.sax; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import java.util.ArrayList; /** * Utility SAX parser which extracts all the text content under a given TEI tag name or * under a specified xml path. * * @author Patrice Lopez...
1,833
24.123288
96
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/TEIFigureSaxParser.java
package org.grobid.trainer.sax; import org.grobid.core.utilities.TextUtilities; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import java.util.ArrayList; import java.util.Arrays; import java.util.List; import java.util.Stack; import java.util.StringTokenize...
6,482
30.470874
125
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/TEIFulltextSaxParser.java
package org.grobid.trainer.sax; import org.grobid.core.utilities.TextUtilities; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; import java.util.ArrayList; import java.util.List; import java.util.Stack; import java.util.StringTokenizer; import org.slf4j.Logg...
10,585
35.006803
127
java
grobid
grobid-master/grobid-trainer/src/main/java/org/grobid/trainer/sax/TEIAffiliationAddressSaxParser.java
package org.grobid.trainer.sax; import org.grobid.core.analyzers.GrobidAnalyzer; import org.grobid.core.layout.LayoutToken; import org.grobid.core.lexicon.Lexicon; import org.grobid.core.utilities.OffsetPosition; import org.grobid.core.utilities.TextUtilities; import org.xml.sax.Attributes; import org.xml.sax.SAXExcep...
9,098
35.396
104
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/GrobidModelsTest.java
package org.grobid.core; import org.grobid.core.utilities.GrobidProperties; import org.junit.BeforeClass; import org.junit.Test; import static org.hamcrest.CoreMatchers.is; import static org.junit.Assert.assertThat; public class GrobidModelsTest { @BeforeClass public static void setInitialContext() throws E...
2,691
39.787879
85
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/factory/GrobidPoolingFactoryTest.java
package org.grobid.core.factory; import org.apache.commons.pool.impl.GenericObjectPool; import org.apache.commons.pool.impl.StackObjectPool; import org.grobid.core.engines.Engine; import org.junit.Test; public class GrobidPoolingFactoryTest { @Test public void testnewPoolInstance() throws Exception { // GrobidPo...
643
29.666667
76
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/features/TestFeatures.java
package org.grobid.core.features; import org.grobid.core.lexicon.Lexicon; import org.grobid.core.utilities.GrobidProperties; import org.junit.AfterClass; import org.junit.Before; import org.junit.BeforeClass; import org.junit.Test; import static org.hamcrest.CoreMatchers.is; import static org.junit.Assert.assertEqual...
4,325
35.352941
113
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/lang/LanguageTest.java
package org.grobid.core.lang; import org.grobid.core.exceptions.GrobidException; import org.junit.Test; import static org.junit.Assert.assertNotNull; public class LanguageTest { @Test public void testLanguagesAvailableInLangdetect() { String[] langList = new String[] { "af", ...
2,002
20.084211
76
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/sax/PDFALTOAnnotationSaxParserTest.java
package org.grobid.core.sax; import org.grobid.core.document.Document; import org.grobid.core.document.DocumentSource; import org.grobid.core.layout.PDFAnnotation; import org.grobid.core.layout.LayoutToken; import org.junit.Before; import org.junit.Test; import javax.xml.parsers.SAXParser; import javax.xml.parsers.SA...
1,574
28.716981
91
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/sax/PDFALTOOutlineSaxHandlerTest.java
package org.grobid.core.sax; import org.grobid.core.document.Document; import org.grobid.core.document.DocumentSource; import org.grobid.core.document.DocumentNode; import org.junit.Before; import org.junit.Test; import javax.xml.parsers.SAXParser; import javax.xml.parsers.SAXParserFactory; import java.io.InputStrea...
6,146
54.378378
134
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/sax/CrossrefUnixrefSaxParserTest.java
package org.grobid.core.sax; import org.grobid.core.data.BiblioItem; import org.grobid.core.main.LibraryLoader; import org.junit.Before; import org.junit.BeforeClass; import org.junit.Test; import javax.xml.parsers.SAXParser; import javax.xml.parsers.SAXParserFactory; import java.io.InputStream; import static org.ha...
1,474
26.314815
101
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/sax/PDFALTOSaxHandlerTest.java
package org.grobid.core.sax; import org.grobid.core.document.Document; import org.grobid.core.document.DocumentSource; import org.grobid.core.layout.GraphicObject; import org.grobid.core.layout.LayoutToken; import org.junit.Before; import org.junit.Test; import javax.xml.parsers.SAXParser; import javax.xml.parsers.SA...
5,549
37.541667
96
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/tokenization/TaggingTokenSynchronizerTest.java
package org.grobid.core.tokenization; import org.grobid.core.GrobidModels; import org.grobid.core.layout.LayoutToken; import org.grobid.core.utilities.LayoutTokensUtil; import org.grobid.core.utilities.Pair; import org.grobid.core.utilities.GrobidProperties; import org.junit.Test; import org.junit.BeforeClass; import...
2,464
29.432099
111
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/tokenization/TaggingTokenClusterorTest.java
package org.grobid.core.tokenization; import org.apache.commons.io.IOUtils; import org.grobid.core.GrobidModels; import org.grobid.core.analyzers.GrobidAnalyzer; import org.grobid.core.engines.label.TaggingLabelImpl; import org.grobid.core.engines.label.TaggingLabels; import org.grobid.core.lang.Language; import org.g...
8,042
59.022388
826
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/test/Runner.java
package org.grobid.core.test; import org.grobid.core.factory.GrobidFactory; import org.grobid.core.lexicon.LexiconIntegrationTest; import org.junit.runner.JUnitCore; import org.junit.runner.Result; import org.junit.runner.notification.Failure; public class Runner { public static void main(String[] args) { Grobi...
4,230
23.177143
84
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/test/EngineTest.java
package org.grobid.core.test; import org.grobid.core.engines.Engine; import org.grobid.core.factory.GrobidFactory; import org.junit.AfterClass; import org.junit.BeforeClass; public abstract class EngineTest { protected static Engine engine; @BeforeClass public static void setUpClass() throws Exception { ...
492
22.47619
58
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/test/TestHeaderParser.java
package org.grobid.core.test; import org.grobid.core.data.BiblioItem; import org.grobid.core.factory.GrobidFactory; import org.grobid.core.utilities.GrobidProperties; import org.junit.AfterClass; import org.junit.Test; import java.io.File; import static org.hamcrest.CoreMatchers.is; import static org.junit.Assert.as...
2,927
32.655172
96
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/test/TestFullTextParser.java
package org.grobid.core.test; import org.apache.commons.io.FileUtils; import org.grobid.core.document.Document; import org.grobid.core.document.DocumentPiece; import org.grobid.core.document.DocumentPointer; import org.grobid.core.document.xml.XmlBuilderUtils; import org.grobid.core.engines.Engine; import org.grobid.c...
4,817
32.929577
188
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/test/TestDate.java
package org.grobid.core.test; import org.grobid.core.data.Date; import org.grobid.core.factory.GrobidFactory; import org.grobid.core.main.LibraryLoader; import org.grobid.core.utilities.GrobidProperties; import org.junit.AfterClass; import org.junit.Before; import org.junit.BeforeClass; import org.junit.Test; import ...
4,031
29.315789
74
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/test/TestCitationParser.java
package org.grobid.core.test; import org.grobid.core.data.BibDataSet; import org.grobid.core.data.BiblioItem; import org.grobid.core.factory.GrobidFactory; import org.grobid.core.main.LibraryLoader; import org.junit.*; import java.util.List; import static org.hamcrest.CoreMatchers.is; import static org.junit.Assert....
4,953
46.180952
229
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/test/TestReferencesParser.java
package org.grobid.core.test; import org.grobid.core.data.BibDataSet; import org.junit.Test; import java.io.File; import java.util.List; import static org.hamcrest.CoreMatchers.is; import static org.junit.Assert.assertNotNull; import static org.junit.Assert.assertThat; public class TestReferencesParser extends Engi...
771
26.571429
82
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/test/TestEbookParser.java
package org.grobid.core.test; import org.grobid.core.utilities.GrobidProperties; import org.junit.Ignore; @Ignore public class TestEbookParser extends EngineTest { private String newTrainingPath = null; private void getTestResourcePath() { newTrainingPath = GrobidProperties.getInstance().getTempPath().getAbsolu...
621
23.88
85
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/test/TestNameParser.java
package org.grobid.core.test; import static org.hamcrest.CoreMatchers.is; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertNotNull; import static org.junit.Assert.assertThat; import java.util.List; import org.grobid.core.data.Person; import org.grobid.core.factory.GrobidFactory; impo...
2,940
30.623656
111
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/test/TestAffiliationAddressParser.java
package org.grobid.core.test; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertNotNull; import java.util.List; import org.grobid.core.data.Affiliation; import org.grobid.core.engines.Engine; import org.grobid.core.factory.GrobidFactory; import org.junit.After; import org.junit.AfterC...
1,720
30.290909
109
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/test/TestCitationPatentParser.java
package org.grobid.core.test; import java.io.File; import java.util.ArrayList; import java.util.List; import static org.hamcrest.CoreMatchers.is; import static org.junit.Assert.assertNotNull; import static org.junit.Assert.assertThat; import static org.junit.Assert.assertEquals; import org.apache.commons.io.FileUtil...
5,679
42.030303
159
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/test/TestChemicalNameParser.java
package org.grobid.core.test; import java.io.File; import java.nio.charset.StandardCharsets; import java.util.List; import org.apache.commons.io.FileUtils; import org.grobid.core.data.ChemicalEntity; import org.grobid.core.exceptions.GrobidException; import org.junit.Ignore; @Ignore public class TestChemicalNamePars...
1,382
29.733333
114
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/utilities/SHA1Test.java
package org.grobid.core.utilities; import org.grobid.core.utilities.SHA1; import org.junit.Assert; import org.junit.Test; public class SHA1Test { @Test public void testgetSHA1() { Assert.assertEquals("Hashed value is not the expected one", "9d4e1e23bd5b727046a9e3b4b7db57bd8d6ee684", SHA1.getSHA1("pass"))...
328
18.352941
61
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/utilities/UnicodeUtilTest.java
package org.grobid.core.utilities; import org.grobid.core.analyzers.GrobidAnalyzer; import org.grobid.core.layout.LayoutToken; import org.grobid.core.test.EngineTest; import org.junit.Ignore; import org.junit.Test; import com.google.common.collect.Lists; import java.util.ArrayList; import java.util.List; import sta...
1,182
27.166667
102
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/utilities/UtilitiesTest.java
package org.grobid.core.utilities; import java.io.File; import java.io.IOException; import java.util.List; import java.util.ArrayList; import org.junit.Test; import static org.junit.Assert.*; public class UtilitiesTest { @Test public void testStringToBooleanTrue() { assertEquals( "stringToBoolean value doe...
3,547
29.586207
81
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/utilities/LayoutTokensUtilIntegrationTest.java
package org.grobid.core.utilities; import org.grobid.core.document.Document; import org.grobid.core.document.DocumentSource; import org.grobid.core.engines.Engine; import org.grobid.core.engines.config.GrobidAnalysisConfig; import org.grobid.core.main.LibraryLoader; import org.junit.BeforeClass; import org.junit.Test;...
1,604
35.477273
154
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/utilities/GrobidHomeFinderTest.java
package org.grobid.core.utilities; import org.grobid.core.exceptions.GrobidPropertyException; import org.grobid.core.main.GrobidHomeFinder; import org.junit.Test; import org.junit.After; import java.io.File; import java.util.Collections; import static org.junit.Assert.assertTrue; /** * Testing location of grobid h...
1,122
24.522727
97
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/utilities/DataSetContextExtractorTest.java
package org.grobid.core.utilities; import org.apache.commons.io.IOUtils; import org.junit.Test; import java.io.InputStream; import java.nio.charset.StandardCharsets; public class DataSetContextExtractorTest { @Test public void testRefEscapes() throws Exception { InputStream is = this.getClass().get...
517
24.9
85
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/utilities/ConsolidationIntegrationTest.java
package org.grobid.core.utilities; import org.grobid.core.data.BiblioItem; import org.grobid.core.main.LibraryLoader; import org.junit.Before; import org.junit.Ignore; import org.junit.Test; import java.util.ArrayList; import java.util.List; import static org.hamcrest.CoreMatchers.is; import static org.hamcrest.Matc...
1,204
24.104167
84
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/utilities/LayoutTokensUtilTest.java
package org.grobid.core.utilities; import com.google.common.collect.Iterables; import org.grobid.core.analyzers.GrobidAnalyzer; import org.grobid.core.layout.LayoutToken; import org.junit.Test; import java.util.List; import java.util.stream.IntStream; import static org.hamcrest.CoreMatchers.is; import static org.ham...
7,288
39.049451
115
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/utilities/GrobidPropertiesTest.java
package org.grobid.core.utilities; import org.apache.commons.lang3.StringUtils; import org.grobid.core.GrobidModel; import org.grobid.core.GrobidModels; import org.grobid.core.engines.tagging.GrobidCRFEngine; import org.grobid.core.exceptions.GrobidPropertyException; import org.junit.After; import org.junit.Before; im...
4,774
33.107143
100
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/utilities/SentenceUtilitiesTest.java
package org.grobid.core.utilities; import org.grobid.core.GrobidModels; import org.grobid.core.engines.DateParser; import org.grobid.core.lang.SentenceDetector; import org.grobid.core.lang.SentenceDetectorFactory; import org.grobid.core.lexicon.Lexicon; import org.grobid.core.main.LibraryLoader; import org.junit.Befor...
10,000
45.516279
142
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/utilities/GrobidTestUtils.java
package org.grobid.core.utilities; import org.apache.commons.lang3.tuple.Triple; import java.util.ArrayList; import java.util.List; import static org.hamcrest.collection.IsCollectionWithSize.hasSize; import static org.junit.Assert.assertThat; public class GrobidTestUtils { /** * Utility method to generate...
1,877
29.786885
129
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/utilities/TextUtilitiesTest.java
package org.grobid.core.utilities; import org.grobid.core.analyzers.GrobidAnalyzer; import org.grobid.core.analyzers.GrobidDefaultAnalyzer; import org.grobid.core.layout.LayoutToken; import org.grobid.core.test.EngineTest; import org.junit.Ignore; import org.junit.Test; import java.util.ArrayList; import java.util.Li...
19,804
47.187348
214
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/utilities/IOUtilitiesTest.java
package org.grobid.core.utilities; import java.io.File; import java.io.IOException; import java.util.List; import java.util.ArrayList; import org.junit.Test; import static org.junit.Assert.*; public class IOUtilitiesTest { @Test public void testwriteInFileANDreadFile() throws IOException { File fil...
639
25.666667
102
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/utilities/counters/GrobidTimerTest.java
package org.grobid.core.utilities.counters; import static org.junit.Assert.*; import java.util.Map; import org.junit.Test; public class GrobidTimerTest { /** * The Grobid timer. */ GrobidTimer timer; @Test public void testGrobidTimerEmptyConstructor() { timer = new GrobidTimer(); assertNotNull("The Ma...
1,686
27.59322
75
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/utilities/counters/impl/CntManagerImplTest.java
package org.grobid.core.utilities.counters.impl; import org.grobid.core.engines.label.TaggingLabels; import org.grobid.core.engines.counters.CitationParserCounters; import org.grobid.core.engines.counters.Countable; import org.grobid.core.engines.counters.FigureCounters; import org.grobid.core.utilities.GrobidProperti...
6,584
41.211538
153
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/document/TEIFormatterTest.java
package org.grobid.core.document; import org.grobid.core.analyzers.GrobidAnalyzer; import org.grobid.core.data.Note; import org.grobid.core.layout.LayoutToken; import org.grobid.core.utilities.GrobidProperties; import org.grobid.core.utilities.LayoutTokensUtil; import org.junit.BeforeClass; import org.junit.Test; imp...
1,211
28.560976
107
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/document/TEIFormatterIntegrationTest.java
package org.grobid.core.document; import org.grobid.core.data.Note; import org.grobid.core.engines.EngineParsers; import org.grobid.core.engines.config.GrobidAnalysisConfig; import org.grobid.core.main.LibraryLoader; import org.grobid.core.utilities.GrobidProperties; import org.junit.BeforeClass; import org.junit.Test...
1,372
33.325
136
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/document/DocumentTest.java
package org.grobid.core.document; import org.grobid.core.utilities.GrobidProperties; import org.junit.Before; import org.junit.BeforeClass; import org.junit.Test; import org.xml.sax.SAXParseException; import org.xml.sax.helpers.DefaultHandler; import java.io.ByteArrayOutputStream; import java.io.IOException; import j...
1,735
25.707692
92
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/visualization/TestCitationsVisualizer.java
package org.grobid.core.visualization; import org.apache.commons.io.FileUtils; import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.ObjectMapper; import org.grobid.core.document.Document; import org.grobid.core.engines.Engine; import org.grobid.core.engines.config.GrobidAnalysisConfig;...
4,080
36.1
101
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/engines/EngineTest.java
package org.grobid.core.engines; import com.google.common.collect.Lists; import fr.limsi.wapiti.SWIGTYPE_p_mdl_t; import fr.limsi.wapiti.Wapiti; import org.apache.pdfbox.pdmodel.PDDocument; import org.grobid.core.data.BibDataSet; import org.grobid.core.data.BiblioItem; import org.grobid.core.data.Date; import org.gro...
172,771
100.690406
1,865
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/engines/TaggingLabelsTestImpl.java
package org.grobid.core.engines; import org.grobid.core.GrobidModel; import org.grobid.core.GrobidModels; import org.grobid.core.engines.label.TaggingLabel; import org.grobid.core.engines.label.TaggingLabels; import org.grobid.core.utilities.GrobidProperties; import org.junit.Test; import org.junit.BeforeClass; impor...
2,724
32.641975
106
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/engines/DateParserTest.java
package org.grobid.core.engines; import org.apache.commons.lang3.tuple.Triple; import org.grobid.core.GrobidModels; import org.grobid.core.analyzers.GrobidAnalyzer; import org.grobid.core.data.Date; import org.grobid.core.features.FeaturesVectorDate; import org.grobid.core.layout.LayoutToken; import org.grobid.core.le...
10,452
37.010909
108
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/engines/SegmentationTest.java
package org.grobid.core.engines; import org.grobid.core.document.Document; import org.grobid.core.document.DocumentSource; import org.grobid.core.engines.config.GrobidAnalysisConfig; import org.grobid.core.factory.AbstractEngineFactory; import org.junit.AfterClass; import org.junit.Before; import org.junit.BeforeClass...
2,509
33.383562
177
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/engines/AffiliationAddressParserTest.java
package org.grobid.core.engines; import org.junit.Before; import org.junit.BeforeClass; import org.junit.AfterClass; import org.junit.Test; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import static org.hamcrest.Matchers.hasSize; import static org.hamcrest.Matchers.nullValue; import static org.junit.Asser...
9,834
36.681992
100
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/engines/DateParserIntegrationTest.java
package org.grobid.core.engines; import org.grobid.core.data.Date; import org.grobid.core.factory.AbstractEngineFactory; import org.junit.*; import java.util.Arrays; import java.util.List; import static org.hamcrest.CoreMatchers.is; import static org.hamcrest.CoreMatchers.nullValue; import static org.hamcrest.Matche...
10,038
33.737024
104
java
grobid
grobid-master/grobid-core/src/test/java/org/grobid/core/engines/FullTextParserTest.java
package org.grobid.core.engines; import org.apache.commons.lang3.StringUtils; import org.apache.commons.lang3.tuple.Pair; import org.grobid.core.analyzers.GrobidAnalyzer; import org.grobid.core.factory.GrobidFactory; import org.grobid.core.layout.LayoutToken; import org.grobid.core.main.LibraryLoader; import org.grobi...
27,125
102.140684
215
java