repo stringlengths 1 191 ⌀ | file stringlengths 23 351 | code stringlengths 0 5.32M | file_length int64 0 5.32M | avg_line_length float64 0 2.9k | max_line_length int64 0 288k | extension_type stringclasses 1
value |
|---|---|---|---|---|---|---|
grobid | grobid-master/grobid-core/src/test/java/org/grobid/core/engines/tagging/DeLFTTaggerIntegrationTest.java | package org.grobid.core.engines.tagging;
import jep.Jep;
import jep.JepConfig;
import org.grobid.core.data.Date;
import org.grobid.core.engines.DateParser;
import org.grobid.core.engines.EngineParsers;
import org.grobid.core.jni.JEPThreadPool;
import org.grobid.core.main.LibraryLoader;
import org.junit.Test;
import j... | 1,690 | 32.156863 | 157 | java |
grobid | grobid-master/grobid-core/src/test/java/org/grobid/core/engines/tagging/DummyTaggerTest.java | package org.grobid.core.engines.tagging;
import org.grobid.core.GrobidModels;
import org.grobid.core.exceptions.GrobidException;
import org.grobid.core.utilities.GrobidProperties;
import org.junit.Before;
import org.junit.Test;
import org.junit.BeforeClass;
import java.util.Arrays;
import static org.hamcrest.CoreMat... | 1,166 | 25.522727 | 71 | java |
grobid | grobid-master/grobid-core/src/test/java/org/grobid/core/engines/tagging/GenericTaggerUtilsTest.java | package org.grobid.core.engines.tagging;
import org.junit.Test;
import static org.hamcrest.CoreMatchers.is;
import static org.junit.Assert.*;
public class GenericTaggerUtilsTest {
@Test
public void testGetPlainLabel_normalValue() throws Exception {
assertThat(GenericTaggerUtils.getPlainLabel("<statu... | 1,635 | 29.296296 | 83 | java |
grobid | grobid-master/grobid-core/src/test/java/org/grobid/core/engines/tagging/TaggerFactoryTest.java | package org.grobid.core.engines.tagging;
import org.grobid.core.GrobidModels;
import org.grobid.core.main.LibraryLoader;
import org.junit.After;
import org.junit.Before;
import org.junit.Test;
import org.powermock.reflect.Whitebox;
import java.util.HashMap;
import static org.hamcrest.CoreMatchers.is;
import static o... | 1,411 | 26.153846 | 99 | java |
grobid | grobid-master/grobid-core/src/test/java/org/grobid/core/engines/patent/ReferenceExtractorTest.java | package org.grobid.core.engines.patent;
import static org.grobid.core.utilities.TextUtilities.delimiters;
import static org.junit.Assert.assertEquals;
import java.io.File;
import java.util.ArrayList;
import java.util.List;
import java.util.StringTokenizer;
import org.grobid.core.data.BibDataSet;
import org.grobid.co... | 8,763 | 38.656109 | 229 | java |
grobid | grobid-master/grobid-core/src/test/java/org/grobid/core/engines/citations/CalloutAnalyzerTest.java | package org.grobid.core.engines.citations;
import org.junit.Before;
import org.junit.BeforeClass;
import org.junit.AfterClass;
import org.junit.Test;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import static org.hamcrest.Matchers.hasSize;
import static org.hamcrest.Matchers.nullValue;
import static org.j... | 2,980 | 40.985915 | 108 | java |
grobid | grobid-master/grobid-core/src/test/java/org/grobid/core/lexicon/FastMatcherTest.java | package org.grobid.core.lexicon;
import org.grobid.core.utilities.GrobidProperties;
import org.grobid.core.utilities.OffsetPosition;
import org.grobid.core.layout.LayoutToken;
import org.grobid.core.analyzers.GrobidAnalyzer;
import org.junit.*;
import java.io.File;
import java.util.Arrays;
import java.util.List;
imp... | 6,115 | 34.149425 | 110 | java |
grobid | grobid-master/grobid-core/src/test/java/org/grobid/core/lexicon/LexiconIntegrationTest.java | package org.grobid.core.lexicon;
import org.grobid.core.analyzers.GrobidAnalyzer;
import org.grobid.core.utilities.OffsetPosition;
import org.grobid.core.utilities.LayoutTokensUtil;
import org.grobid.core.layout.LayoutToken;
import org.junit.AfterClass;
import org.junit.Before;
import org.junit.Test;
import java.util... | 17,516 | 42.902256 | 345 | java |
grobid | grobid-master/grobid-core/src/test/java/org/grobid/core/analyzers/GrobidAnalyzerTest.java | package org.grobid.core.analyzers;
import org.grobid.core.layout.LayoutToken;
import org.grobid.core.lang.Language;
import org.grobid.core.utilities.UnicodeUtil;
import org.junit.Before;
import org.junit.Test;
import java.util.List;
import static org.hamcrest.Matchers.hasSize;
import static org.hamcrest.Matchers.is;... | 5,555 | 39.852941 | 132 | java |
grobid | grobid-master/grobid-core/src/test/java/org/grobid/core/analyzers/GrobidDefaultAnalyzerTest.java | package org.grobid.core.analyzers;
import org.grobid.core.layout.LayoutToken;
import org.junit.Before;
import org.junit.Test;
import java.util.List;
import static org.hamcrest.Matchers.hasSize;
import static org.hamcrest.Matchers.is;
import static org.junit.Assert.*;
public class GrobidDefaultAnalyzerTest {
Gro... | 1,823 | 37.808511 | 132 | java |
grobid | grobid-master/grobid-core/src/test/java/org/grobid/core/data/PersonDeduplicationTest.java | package org.grobid.core.data;
import org.junit.Test;
import java.util.Arrays;
import java.util.List;
import java.util.ArrayList;
import static org.hamcrest.Matchers.hasSize;
import static org.junit.Assert.assertThat;
import static org.junit.Assert.assertEquals;
import static org.hamcrest.CoreMatchers.*;
import static... | 7,255 | 30.68559 | 72 | java |
grobid | grobid-master/grobid-core/src/test/java/org/grobid/core/data/AuthorEmailAssignerTest.java | package org.grobid.core.data;
import org.grobid.core.data.util.AuthorEmailAssigner;
import org.grobid.core.data.util.ClassicAuthorEmailAssigner;
import org.junit.Test;
import java.util.Arrays;
import java.util.List;
public class AuthorEmailAssignerTest {
@Test
public void testEmailAssignment() {
Aut... | 1,106 | 25.357143 | 122 | java |
grobid | grobid-master/grobid-core/src/test/java/org/grobid/core/data/EmailSanitizerTest.java | package org.grobid.core.data;
import org.grobid.core.data.util.EmailSanitizer;
import org.junit.Test;
import java.util.Arrays;
import java.util.List;
import static org.junit.Assert.assertEquals;
public class EmailSanitizerTest {
EmailSanitizer sanitizer = new EmailSanitizer();
@Test
public void testEma... | 825 | 23.294118 | 74 | java |
grobid | grobid-master/grobid-core/src/test/java/org/grobid/core/data/DateTest.java | package org.grobid.core.data;
import org.junit.Test;
import static org.hamcrest.CoreMatchers.is;
import static org.junit.Assert.assertThat;
public class DateTest {
Date target;
Date other;
@Test
public void testDateMerging_yearVsYearMonth_shouldReturnYearMonth() {
// "2010" "2010-10" -> "201... | 4,824 | 23.871134 | 84 | java |
grobid | grobid-master/grobid-core/src/test/java/org/grobid/core/data/BiblioItemTest.java | package org.grobid.core.data;
import org.grobid.core.main.LibraryLoader;
import org.hamcrest.Matchers;
import org.junit.Before;
import org.junit.Test;
import java.util.Arrays;
import static org.hamcrest.CoreMatchers.is;
import static org.hamcrest.Matchers.hasSize;
import static org.junit.Assert.assertThat;
import ... | 18,680 | 39.699346 | 185 | java |
grobid | grobid-master/grobid-core/src/test/java/org/grobid/core/data/PersonNormalisationTest.java | package org.grobid.core.data;
import org.junit.Test;
import java.util.Arrays;
import java.util.List;
import static org.hamcrest.Matchers.hasSize;
import static org.junit.Assert.assertThat;
import static org.junit.Assert.assertEquals;
import static org.hamcrest.CoreMatchers.*;
public class PersonNormalisationTest {
... | 4,310 | 30.467153 | 60 | java |
grobid | grobid-master/grobid-core/src/test/java/org/grobid/core/transformation/xslt/JatsTransformerTest.java | package org.grobid.core.transformation.xslt;
import org.apache.commons.io.IOUtils;
import org.junit.Before;
import org.junit.Ignore;
import org.junit.Test;
public class JatsTransformerTest {
JATSTransformer target;
@Before
public void setUp() throws Exception {
target = new JATSTransformer();
... | 963 | 29.125 | 123 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/GrobidModel.java | package org.grobid.core;
import java.io.Serializable;
public interface GrobidModel extends Serializable {
String getFolderName();
String getModelPath();
String getModelName();
String getTemplateName();
String toString();
}
| 250 | 13.764706 | 51 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/GrobidModels.java | package org.grobid.core;
import org.apache.commons.lang3.StringUtils;
import org.grobid.core.utilities.GrobidProperties;
import java.io.File;
import java.util.concurrent.ConcurrentHashMap;
import java.util.concurrent.ConcurrentMap;
import static org.grobid.core.engines.EngineParsers.LOGGER;
/**
* This enum class a... | 4,811 | 29.075 | 113 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/factory/GrobidPoolingFactory.java | package org.grobid.core.factory;
import java.util.NoSuchElementException;
import org.apache.commons.pool.PoolableObjectFactory;
import org.apache.commons.pool.impl.GenericObjectPool;
import org.grobid.core.engines.Engine;
import org.grobid.core.exceptions.GrobidException;
import org.grobid.core.utilities.GrobidProper... | 3,923 | 27.642336 | 100 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/factory/AbstractEngineFactory.java | package org.grobid.core.factory;
import org.grobid.core.engines.Engine;
import org.grobid.core.engines.ModelMap;
import org.grobid.core.engines.tagging.GrobidCRFEngine;
import org.grobid.core.lexicon.Lexicon;
import org.grobid.core.main.LibraryLoader;
import org.grobid.core.utilities.GrobidProperties;
import java.uti... | 1,868 | 20 | 104 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/factory/GrobidFactory.java | package org.grobid.core.factory;
import org.grobid.core.engines.Engine;
/**
* Factory to get engine instances.
*/
public class GrobidFactory extends AbstractEngineFactory {
/**
* The instance of GrobidFactory.
*/
private static GrobidFactory factory = null;
/**
* Constructor.
*/
protected GrobidFactor... | 1,459 | 16.176471 | 76 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/features/FeaturesVectorName.java | package org.grobid.core.features;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.grobid.core.utilities.OffsetPosition;
import org.grobid.core.utilities.TextUtilities;
import org.grobid.core.utilities.UnicodeUtil;
import org.grobid.core.utilities.TextUti... | 12,022 | 31.233244 | 103 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/features/FeaturesVectorDate.java | package org.grobid.core.features;
import org.grobid.core.utilities.TextUtilities;
import java.util.List;
import java.util.regex.Matcher;
/**
* Class for features used for parsing date chunk.
*
*/
public class FeaturesVectorDate {
public String string = null; // lexical feature
public String label = null; ... | 9,248 | 30.566553 | 90 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/features/FeaturesVectorChemicalEntity.java | package org.grobid.core.features;
import org.grobid.core.utilities.TextUtilities;
import java.util.StringTokenizer;
import java.util.regex.Matcher;
/**
* Class for features used for chemical entity identification in raw texts such as scientific articles
* and patent descriptions.
*
*/
public class FeaturesVector... | 6,899 | 32.333333 | 105 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/features/FeaturesVectorReferenceSegmenter.java | package org.grobid.core.features;
import java.util.List;
import java.util.regex.Matcher;
import org.grobid.core.layout.LayoutToken;
import org.grobid.core.utilities.TextUtilities;
/**
* Class for features used for header parsing.
*
*/
public class FeaturesVectorReferenceSegmenter {
// default bins for relative... | 5,181 | 30.216867 | 112 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/features/FeaturesVectorMonograph.java | package org.grobid.core.features;
import org.grobid.core.layout.LayoutToken;
import org.grobid.core.utilities.TextUtilities;
/**
* Class for features used for high level segmentation of a monograph.
*
*/
public class FeaturesVectorMonograph {
public LayoutToken token = null; // not a feature, reference value
... | 7,323 | 29.139918 | 143 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/features/FeaturesVectorAffiliationAddress.java | package org.grobid.core.features;
import java.util.List;
import java.util.StringTokenizer;
import java.util.regex.Matcher;
import org.grobid.core.utilities.OffsetPosition;
import org.grobid.core.exceptions.GrobidException;
import org.grobid.core.utilities.TextUtilities;
import org.grobid.core.layout.LayoutToken;
/**... | 10,926 | 34.70915 | 116 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/features/FeaturesVectorHeader.java | package org.grobid.core.features;
import java.io.*;
import java.util.List;
import java.util.ArrayList;
import java.util.regex.Matcher;
import org.grobid.core.layout.LayoutToken;
import org.grobid.core.utilities.TextUtilities;
/**
* Class for features used for header parsing.
*
*/
public class FeaturesVectorHeader... | 6,001 | 27.580952 | 122 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/features/FeaturesVectorCitation.java | package org.grobid.core.features;
import org.grobid.core.exceptions.GrobidException;
import org.grobid.core.utilities.OffsetPosition;
import org.grobid.core.utilities.TextUtilities;
import org.grobid.core.utilities.UnicodeUtil;
import org.grobid.core.engines.label.TaggingLabel;
import org.grobid.core.layout.LayoutToke... | 22,072 | 36.097479 | 122 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/features/FeaturesVectorSegmentation.java | package org.grobid.core.features;
import org.grobid.core.layout.LayoutToken;
import org.grobid.core.utilities.TextUtilities;
/**
* Class for features used for high level segmentation of document.
*
*/
public class FeaturesVectorSegmentation {
public LayoutToken token = null; // not a feature, reference value
... | 7,287 | 28.99177 | 143 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/features/FeatureFactory.java | package org.grobid.core.features;
import org.grobid.core.lexicon.Lexicon;
import org.grobid.core.utilities.OffsetPosition;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import java.util.regex.Pattern;
/**
* Class providing a toolkit for managing and creating features or string sequence... | 9,929 | 26.057221 | 264 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/features/FeaturesVectorReference.java | package org.grobid.core.features;
import org.grobid.core.utilities.TextUtilities;
import java.util.StringTokenizer;
import java.util.regex.Matcher;
/**
* Class for features used for reference identification in raw texts such as patent descriptions.
* It covers references to scholar works and to patent publications... | 9,123 | 30.570934 | 99 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/features/FeaturesVectorFigure.java | package org.grobid.core.features;
import org.grobid.core.layout.LayoutToken;
import org.grobid.core.utilities.TextUtilities;
/**
* Class for features used for figure/table parsing.
*
*/
public class FeaturesVectorFigure {
public LayoutToken token = null; // not a feature, reference value
public String stri... | 5,224 | 27.708791 | 90 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/features/FeaturesVectorFulltext.java | package org.grobid.core.features;
import org.grobid.core.layout.LayoutToken;
import org.grobid.core.utilities.TextUtilities;
/**
* Class for features used for fulltext parsing.
*
*/
public class FeaturesVectorFulltext {
public LayoutToken token = null; // not a feature, reference value
public String string... | 5,369 | 30.22093 | 111 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/lang/Language.java | package org.grobid.core.lang;
import org.grobid.core.exceptions.GrobidException;
/**
* Language recognition result
*/
public final class Language {
//common language constants (TBD use an external ISO_639-1 reference lib.)
public static final String EN = "en";
public static final String DE = "de";
p... | 3,004 | 27.894231 | 112 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/lang/LanguageDetector.java | package org.grobid.core.lang;
/**
* Interface for language recognition method/library
*/
public interface LanguageDetector {
/**
* Detects a language id that must consist of two letter together with a confidence coefficient.
* If coefficient cannot be provided for some reason, it should be 1.0
* @... | 481 | 31.133333 | 100 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/lang/SentenceDetectorFactory.java | package org.grobid.core.lang;
/**
* Factory for sentence detector instance
*/
public interface SentenceDetectorFactory {
SentenceDetector getInstance();
}
| 162 | 17.111111 | 42 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/lang/LanguageDetectorFactory.java | package org.grobid.core.lang;
/**
* Factory for language detector instance
*/
public interface LanguageDetectorFactory {
LanguageDetector getInstance();
}
| 162 | 17.111111 | 42 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/lang/SentenceDetector.java | package org.grobid.core.lang;
import org.grobid.core.utilities.OffsetPosition;
import java.util.List;
/**
* Interface for sentence recognition method/library
*/
public interface SentenceDetector {
/**
* Detects sentence boundaries
* @param text text to detect sentence boundaries
* @return a list... | 919 | 30.724138 | 77 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/lang/impl/OpenNLPSentenceDetectorFactory.java | package org.grobid.core.lang.impl;
import org.grobid.core.lang.SentenceDetector;
import org.grobid.core.lang.SentenceDetectorFactory;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.io.File;
/**
* Implementation of a sentence segmenter factory with OpenNLP language identifier
*/
public class ... | 906 | 29.233333 | 103 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/lang/impl/PragmaticSentenceDetectorFactory.java | package org.grobid.core.lang.impl;
import org.grobid.core.lang.SentenceDetector;
import org.grobid.core.lang.SentenceDetectorFactory;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.io.File;
/**
* Implementation of a sentence segmenter factory with OpenNLP language identifier
*/
public class ... | 912 | 29.433333 | 105 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/lang/impl/CybozuLanguageDetector.java | package org.grobid.core.lang.impl;
import com.cybozu.labs.langdetect.Detector;
import com.cybozu.labs.langdetect.DetectorFactory;
import com.cybozu.labs.langdetect.LangDetectException;
import org.grobid.core.lang.Language;
import org.grobid.core.lang.LanguageDetector;
import org.slf4j.Logger;
import org.slf4j.LoggerFa... | 1,292 | 33.945946 | 112 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/lang/impl/PragmaticSentenceDetector.java | package org.grobid.core.lang.impl;
import org.jruby.embed.PathType;
import org.jruby.embed.ScriptingContainer;
import org.jruby.embed.LocalContextScope;
import org.jruby.embed.LocalVariableBehavior;
import org.grobid.core.lang.SentenceDetector;
import org.grobid.core.lang.Language;
import org.grobid.core.utilities.Of... | 9,514 | 59.99359 | 1,511 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/lang/impl/CybozuLanguageDetectorFactory.java | package org.grobid.core.lang.impl;
import com.cybozu.labs.langdetect.DetectorFactory;
import com.cybozu.labs.langdetect.LangDetectException;
import org.grobid.core.lang.LanguageDetector;
import org.grobid.core.lang.LanguageDetectorFactory;
import org.grobid.core.utilities.GrobidProperties;
import org.slf4j.Logger;
imp... | 1,717 | 34.791667 | 141 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/lang/impl/OpenNLPSentenceDetector.java | package org.grobid.core.lang.impl;
import opennlp.tools.sentdetect.SentenceDetectorME;
import opennlp.tools.sentdetect.SentenceModel;
import opennlp.tools.util.Span;
import org.grobid.core.lang.SentenceDetector;
import org.grobid.core.lang.Language;
import org.grobid.core.utilities.OffsetPosition;
import org.grobid.... | 2,045 | 33.1 | 115 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/sax/CountryCodeSaxParser.java | package org.grobid.core.sax;
import org.xml.sax.Attributes;
import org.xml.sax.SAXException;
import org.xml.sax.helpers.DefaultHandler;
import java.util.Map;
import java.util.Set;
/**
* SAX parser for the XML description of country codes in ISO 3166.
*
*/
public class CountryCodeSaxParser extends DefaultHandler {... | 3,031 | 29.019802 | 88 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/sax/CrossrefSaxParser.java | package org.grobid.core.sax;
import org.grobid.core.data.BiblioItem;
import java.io.*;
import org.xml.sax.*;
import org.xml.sax.helpers.*;
/**
* SAX parser for XML crossref DOI metadata descriptions.
* See http://www.crossref.org/openurl_info.html
*
* -> This is not used anymore, we use the JSON REST API from
... | 3,002 | 26.550459 | 72 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/sax/PatentAnnotationSaxParser.java | package org.grobid.core.sax;
import java.io.*;
import org.xml.sax.*;
import org.xml.sax.helpers.*;
import java.util.*;
import org.grobid.core.data.PatentItem;
import org.grobid.core.data.BibDataSet;
import org.grobid.core.utilities.TextUtilities;
import org.grobid.core.exceptions.GrobidException;
/**
* This SAX ... | 6,408 | 25.704167 | 107 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/sax/TextSaxParser.java | package org.grobid.core.sax;
import org.xml.sax.*;
import org.xml.sax.helpers.*;
/**
* Stupid SAX parser which accumulate the textual content.
* <p/>
* As an option, it is possible to accumulate only the content under a given
* element name, for instance "description" for getting the description of a
* patent XM... | 2,562 | 22.731481 | 77 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/sax/CrossrefUnixrefSaxParser.java | package org.grobid.core.sax;
import org.grobid.core.data.BiblioItem;
import org.apache.commons.lang3.StringUtils;
import org.xml.sax.*;
import org.xml.sax.helpers.*;
import java.util.*;
/**
* SAX parser for XML crossref DOI metadata descriptions.
* See http://www.crossref.org/openurl_info.html
*
*/
public class... | 13,357 | 36.522472 | 122 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/sax/MarecSaxParser.java | package org.grobid.core.sax;
import org.grobid.core.exceptions.GrobidException;
import org.grobid.core.utilities.TextUtilities;
import org.grobid.core.lexicon.Lexicon;
import org.grobid.core.utilities.OffsetPosition;
import org.grobid.core.analyzers.GrobidAnalyzer;
import org.xml.sax.*;
import org.xml.sax.helpers.*;
... | 21,154 | 39.998062 | 111 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/sax/PDFALTOAnnotationSaxHandler.java | package org.grobid.core.sax;
import org.grobid.core.layout.Block;
import org.grobid.core.layout.Page;
import org.grobid.core.layout.PDFAnnotation;
import org.grobid.core.document.Document;
import org.grobid.core.layout.LayoutToken;
import org.grobid.core.layout.GraphicObject;
import org.grobid.core.layout.BoundingBox;... | 5,707 | 29.524064 | 101 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/sax/PDFALTOSaxHandler.java | package org.grobid.core.sax;
import org.apache.commons.lang3.StringUtils;
import org.grobid.core.analyzers.Analyzer;
import org.grobid.core.analyzers.GrobidAnalyzer;
import org.grobid.core.document.Document;
import org.grobid.core.layout.*;
import org.grobid.core.utilities.TextUtilities;
import org.grobid.core.utiliti... | 26,192 | 34.01738 | 130 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/sax/PDFMetadataSaxHandler.java | package org.grobid.core.sax;
import org.grobid.core.document.Document;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.xml.sax.Attributes;
import org.xml.sax.SAXException;
import org.xml.sax.helpers.DefaultHandler;
import org.grobid.core.data.Metadata;
/**
* SAX parser for the metadata of PDF fil... | 2,813 | 29.258065 | 90 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/sax/PDFALTOOutlineSaxHandler.java | package org.grobid.core.sax;
import org.grobid.core.document.DocumentNode;
import org.grobid.core.document.Document;
import org.grobid.core.layout.BoundingBox;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.xml.sax.*;
import org.xml.sax.helpers.*;
import java.util.*;
/**
* SAX parser for ALTO ... | 6,501 | 27.393013 | 97 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/tokenization/TaggingTokenClusteror.java | package org.grobid.core.tokenization;
import com.google.common.base.Predicate;
import com.google.common.collect.Iterators;
import com.google.common.collect.PeekingIterator;
import org.grobid.core.GrobidModel;
import org.grobid.core.engines.label.TaggingLabel;
import org.grobid.core.layout.LayoutToken;
import java.uti... | 3,072 | 34.321839 | 122 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/tokenization/LabeledTokensContainer.java | package org.grobid.core.tokenization;
import org.grobid.core.engines.label.TaggingLabel;
import org.grobid.core.engines.tagging.GenericTaggerUtils;
import org.grobid.core.layout.LayoutToken;
import java.util.List;
/**
* Representing labeled tokens and stuff
*/
public class LabeledTokensContainer {
private Lis... | 2,069 | 23.939759 | 127 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/tokenization/TaggingTokenSynchronizer.java | package org.grobid.core.tokenization;
import com.google.common.collect.Iterators;
import com.google.common.collect.PeekingIterator;
import org.grobid.core.GrobidModel;
import org.grobid.core.engines.label.TaggingLabels;
import org.grobid.core.engines.tagging.GenericTaggerUtils;
import org.grobid.core.layout.LayoutToke... | 6,200 | 39.006452 | 149 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/tokenization/TaggingTokenCluster.java | package org.grobid.core.tokenization;
import com.google.common.base.Function;
import com.google.common.base.Joiner;
import com.google.common.collect.Iterables;
import com.google.common.collect.Lists;
import org.grobid.core.engines.label.TaggingLabel;
import org.grobid.core.layout.LayoutToken;
import java.util.ArrayLi... | 2,751 | 32.156627 | 156 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/process/ProcessRunner.java | package org.grobid.core.process;
import org.apache.commons.io.IOUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.io.IOException;
import java.lang.reflect.Field;
import java.util.List;
import java.util.ArrayList;
public class ProcessRunner extends Thread {
private static final Logger LO... | 3,887 | 28.907692 | 116 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/process/StreamGobbler.java | package org.grobid.core.process;
import java.io.IOException;
import java.io.InputStream;
/**
* Copyright (c) 2006-2011 Christian Plattner. All rights reserved.
*/
public class StreamGobbler extends InputStream {
class GobblerThread extends Thread {
@Override
public void run() {
byte[... | 5,543 | 27.875 | 104 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/process/ProcessPdfToXml.java | package org.grobid.core.process;
import org.apache.commons.io.IOUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.io.*;
import java.util.List;
import static java.nio.charset.StandardCharsets.UTF_8;
public class ProcessPdfToXml {
private static final Logger LOGGER = LoggerFactory.getLo... | 2,249 | 34.15625 | 116 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/process/StreamProcess.java | package org.grobid.core.process;
import java.io.IOException;
import java.io.InputStream;
public class StreamProcess extends InputStream {
protected void run() {
byte[] buff = new byte[8192];
while (true) {
try {
int avail = is.read(buff);
// synchronized (synchronizer) {
if (avail <= 0) {
... | 3,783 | 19.021164 | 65 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/jni/DeLFTClassifierModel.java | package org.grobid.core.jni;
import org.grobid.core.GrobidModel;
import org.grobid.core.GrobidModels;
import org.grobid.core.exceptions.GrobidException;
import org.grobid.core.utilities.GrobidProperties;
import org.grobid.core.utilities.IOUtilities;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java... | 17,054 | 43.069767 | 151 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/jni/DeLFTModel.java | package org.grobid.core.jni;
import org.grobid.core.GrobidModel;
import org.grobid.core.engines.label.TaggingLabels;
import org.grobid.core.exceptions.GrobidException;
import org.grobid.core.utilities.GrobidProperties;
import org.grobid.core.utilities.IOUtilities;
import org.slf4j.Logger;
import org.slf4j.LoggerFactor... | 21,375 | 43.813417 | 136 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/jni/WapitiWrapper.java | package org.grobid.core.jni;
import com.google.common.base.Throwables;
import fr.limsi.wapiti.SWIGTYPE_p_mdl_t;
import fr.limsi.wapiti.Wapiti;
import org.grobid.core.exceptions.GrobidException;
import org.grobid.core.exceptions.GrobidExceptionStatus;
import java.io.File;
public class WapitiWrapper {
public stati... | 1,185 | 33.882353 | 177 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/jni/PythonEnvironmentConfig.java | package org.grobid.core.jni;
import java.io.IOException;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.List;
import java.util.stream.Collectors;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.io.FilenameUtils;
import org.apache.c... | 4,461 | 29.772414 | 110 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/jni/JEPThreadPool.java | package org.grobid.core.jni;
import java.util.concurrent.*;
import java.util.*;
import java.io.*;
import java.nio.file.Path;
import org.grobid.core.utilities.GrobidProperties;
import org.grobid.core.exceptions.GrobidResourceException;
import jep.Jep;
import jep.JepConfig;
import jep.JepException;
import jep.SubInter... | 6,598 | 35.865922 | 141 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/jni/WapitiModel.java | package org.grobid.core.jni;
import fr.limsi.wapiti.SWIGTYPE_p_mdl_t;
import fr.limsi.wapiti.Wapiti;
import org.grobid.core.GrobidModel;
import org.grobid.core.GrobidModels;
import org.grobid.core.exceptions.GrobidException;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.io.File;
public class W... | 2,355 | 31.722222 | 157 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/jni/JEPThreadPoolClassifier.java | package org.grobid.core.jni;
import java.util.concurrent.*;
import java.util.*;
import java.io.*;
import java.nio.file.Path;
import org.grobid.core.utilities.GrobidProperties;
import org.grobid.core.exceptions.GrobidResourceException;
import jep.Jep;
import jep.JepConfig;
import jep.JepException;
import jep.SubInter... | 6,761 | 36.359116 | 141 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/DataSetContextExtractor.java | package org.grobid.core.utilities;
import com.google.common.collect.ListMultimap;
import com.google.common.collect.Multimap;
import com.google.common.collect.MultimapBuilder;
import net.sf.saxon.om.Item;
import net.sf.saxon.om.SequenceIterator;
import net.sf.saxon.trans.XPathException;
import org.apache.commons.io.IOU... | 7,521 | 36.237624 | 121 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/GrobidProperties.java | package org.grobid.core.utilities;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils;
import org.grobid.core.GrobidModel;
import org.grobid.core.engines.tagging.GrobidCRFEngine;
import org.grobid.core.exceptions.GrobidPropertyException;
import org.grobid.core.exceptions.GrobidResourceEx... | 32,807 | 35.092409 | 144 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/ElementCounterItem.java | package org.grobid.core.utilities;
public class ElementCounterItem<T> {
private T item;
private Integer cnt;
//for Jackson
public ElementCounterItem() {
}
public ElementCounterItem(T item, Integer cnt) {
this.item = item;
this.cnt = cnt;
}
public T getItem() {
... | 410 | 15.44 | 52 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/ConsolidationCounters.java | package org.grobid.core.utilities;
import org.grobid.core.engines.counters.*;
/**
* Counters for keeping track of consolidation activity and results
*
*/
public class ConsolidationCounters {
public static final Countable CONSOLIDATION = new Countable() {
@Override
public String getName() {
... | 1,126 | 27.175 | 83 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/Pair.java | package org.grobid.core.utilities;
public class Pair<A, B> {
public final A a;
public final B b;
public Pair(A a, B b) {
this.a = a;
this.b = b;
}
@Override
public String toString() {
StringBuilder sb = new StringBuilder();
sb
.append("('")
... | 1,094 | 20.057692 | 89 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/TextUtilities.java | package org.grobid.core.utilities;
import org.apache.commons.lang3.StringUtils;
import org.grobid.core.analyzers.GrobidAnalyzer;
import org.grobid.core.exceptions.GrobidException;
import org.grobid.core.layout.LayoutToken;
import org.grobid.core.lexicon.Lexicon;
import java.io.BufferedReader;
import java.io.IOExcepti... | 46,407 | 32.874453 | 156 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/LevenshteinDistanceAligment.java | package org.grobid.core.utilities;
import java.util.*;
/**
* Distance and aligment of strings based on Levenshtein edit distances using the
* standard <b>Dynamic Programming</b> algorithm. Standard Levenshtein distance is
* implemented, i.e. without transpose!
* <p/>
* Based on algorithm at
* - http://www.csse.... | 10,136 | 30.877358 | 113 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/OffsetPosition.java | package org.grobid.core.utilities;
import org.apache.commons.lang3.builder.EqualsBuilder;
import org.apache.commons.lang3.builder.HashCodeBuilder;
public class OffsetPosition implements Comparable<OffsetPosition> {
public int start = -1;
public int end = -1;
public OffsetPosition() {
}
public Of... | 1,482 | 22.919355 | 67 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/GrobidConfig.java | package org.grobid.core.utilities;
import java.util.List;
/**
* This class is a bean for the YAML configuation of the GROBID instance.
*
*/
public class GrobidConfig {
public GrobidParameters grobid;
public static class GrobidParameters {
public String grobidHome = "grobid-home";
public... | 3,136 | 26.278261 | 87 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/LayoutTokensUtil.java | package org.grobid.core.utilities;
import org.apache.commons.lang3.StringUtils;
import com.google.common.base.Function;
import com.google.common.base.Joiner;
import com.google.common.collect.Iterables;
import com.google.common.collect.Iterators;
import com.google.common.collect.PeekingIterator;
import org.grobid.cor... | 11,841 | 34.035503 | 138 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/BoundingBoxCalculator.java | package org.grobid.core.utilities;
import com.google.common.base.Predicate;
import com.google.common.collect.Iterables;
import com.google.common.collect.Lists;
import org.grobid.core.layout.BoundingBox;
import org.grobid.core.layout.LayoutToken;
import java.util.List;
/**
* Utilities to calculate bounding boxes fro... | 3,022 | 33.747126 | 140 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/LanguageUtilities.java | package org.grobid.core.utilities;
import org.grobid.core.exceptions.GrobidException;
import org.grobid.core.lang.Language;
import org.grobid.core.lang.LanguageDetectorFactory;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* Class for using language guessers (singleton).
*/
public class LanguageUtili... | 3,138 | 31.360825 | 93 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/SHA1.java | package org.grobid.core.utilities;
import java.io.UnsupportedEncodingException;
import java.security.MessageDigest;
import java.security.NoSuchAlgorithmException;
import java.util.Formatter;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* Hash a string using sha1.
*
*/
public class SHA1 {
/**
... | 1,414 | 22.196721 | 88 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/Consolidation.java | package org.grobid.core.utilities;
import com.rockymadden.stringmetric.similarity.RatcliffObershelpMetric;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.exception.ExceptionUtils;
import org.grobid.core.data.BibDataSet;
import org.gr... | 24,795 | 42.731922 | 155 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/Triple.java | package org.grobid.core.utilities;
import com.google.common.base.Function;
public class Triple<A, B, C> {
private final A a;
private final B b;
private final C c;
public Triple(A a, B b, C c) {
this.a = a;
this.b = b;
this.c = c;
}
public Function getAFunction = new ... | 1,904 | 20.404494 | 71 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/PathUtil.java | package org.grobid.core.utilities;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.io.File;
import java.io.FilenameFilter;
import java.io.IOException;
import java.nio.file.FileVisitResult;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.SimpleFileVisitor;
import java.n... | 2,174 | 32.461538 | 107 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/IOUtilities.java | package org.grobid.core.utilities;
import org.grobid.core.exceptions.GrobidResourceException;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.io.*;
import java.util.List;
import java.nio.file.Files;
import java.nio.file.Path;
import java.util.Date;
import static org.apache.commons.lang3.StringUt... | 8,725 | 34.327935 | 120 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/UnicodeUtil.java | package org.grobid.core.utilities;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
/**
* Class for holding static methods for processing related to unicode.
*
*/
public class UnicodeUtil {
private static final Pattern DASH_PATTERN = Pattern.compile("[\\p{Pd}\\u2212]");
private static final... | 10,798 | 49.227907 | 157 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/XQueryProcessor.java | package org.grobid.core.utilities;
import net.sf.saxon.Configuration;
import net.sf.saxon.om.DocumentInfo;
import net.sf.saxon.om.SequenceIterator;
import net.sf.saxon.query.DynamicQueryContext;
import net.sf.saxon.query.StaticQueryContext;
import net.sf.saxon.query.XQueryExpression;
import net.sf.saxon.trans.XPathExc... | 2,063 | 31.761905 | 96 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/SentenceUtilities.java | package org.grobid.core.utilities;
import org.grobid.core.exceptions.GrobidException;
import org.grobid.core.lang.SentenceDetectorFactory;
import org.grobid.core.lang.Language;
import org.grobid.core.layout.LayoutToken;
import java.util.*;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* Class for us... | 14,524 | 43.555215 | 150 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/KeyGen.java | package org.grobid.core.utilities;
/**
* Generate a random key.
*
*/
public class KeyGen {
/**
* Minimum length for a decent key
*/
public static final int MIN_LENGTH = 10;
/**
* The random number generator.
*/
protected static java.util.Random r = new java.util.Random();
/... | 1,320 | 29.72093 | 80 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/Utilities.java | package org.grobid.core.utilities;
import org.apache.commons.collections4.CollectionUtils;
import java.io.BufferedWriter;
import java.io.ByteArrayOutputStream;
import java.io.File;
import java.io.FileInputStream;
import java.io.FileNotFoundException;
import java.io.FileOutputStream;
import java.io.FileWriter;
import ... | 17,189 | 29.31746 | 116 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/EnvironmentVariableValues.java | package org.grobid.core.utilities;
import java.util.HashMap;
import java.util.Map;
public class EnvironmentVariableValues {
private final Map<String, String> configParameters = new HashMap<>();
public EnvironmentVariableValues(String matcher) {
this(System.getenv(), matcher);
}
public Enviro... | 770 | 28.653846 | 99 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/ElementCounter.java | package org.grobid.core.utilities;
import com.google.common.base.Function;
import com.google.common.collect.Iterables;
import com.google.common.collect.Lists;
import java.io.Serializable;
import java.util.Collections;
import java.util.Comparator;
import java.util.LinkedHashMap;
import java.util.List;
import java.uti... | 2,344 | 25.055556 | 138 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/crossref/Test.java | package org.grobid.core.utilities.crossref;
import java.util.List;
import java.util.Map;
import java.util.HashMap;
import org.grobid.core.data.BiblioItem;
import org.grobid.core.main.LibraryLoader;
import org.grobid.core.utilities.GrobidProperties;
/**
* Test class with 100 requests (works/doi)
*
*/
public class ... | 4,810 | 24.188482 | 130 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/crossref/CrossrefClient.java | package org.grobid.core.utilities.crossref;
import java.io.Closeable;
import java.io.IOException;
import java.net.URISyntaxException;
import java.util.Map;
import java.util.HashMap;
import java.util.List;
import java.util.ArrayList;
import java.util.concurrent.*;
import org.apache.commons.lang3.concurrent.TimedSemaph... | 6,566 | 36.3125 | 158 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/crossref/CrossrefDeserializer.java | package org.grobid.core.utilities.crossref;
import java.io.IOException;
import java.util.ArrayList;
import java.util.Iterator;
import java.util.List;
import org.apache.http.client.ClientProtocolException;
import com.fasterxml.jackson.core.JsonParseException;
import com.fasterxml.jackson.core.JsonParser;
import com.f... | 3,004 | 28.460784 | 124 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/crossref/CrossrefRequestTask.java | package org.grobid.core.utilities.crossref;
import java.util.List;
/**
* Task to execute its request at the right time.
*
*/
public class CrossrefRequestTask<T extends Object> extends CrossrefRequestListener<T> implements Runnable {
protected CrossrefClient client;
protected CrossrefRequest<T> request;
publ... | 1,140 | 21.82 | 107 | java |
grobid | grobid-master/grobid-core/src/main/java/org/grobid/core/utilities/crossref/CrossrefRequest.java | package org.grobid.core.utilities.crossref;
import org.apache.http.Header;
import org.apache.http.HttpEntity;
import org.apache.http.HttpHost;
import org.apache.http.HttpResponse;
import org.apache.http.client.config.CookieSpecs;
import org.apache.http.client.config.RequestConfig;
import org.apache.http.client.ClientP... | 8,235 | 35.604444 | 143 | java |
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