repo stringlengths 1 191 ⌀ | file stringlengths 23 351 | code stringlengths 0 5.32M | file_length int64 0 5.32M | avg_line_length float64 0 2.9k | max_line_length int64 0 288k | extension_type stringclasses 1
value |
|---|---|---|---|---|---|---|
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/crossref/CrossrefRequestListener.java | package org.grobid.core.utilities.crossref;
import org.joda.time.Duration;
import java.util.List;
/**
* Listener to catch response from a CrossrefRequest.
*
*/
public class CrossrefRequestListener<T extends Object> {
public CrossrefRequestListener() {
}
public CrossrefRequestListener(int rank) {
this.rank ... | 3,011 | 23.892562 | 118 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/crossref/WorkDeserializer.java | package org.grobid.core.utilities.crossref;
import java.util.Iterator;
import org.grobid.core.data.BiblioItem;
import org.grobid.core.data.Person;
import org.grobid.core.data.Date;
import com.fasterxml.jackson.databind.JsonNode;
import com.fasterxml.jackson.databind.node.ObjectNode;
import com.fasterxml.jackson.data... | 8,740 | 36.038136 | 95 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/glutton/GluttonClient.java | package org.grobid.core.utilities.glutton;
import java.io.IOException;
import java.net.URISyntaxException;
import java.util.Map;
import java.util.List;
import java.util.ArrayList;
import java.util.concurrent.Executors;
import java.util.concurrent.Future;
import org.apache.http.client.ClientProtocolException;
import o... | 6,606 | 39.783951 | 158 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/glutton/GluttonRequestTask.java | package org.grobid.core.utilities.glutton;
import java.util.List;
import org.grobid.core.utilities.crossref.CrossrefRequestListener;
import org.grobid.core.utilities.crossref.CrossrefRequestListener.Response;
/**
* Task to execute its request at the right time.
*
*/
public class GluttonRequestTask<T extends Objec... | 1,528 | 26.8 | 106 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/glutton/GluttonRequest.java | package org.grobid.core.utilities.glutton;
import org.grobid.core.utilities.GrobidProperties;
import java.io.IOException;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import java.util.Map;
import java.util.Map.Entry;
import java.util.Observable;
import java.util.concurrent.TimeUnit;
im... | 8,847 | 36.020921 | 135 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/matching/ReferenceMarkerMatcher.java | package org.grobid.core.utilities.matching;
import com.google.common.base.Function;
import com.google.common.base.Predicate;
import com.google.common.collect.Iterables;
import com.google.common.collect.Lists;
import org.apache.lucene.analysis.standard.ClassicAnalyzer;
import org.apache.lucene.util.Version;
import org.... | 23,282 | 47.405405 | 171 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/matching/LuceneIndexMatcher.java | package org.grobid.core.utilities.matching;
import com.google.common.base.Function;
import org.apache.lucene.analysis.Analyzer;
import org.apache.lucene.analysis.standard.ClassicAnalyzer;
import org.apache.lucene.document.Document;
import org.apache.lucene.document.Field;
import org.apache.lucene.index.DirectoryReader... | 6,522 | 33.696809 | 129 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/matching/EntityMatcherException.java | package org.grobid.core.utilities.matching;
public class EntityMatcherException extends Exception {
private static final long serialVersionUID = 6080563488720903757L;
public EntityMatcherException() {
super();
}
public EntityMatcherException(String message) {
super(message);
}
... | 508 | 22.136364 | 70 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/matching/LuceneUtil.java | package org.grobid.core.utilities.matching;
import com.google.common.base.Joiner;
import org.apache.lucene.analysis.Analyzer;
import org.apache.lucene.analysis.TokenStream;
import org.apache.lucene.analysis.standard.StandardAnalyzer;
import org.apache.lucene.analysis.tokenattributes.CharTermAttribute;
import org.apach... | 3,319 | 33.226804 | 111 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/counters/CntManager.java | package org.grobid.core.utilities.counters;
import org.grobid.core.engines.counters.Countable;
import java.io.Serializable;
import java.util.Map;
public interface CntManager extends Serializable {
void i(Countable e);
void i(Countable e, long val);
void i(String group, String name);
void i(String ... | 846 | 21.891892 | 72 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/counters/CntManagerRepresentation.java | package org.grobid.core.utilities.counters;
import java.io.IOException;
public interface CntManagerRepresentation {
String getRepresentation(CntManager cntManager) throws IOException;
}
| 192 | 23.125 | 71 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/counters/Counter.java | package org.grobid.core.utilities.counters;
import java.io.Serializable;
public interface Counter extends Serializable {
void i();
void i(long val);
long cnt();
void set(long val);
}
| 201 | 17.363636 | 47 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/counters/CntManagerSaver.java | package org.grobid.core.utilities.counters;
import java.io.IOException;
import java.io.InputStream;
import java.io.OutputStream;
public interface CntManagerSaver {
CntManager deserialize(InputStream is) throws IOException;
void serialize(CntManager cntManager, OutputStream os) throws IOException;
}
| 310 | 27.272727 | 78 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/counters/CntsMetric.java | package org.grobid.core.utilities.counters;
public interface CntsMetric {
String getMetricString(CntManager cntManager);
}
| 128 | 20.5 | 50 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/counters/GrobidTimer.java | package org.grobid.core.utilities.counters;
import java.util.Date;
import java.util.HashMap;
import java.util.Map;
/**
* GrobidTimer is a timer that can memorize multiple stop times.<br>
*
* Example of use: <code>
* GrobidTimer timer= new GrobidTimer();
* timer.start();
* timer.stop("Time1");
* timer.stop("Ti... | 4,685 | 23.154639 | 109 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/counters/impl/CntManagerFactory.java | package org.grobid.core.utilities.counters.impl;
import org.grobid.core.utilities.counters.CntManager;
public class CntManagerFactory {
public static CntManager getCntManager() {
return new CntManagerImpl();
}
public static CntManager getNoOpCntManager() {
return new NoOpCntManagerImpl();... | 329 | 22.571429 | 53 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/counters/impl/CntManagerImpl.java | package org.grobid.core.utilities.counters.impl;
import org.grobid.core.engines.counters.Countable;
import org.grobid.core.utilities.counters.CntManager;
import org.grobid.core.utilities.counters.CntsMetric;
import org.grobid.core.utilities.counters.Counter;
import java.util.HashMap;
import java.util.Map;
import java... | 8,545 | 35.365957 | 156 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/counters/impl/CounterImpl.java | package org.grobid.core.utilities.counters.impl;
import org.grobid.core.utilities.counters.Counter;
import java.util.concurrent.atomic.AtomicLong;
class CounterImpl implements Counter {
private static final long serialVersionUID = 4764636620333386314L;
private volatile AtomicLong cnt = new AtomicLong(0);
... | 1,064 | 19.480769 | 70 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/counters/impl/CntManagerSaverImpl.java | package org.grobid.core.utilities.counters.impl;
import org.grobid.core.utilities.counters.CntManager;
import org.grobid.core.utilities.counters.CntManagerSaver;
import java.io.IOException;
import java.io.InputStream;
import java.io.ObjectInputStream;
import java.io.ObjectOutput;
import java.io.ObjectOutputStream;
i... | 1,217 | 30.230769 | 104 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/counters/impl/NoOpCounterImpl.java | package org.grobid.core.utilities.counters.impl;
import org.grobid.core.utilities.counters.Counter;
class NoOpCounterImpl implements Counter {
private static final long serialVersionUID = -6891249458789932892L;
@Override
public void i() {
}
@Override
public void i(long val) {
}
@O... | 431 | 15 | 71 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/counters/impl/NoOpCntManagerImpl.java | package org.grobid.core.utilities.counters.impl;
import org.grobid.core.engines.counters.Countable;
import org.grobid.core.utilities.counters.CntManager;
import org.grobid.core.utilities.counters.CntsMetric;
import org.grobid.core.utilities.counters.Counter;
import java.util.Map;
class NoOpCntManagerImpl implements ... | 1,539 | 18.012346 | 80 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/counters/impl/CntManagerGrepRepresentation.java | package org.grobid.core.utilities.counters.impl;
import org.grobid.core.utilities.counters.CntManager;
import org.grobid.core.utilities.counters.CntManagerRepresentation;
import java.text.SimpleDateFormat;
import java.util.Date;
import java.util.Map;
import java.util.TimeZone;
public class CntManagerGrepRepresentat... | 1,202 | 33.371429 | 117 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/document/DocumentPointer.java | package org.grobid.core.document;
import com.google.common.base.Preconditions;
import com.google.common.primitives.Ints;
/**
* Class representing a pointer within a PDF document, basically a block index and then a token index within a block (not global token index)
*/
public class DocumentPointer implements Compara... | 2,194 | 29.068493 | 147 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/document/PatentDocument.java | package org.grobid.core.document;
import org.grobid.core.layout.*;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
/**
* Class for additional information for patent document.
*
*/
public class PatentDocument extends Document {
private int beginBlockPAReport = -1;
static public Pattern se... | 2,761 | 32.277108 | 152 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/document/DocumentPiece.java | package org.grobid.core.document;
public class DocumentPiece implements Comparable<DocumentPiece>{
//for easier access make them final, but public
private final DocumentPointer a;
private final DocumentPointer b;
public DocumentPiece(DocumentPointer a, DocumentPointer b) {
if (a.compareTo(b) >... | 795 | 22.411765 | 89 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/document/TEICounters.java | package org.grobid.core.document;
/**
* General debugging counters
*/
public enum TEICounters {
CITATION_FIGURE_REF_MARKER_MISSED_SUBSTITUTION, TEI_POSITION_REF_MARKERS_OFFSET_TOO_LARGE, TEI_POSITION_REF_MARKERS_TOK_NOT_FOUND, CITATION_FIGURE_REF_MARKER_SUBSTITUTED
}
| 275 | 29.666667 | 173 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/document/BasicStructureBuilder.java | package org.grobid.core.document;
import com.google.common.collect.Iterables;
import com.google.common.collect.SortedSetMultimap;
import com.google.common.collect.TreeMultimap;
import org.apache.commons.lang3.tuple.Pair;
import org.grobid.core.data.BibDataSet;
import org.grobid.core.engines.tagging.GenericTaggerUtil... | 21,556 | 39.218284 | 332 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/document/Document.java | package org.grobid.core.document;
import com.google.common.base.Function;
import com.google.common.base.Joiner;
import com.google.common.base.Predicate;
import com.google.common.collect.HashMultimap;
import com.google.common.collect.Iterables;
import com.google.common.collect.LinkedListMultimap;
import com.google.comm... | 59,349 | 36.70648 | 182 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/document/TEIFormatter.java | package org.grobid.core.document;
import com.google.common.base.Joiner;
import com.google.common.collect.Iterables;
import com.google.common.collect.Sets;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.tuple.Pair;
import org.apache.commons.lang3.StringUtils;
import nu.xom.Att... | 107,658 | 44.637558 | 148 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/document/DocumentNode.java | package org.grobid.core.document;
import java.util.ArrayList;
import java.util.List;
import org.grobid.core.layout.BoundingBox;
/**
* Class corresponding to a node of the structure of a hierarchically organized document (i.e. for a table
* of content).
*
*/
public class DocumentNode {
private Integer id = nul... | 5,010 | 24.829897 | 149 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/document/OPSService.java | package org.grobid.core.document;
import java.io.*;
import java.net.*;
import java.util.*;
import org.xml.sax.*;
import org.xml.sax.helpers.*;
import javax.xml.parsers.*;
import java.util.regex.*;
import org.grobid.core.sax.TextSaxParser;
/**
*
* Usage of the EPO OPS service for online interactive version of p... | 4,755 | 31.8 | 177 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/document/DocumentSource.java | package org.grobid.core.document;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.SystemUtils;
import org.grobid.core.exceptions.GrobidException;
import org.grobid.core.exceptions.GrobidExceptionStatus;
import org.grobid.core.exceptions.GrobidResourceException;
import org.grobid.core.proce... | 16,378 | 39.144608 | 245 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/document/xml/XmlBuilderUtils.java | package org.grobid.core.document.xml;
import com.google.common.base.Function;
import com.google.common.base.Joiner;
import com.google.common.collect.Iterables;
import nu.xom.Attribute;
import nu.xom.Builder;
import nu.xom.Document;
import nu.xom.Element;
import nu.xom.Text;
import nu.xom.Node;
import nu.xom.ParsingExc... | 3,976 | 31.333333 | 101 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/document/xml/NodesIterator.java | package org.grobid.core.document.xml;
import nu.xom.Node;
import nu.xom.Nodes;
import java.util.Iterator;
import java.util.NoSuchElementException;
public class NodesIterator implements Iterable<Node>, Iterator<Node> {
private Nodes nodes;
private int cur;
public NodesIterator(Nodes nodes) {
this... | 801 | 18.095238 | 70 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/document/xml/NodeChildrenIterator.java | package org.grobid.core.document.xml;
import com.google.common.base.Predicate;
import com.google.common.collect.Iterables;
import nu.xom.Element;
import nu.xom.Node;
import nu.xom.Text;
import java.util.Arrays;
import java.util.HashSet;
import java.util.Iterator;
import java.util.NoSuchElementException;
import java.u... | 1,898 | 25.746479 | 177 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/visualization/CitationsVisualizer.java | package org.grobid.core.visualization;
import com.fasterxml.jackson.core.JsonFactory;
import com.fasterxml.jackson.core.JsonGenerator;
import com.google.common.collect.Multimap;
import net.sf.saxon.trans.XPathException;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.StringUtils... | 34,028 | 42.349045 | 155 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/visualization/BlockVisualizer.java | package org.grobid.core.visualization;
import com.google.common.base.Predicate;
import com.google.common.collect.HashMultimap;
import com.google.common.collect.Iterables;
import com.google.common.collect.Lists;
import com.google.common.collect.Multimap;
import net.sf.saxon.om.Item;
import net.sf.saxon.om.SequenceItera... | 4,397 | 36.913793 | 141 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/visualization/FigureTableVisualizer.java | package org.grobid.core.visualization;
import com.google.common.collect.Lists;
import net.sf.saxon.om.Item;
import net.sf.saxon.om.SequenceIterator;
import net.sf.saxon.trans.XPathException;
import org.apache.commons.io.FileUtils;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.grobid.core.data.Figure;
import ... | 9,879 | 37.745098 | 176 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/visualization/AnnotationUtil.java | package org.grobid.core.visualization;
import org.apache.pdfbox.cos.COSArray;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.PDPage;
import org.apache.pdfbox.pdmodel.PDPageContentStream;
import org.apache.pdfbox.pdmodel.common.PDRectangle;
import org.apache.pdfbox.pdmodel.graphics.color.... | 6,720 | 35.928571 | 129 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/exceptions/GrobidExceptionStatus.java | package org.grobid.core.exceptions;
public enum GrobidExceptionStatus {
BAD_INPUT_DATA,
TAGGING_ERROR,
PARSING_ERROR,
TIMEOUT,
TOO_MANY_BLOCKS,
NO_BLOCKS,
PDFALTO_CONVERSION_FAILURE,
TOO_MANY_TOKENS,
GENERAL
}
| 247 | 16.714286 | 35 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/exceptions/GrobidPropertyException.java | package org.grobid.core.exceptions;
public class GrobidPropertyException extends GrobidException {
private static final long serialVersionUID = -3337770841815682150L;
public GrobidPropertyException() {
super();
}
public GrobidPropertyException(String message) {
super(message);
}
... | 513 | 21.347826 | 71 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/exceptions/GrobidException.java | package org.grobid.core.exceptions;
public class GrobidException extends RuntimeException {
private GrobidExceptionStatus status = GrobidExceptionStatus.GENERAL;
private static final long serialVersionUID = -3337770841815682150L;
public GrobidException() {
super();
}
public GrobidExcepti... | 1,582 | 26.77193 | 106 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/exceptions/GrobidResourceException.java | package org.grobid.core.exceptions;
public class GrobidResourceException extends GrobidException {
private static final long serialVersionUID = -3337770841815682150L;
public GrobidResourceException() {
super();
}
public GrobidResourceException(String message) {
super(message);
}
... | 513 | 21.347826 | 71 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/layout/PDFAnnotation.java | package org.grobid.core.layout;
import java.util.ArrayList;
import java.util.List;
/**
* Class for representing an annotation present in a PDF source file. Annotations are area in the PDF document
* associated with an action (URI for external web link, goto for internal document link).
*
*/
public class PDFAnnot... | 4,479 | 26.317073 | 111 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/layout/BoundingBox.java | package org.grobid.core.layout;
import com.fasterxml.jackson.core.JsonGenerator;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.io.IOException;
/**
* Represents a bounding box to identify area in the original PDF
*/
public class BoundingBox implements Comparable {
private static final Lo... | 8,551 | 27.697987 | 133 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/layout/Page.java | package org.grobid.core.layout;
import java.util.*;
/**
* Class for representing a page.
*
*/
public class Page {
private List<Block> blocks = null;
private double width = 0.0;
private double height = 0.0;
private int number = -1;
private int pageLengthChar = 0;
private BoundingBox mainArea... | 1,391 | 17.810811 | 51 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/layout/Cluster.java | package org.grobid.core.layout;
import java.util.ArrayList;
import java.util.List;
/**
* Class for representing cluster of document layout elements,
* typically all blocks having the same font parameters.
*
*/
public class Cluster {
private List<Block> blocks = null;
private List<Integer> blocks2 = null;
... | 1,804 | 18.619565 | 62 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/layout/LayoutToken.java | package org.grobid.core.layout;
import org.grobid.core.utilities.UnicodeUtil;
import org.grobid.core.engines.label.TaggingLabel;
import java.io.Serializable;
import java.util.ArrayList;
import java.util.List;
/**
* Class for representing the layout information associated to a PDF object.
*
*/
public class LayoutT... | 6,980 | 21.446945 | 78 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/layout/VectorGraphicBoxCalculator.java | package org.grobid.core.layout;
import com.google.common.base.Predicate;
import com.google.common.collect.HashMultimap;
import com.google.common.collect.Iterables;
import com.google.common.collect.LinkedHashMultimap;
import com.google.common.collect.Lists;
import com.google.common.collect.Multimap;
import net.sf.saxon... | 5,215 | 38.515152 | 137 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/layout/GraphicObjectType.java | package org.grobid.core.layout;
/**
* Type of extracted graphic objects
*/
public enum GraphicObjectType {
UNKNOWN,
BITMAP,
VECTOR,
VECTOR_BOX
}
| 164 | 12.75 | 36 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/layout/GraphicObject.java | package org.grobid.core.layout;
import java.io.File;
/**
* Class for representing graphical objects occurring within a document.
*
*/
public class GraphicObject {
private String filePath = null;
private GraphicObjectType type = GraphicObjectType.UNKNOWN;
// position in the global tokenization
pri... | 4,898 | 22.440191 | 101 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/layout/Block.java | package org.grobid.core.layout;
import java.util.ArrayList;
import java.util.List;
/**
* Class for representing and exchanging a document block. A block is defined here relatively to
* some properties in the document layout.
*/
public class Block {
private String text = null;
private BoundingBox boundingBo... | 5,154 | 20.84322 | 96 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/layout/LayoutTokenization.java | package org.grobid.core.layout;
import java.util.ArrayList;
import java.util.List;
/**
* Class for representing a tokenization of document section where tokens include layout attributes.
* Once built, it is possible to iterate through the string tokens only ignoring the layout information or
* through the layout t... | 1,762 | 24.185714 | 106 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/CitationParser.java | package org.grobid.core.engines;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.grobid.core.GrobidModels;
import org.grobid.core.data.BibDataSet;
import org.grobid.core.data.BiblioItem;
import org.grobid.core.data.Date;
import org.grobid.core.document.D... | 44,474 | 44.945248 | 143 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/EngineParsers.java | package org.grobid.core.engines;
import org.grobid.core.engines.entities.ChemicalParser;
import org.grobid.core.engines.patent.ReferenceExtractor;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.io.Closeable;
import java.io.IOException;
public class EngineParsers implements Closeable {
publi... | 8,349 | 29.363636 | 85 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/ReferenceSegmenterParser.java | package org.grobid.core.engines;
import com.google.common.base.Function;
import com.google.common.collect.Lists;
import com.google.common.collect.Sets;
import org.grobid.core.GrobidModels;
import org.grobid.core.document.Document;
import org.grobid.core.document.DocumentPiece;
import org.grobid.core.document.DocumentP... | 33,948 | 35.582974 | 141 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/ModelMap.java | package org.grobid.core.engines;
import org.chasen.crfpp.Model;
import org.chasen.crfpp.Tagger;
import org.grobid.core.GrobidModel;
import org.grobid.core.GrobidModels;
import org.grobid.core.exceptions.GrobidException;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.io.File;
import java.util.Has... | 2,781 | 23.839286 | 100 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/AffiliationAddressParser.java | package org.grobid.core.engines;
import org.chasen.crfpp.Tagger;
import org.grobid.core.GrobidModels;
import org.grobid.core.data.Affiliation;
import org.grobid.core.exceptions.GrobidException;
import org.grobid.core.features.FeaturesVectorAffiliationAddress;
import org.grobid.core.layout.LayoutToken;
import org.grobi... | 53,208 | 44.361466 | 138 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/Engine.java | package org.grobid.core.engines;
import org.apache.commons.lang3.tuple.Pair;
import org.grobid.core.data.Affiliation;
import org.grobid.core.data.BibDataSet;
import org.grobid.core.data.BiblioItem;
import org.grobid.core.data.ChemicalEntity;
import org.grobid.core.data.PatentItem;
import org.grobid.core.data.Person;
... | 49,526 | 43.659152 | 142 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/DateParser.java | package org.grobid.core.engines;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.StringUtils;
import org.grobid.core.GrobidModel;
import org.grobid.core.GrobidModels;
import org.grobid.core.data.Date;
import org.grobid.core.engines.label.TaggingLabel;
import org.grobid.core.engi... | 24,864 | 37.550388 | 191 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/Segmentation.java | package org.grobid.core.engines;
import eugfc.imageio.plugins.PNMRegistry;
import org.apache.commons.io.FileUtils;
import org.grobid.core.GrobidModels;
import org.grobid.core.document.BasicStructureBuilder;
import org.grobid.core.document.Document;
import org.grobid.core.document.DocumentSource;
import org.grobid.core... | 49,637 | 41.865285 | 199 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/HeaderParser.java | package org.grobid.core.engines;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.tuple.ImmutablePair;
import org.apache.commons.lang3.tuple.Pair;
import org.grobid.core.GrobidModels;
import org.grobid.core.data.BiblioItem;
import org.grobid.core.data.Date;
import org.grobid.core.data.Keywo... | 67,033 | 45.746165 | 199 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/FigureParser.java | package org.grobid.core.engines;
import org.grobid.core.GrobidModels;
import org.grobid.core.data.Figure;
import org.grobid.core.engines.label.TaggingLabel;
import org.grobid.core.engines.tagging.GenericTaggerUtils;
import org.grobid.core.exceptions.GrobidException;
import org.grobid.core.layout.LayoutToken;
import or... | 13,600 | 39.120944 | 118 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/AbstractParser.java | package org.grobid.core.engines;
import org.grobid.core.GrobidModel;
import org.grobid.core.analyzers.GrobidAnalyzer;
import org.grobid.core.engines.tagging.*;
import org.grobid.core.utilities.counters.CntManager;
import org.grobid.core.utilities.counters.impl.CntManagerFactory;
import org.slf4j.Logger;
import org.slf... | 1,948 | 31.483333 | 117 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/FullTextParser.java | package org.grobid.core.engines;
import com.google.common.collect.Iterables;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.tuple.Pair;
import org.apache.commons.io.FileUtils;
import java.nio.charset.StandardCharsets;
import org.g... | 118,064 | 43.772469 | 186 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/ProcessEngine.java | package org.grobid.core.engines;
import org.apache.commons.io.FileUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.pdfbox.pdmodel.PDDocument;
import org.grobid.core.data.*;
import org.grobid.core.engines.config.GrobidAnalysisConfig;
import org.grobid.core.exceptions.GrobidResourceException;
import... | 30,600 | 43.607872 | 134 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/TableParser.java | package org.grobid.core.engines;
import org.grobid.core.GrobidModels;
import org.grobid.core.data.Table;
import org.grobid.core.engines.label.TaggingLabel;
import org.grobid.core.engines.tagging.GenericTaggerUtils;
import org.grobid.core.exceptions.GrobidException;
import org.grobid.core.layout.LayoutToken;
import org... | 15,933 | 40.06701 | 135 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/AuthorParser.java | package org.grobid.core.engines;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.grobid.core.GrobidModels;
import org.grobid.core.data.Person;
import org.grobid.core.engines.tagging.GenericTagger;
import org.grobid.core.engines.tagging.TaggerFactory;
imp... | 25,193 | 41.485666 | 154 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/MonographParser.java | package org.grobid.core.engines;
import eugfc.imageio.plugins.PNMRegistry;
import org.apache.commons.io.FileUtils;
import org.grobid.core.GrobidModels;
import org.grobid.core.document.BasicStructureBuilder;
import org.grobid.core.document.Document;
import org.grobid.core.document.DocumentNode;
import org.grobid.core.d... | 31,627 | 43.050139 | 199 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/config/GrobidAnalysisConfig.java | package org.grobid.core.engines.config;
import java.io.File;
import java.util.List;
import org.grobid.core.analyzers.Analyzer;
/**
* A class representing the runtime configuration values needed in the analysis chain
* TODO: clean up the docs
* consolidateHeader - the consolidation option allows GROBID to explo... | 8,791 | 31.442804 | 135 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/config/InvalidGrobidAnalysisConfig.java | package org.grobid.core.engines.config;
/**
* Exception for invalid configs
*/
public class InvalidGrobidAnalysisConfig extends RuntimeException {
public InvalidGrobidAnalysisConfig(String message) {
super(message);
}
}
| 239 | 20.818182 | 67 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/tagging/WapitiTagger.java | package org.grobid.core.engines.tagging;
import com.google.common.base.Joiner;
import org.grobid.core.GrobidModel;
import org.grobid.core.GrobidModels;
import org.grobid.core.jni.WapitiModel;
import java.io.IOException;
public class WapitiTagger implements GenericTagger {
private final WapitiModel wapitiModel;
... | 735 | 21.30303 | 52 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/tagging/GenericTagger.java | package org.grobid.core.engines.tagging;
import java.io.Closeable;
public interface GenericTagger extends Closeable {
String label(Iterable<String> data);
String label(String data);
}
| 194 | 20.666667 | 50 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/tagging/CRFPPTagger.java | package org.grobid.core.engines.tagging;
import com.google.common.base.Splitter;
import org.chasen.crfpp.Model;
import org.chasen.crfpp.Tagger;
import org.grobid.core.GrobidModel;
import org.grobid.core.engines.ModelMap;
import org.grobid.core.exceptions.GrobidException;
import org.grobid.core.exceptions.GrobidExcepti... | 3,024 | 26.5 | 100 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/tagging/DeLFTTagger.java | package org.grobid.core.engines.tagging;
import com.google.common.base.Joiner;
import org.grobid.core.GrobidModel;
import org.grobid.core.GrobidModels;
import org.grobid.core.jni.DeLFTModel;
import java.io.IOException;
public class DeLFTTagger implements GenericTagger {
private final DeLFTModel delftModel;
... | 862 | 22.324324 | 64 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/tagging/TaggerFactory.java | package org.grobid.core.engines.tagging;
import org.grobid.core.GrobidModel;
import org.grobid.core.GrobidModels;
import org.grobid.core.utilities.GrobidProperties;
import org.grobid.core.main.LibraryLoader;
import java.util.HashMap;
import java.util.Map;
import java.io.File;
import org.slf4j.Logger;
import org.slf4... | 2,252 | 34.203125 | 124 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/tagging/GenericTaggerUtils.java | package org.grobid.core.engines.tagging;
import com.google.common.base.Joiner;
import com.google.common.base.Splitter;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.tuple.Pair;
import org.grobid.core.engines.label.TaggingLabels;
import org.grobid.core.utilities.Triple;
import org.wipo.an... | 3,882 | 42.144444 | 133 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/tagging/DummyTagger.java | package org.grobid.core.engines.tagging;
import com.google.common.base.Joiner;
import org.grobid.core.GrobidModel;
import org.grobid.core.GrobidModels;
import org.grobid.core.exceptions.GrobidException;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
/**
* This tagger just return one ... | 1,066 | 24.404762 | 121 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/tagging/GrobidCRFEngine.java | package org.grobid.core.engines.tagging;
import java.util.Arrays;
/**
* Sequence labeling engine in GROBID
*/
public enum GrobidCRFEngine {
WAPITI("wapiti"),
CRFPP("crf"),
DELFT("delft"),
DUMMY("dummy");
private final String ext;
GrobidCRFEngine(String ext) {
this.ext = ext;
}... | 950 | 22.195122 | 109 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/patent/ReferenceExtractor.java | package org.grobid.core.engines.patent;
import org.chasen.crfpp.Tagger;
import org.grobid.core.GrobidModels;
import org.grobid.core.data.BibDataSet;
import org.grobid.core.data.BiblioItem;
import org.grobid.core.data.PatentItem;
import org.grobid.core.document.Document;
import org.grobid.core.document.DocumentSource;
... | 70,983 | 40.031214 | 127 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/patent/PatentRefParser.java | package org.grobid.core.engines.patent;
import java.util.*;
import java.util.regex.*;
import java.lang.NumberFormatException;
import org.apache.commons.io.IOUtils;
import org.grobid.core.data.PatentItem;
import org.grobid.core.utilities.GrobidProperties;
import org.grobid.core.utilities.TextUtilities;
import org.grob... | 73,436 | 50.426471 | 257 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/label/TaggingLabelImpl.java | package org.grobid.core.engines.label;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.builder.EqualsBuilder;
import org.apache.commons.lang3.builder.HashCodeBuilder;
import org.grobid.core.GrobidModel;
import org.grobid.core.engines.tagging.GenericTaggerUtils;
/**
* Representing label t... | 1,648 | 26.483333 | 140 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/label/TaggingLabel.java | package org.grobid.core.engines.label;
import java.io.Serializable;
import org.grobid.core.GrobidModel;
import org.grobid.core.engines.counters.Countable;
public interface TaggingLabel extends Countable, Serializable {
GrobidModel getGrobidModel();
String getLabel();
}
| 283 | 19.285714 | 63 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/label/SegmentationLabels.java | package org.grobid.core.engines.label;
import org.grobid.core.GrobidModels;
public class SegmentationLabels extends TaggingLabels{
/**
* cover page <cover>,
* document header <header>,
* page footer <footnote>,
* page header <headnote>,
* note in margin <marginnote>,
* document body ... | 3,197 | 44.042254 | 126 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/label/TaggingLabels.java | package org.grobid.core.engines.label;
import org.grobid.core.GrobidModel;
import org.grobid.core.GrobidModels;
import org.grobid.core.engines.tagging.GenericTaggerUtils;
import org.grobid.core.utilities.Pair;
import java.util.concurrent.ConcurrentHashMap;
import java.util.concurrent.ConcurrentMap;
public class Tagg... | 23,746 | 58.3675 | 137 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/entities/NameToStructureResolver.java | package org.grobid.core.engines.entities;
import org.grobid.core.data.ChemicalEntity;
/**
* Chemical name-to-structure processing based on external Open Source libraries.
*
*/
public class NameToStructureResolver {
public static ChemicalEntity process(String name) {
ChemicalEntity result = new Chemic... | 458 | 18.956522 | 81 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/entities/ChemicalParser.java | package org.grobid.core.engines.entities;
import org.grobid.core.GrobidModels;
import org.grobid.core.data.ChemicalEntity;
import org.grobid.core.engines.AbstractParser;
import org.grobid.core.exceptions.GrobidException;
import org.grobid.core.features.FeaturesVectorChemicalEntity;
import org.grobid.core.utilities.Tex... | 6,340 | 34.623596 | 99 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/counters/CitationParserCounters.java | package org.grobid.core.engines.counters;
public class CitationParserCounters {
public static final Countable SEGMENTED_REFERENCES = new Countable() {
@Override
public String getName() {
return "SEGMENTED_REFERENCES";
}
};
public static final Countable NULL_SEGMENTED_REF... | 871 | 29.068966 | 84 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/counters/ReferenceMarkerMatcherCounters.java | package org.grobid.core.engines.counters;
public class ReferenceMarkerMatcherCounters {
public static final Countable MATCHED_REF_MARKERS = new Countable() {
@Override
public String getName() {
return "MATCHED_REF_MARKERS";
}
};
public static final Countable UNMATCHED_... | 2,192 | 26.074074 | 94 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/counters/FigureCounters.java | package org.grobid.core.engines.counters;
public class FigureCounters {
public static final Countable TOO_MANY_FIGURES_PER_PAGE = new Countable() {
@Override
public String getName() {
return "TOO_MANY_FIGURES_PER_PAGE";
}
};
public static final Countable STANDALONE_FIGUR... | 1,566 | 29.72549 | 120 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/counters/TableRejectionCounters.java | package org.grobid.core.engines.counters;
public class TableRejectionCounters {
public static final Countable CANNOT_PARSE_LABEL_TO_INT = new Countable() {
@Override
public String getName() {
return "CANNOT_PARSE_LABEL_TO_INT";
}
};
public static final Countable HEADER... | 2,296 | 26.674699 | 88 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/counters/Countable.java | package org.grobid.core.engines.counters;
public interface Countable {
String getName();
}
| 96 | 15.166667 | 41 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/citations/AdditionalRegexTextSegmenter.java | package org.grobid.core.engines.citations;
import org.apache.commons.io.FileUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.io.File;
import java.io.IOException;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collections;
import java.util.List;
import java.util.regex.... | 9,496 | 39.07173 | 131 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/citations/RegexReferenceSegmenter.java | package org.grobid.core.engines.citations;
import com.google.common.base.Function;
import com.google.common.base.Predicate;
import com.google.common.collect.Iterables;
import com.google.common.collect.Lists;
import org.grobid.core.utilities.TextUtilities;
import org.grobid.core.document.Document;
import org.grobid.cor... | 6,215 | 35.564706 | 148 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/citations/CalloutAnalyzer.java | package org.grobid.core.engines.citations;
import java.util.*;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import org.grobid.core.layout.LayoutToken;
import org.grobid.core.utilities.LayoutTokensUtil;
/**
* Identify the type of the marker callout with regex
*
*/
public class CalloutAnalyzer ... | 3,363 | 35.172043 | 133 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/citations/LabeledReferenceResult.java | package org.grobid.core.engines.citations;
import org.grobid.core.layout.BoundingBox;
import org.grobid.core.layout.LayoutToken;
import java.util.List;
public class LabeledReferenceResult {
private String label = null;
private final String referenceText;
private String features; // optionally the vector of ... | 1,439 | 25.666667 | 103 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/engines/citations/ReferenceSegmenter.java | package org.grobid.core.engines.citations;
import java.util.List;
import org.grobid.core.document.Document;
public interface ReferenceSegmenter {
List<LabeledReferenceResult> extract(String referenceBlock);
List<LabeledReferenceResult> extract(Document document);
}
| 273 | 26.4 | 64 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/lexicon/FastMatcher.java | package org.grobid.core.lexicon;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.StringUtils;
import org.grobid.core.layout.LayoutToken;
import org.grobid.core.exceptions.GrobidException;
import org.grobid.core.exceptions.GrobidResourceException;
import org.grobid.core.utilitie... | 26,579 | 37.299712 | 132 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/lexicon/Lexicon.java | package org.grobid.core.lexicon;
import java.io.BufferedReader;
import java.io.File;
import java.io.FileInputStream;
import java.io.FileNotFoundException;
import java.io.IOException;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;... | 43,784 | 37.509235 | 168 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/analyzers/ArabicChars.java | /**
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with
* this work for additional information regarding copyright ownership.
* The ASF licenses this file to You under the Apache License, Version 2.0
* (the "License"); you may... | 1,793 | 22 | 79 | java |
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